Rroxscaffold_5G00352460

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0015764
Physical Location & Seq
Reverse (-)
29482962 .. 29497605
14644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00352460.1

Sequence Viewer

Length: 486 bp
ATGGGAAGGTGTGTACCATCGCCGAGGTTGAGGAAGCAAAGGCTGTTCGAGGTCGTTTCCAATATGGACTACATGCTTGGCATATTCTCTATTCCAAAGGAGATTAATTTGAGAAACTGGATTGCTACGTGGTGGAACCACTTTCTAATGCGAGTGTTGTGGTTGTCCGGTACTTTCTTCACCGAGCAAGGTGCCACCATGAACAGAACTATTGTGCCCGGTTTTGAGATACCAGCTGCTTCACTTCAATCATTTATATTCCTGGTCATAATGATGATCATACCCATTTATGACCGCATTTTAGTTCCAATAGCAAGTGCTATCACCAGAGAACCCTCTCGGCATTACAATGCCACAAAGGATCGGAACTTGAAGGCGAGAGAATGTGACCGTGTGGATCACCGAGCTCGGACACCACTATTTTTCAGGCCACTCATTTTGGCCACGCTCATACTACGCCGCTACCAACTCCCGCCAAAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

161

Amino Acids

18.96

Weight (kDa)

10.63

Isoelectric Point (pI)

55.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 57 - 110 2.8e-09 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 191
AciI CCGC 3 cut(s) 295, 460, 473
AclWI GGATC 2 cut(s) 369, 405
AcoI YGGCCR 1 cut(s) 441
AfaI GTAC 2 cut(s) 15, 172
AfiI CCNNNNNNNGG 1 cut(s) 478
AgsI TTSAA 2 cut(s) 248, 373
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 2 cut(s) 236, 407
AluI AGCT 2 cut(s) 236, 407
Alw21I GWGCWC 1 cut(s) 409
AlwI GGATC 2 cut(s) 369, 405
AoxI GGCC 2 cut(s) 428, 441
ApeKI GCWGC 1 cut(s) 236
AseI ATTAAT 1 cut(s) 105
AsuC2I CCSGG 1 cut(s) 219
AsuHPI GGTGA 3 cut(s) 172, 316, 392
BaeGI GKGCMC 1 cut(s) 219
BalI TGGCCA 1 cut(s) 443
BanI GGYRCC 1 cut(s) 191
BanII GRGCYC 1 cut(s) 409
Bbv12I GWGCWC 1 cut(s) 409
BbvI GCAGC 1 cut(s) 223
BccI CCATC 1 cut(s) 25
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BciT130I CCWGG 1 cut(s) 263
BclI TGATCA 1 cut(s) 276
BcnI CCSGG 1 cut(s) 219
BisI GCNGC 2 cut(s) 237, 460
BlsI GCNGC 2 cut(s) 238, 461
Bme1390I CCNGG 2 cut(s) 219, 263
BmiI GGNNCC 2 cut(s) 137, 193
BmrFI CCNGG 2 cut(s) 219, 263
BpuMI CCSGG 1 cut(s) 219
BsaAI YACGTR 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 23
BsaWI WCCGGW 1 cut(s) 167
Bsc4I CCNNNNNNNGG 1 cut(s) 478
Bse1I ACTGG 1 cut(s) 122
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 1 cut(s) 23
BseLI CCNNNNNNNGG 1 cut(s) 478
BseNI ACTGG 1 cut(s) 122
BseSI GKGCMC 1 cut(s) 219
BseXI GCAGC 1 cut(s) 223
BshFI GGCC 2 cut(s) 430, 443
BshNI GGYRCC 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 409
BsiSI CCGG 2 cut(s) 168, 219
BslI CCNNNNNNNGG 1 cut(s) 478
BsnI GGCC 2 cut(s) 430, 443
Bsp1286I GDGCHC 2 cut(s) 219, 409
Bsp143I GATC 3 cut(s) 276, 361, 397
BspACI CCGC 3 cut(s) 295, 460, 473
BspANI GGCC 2 cut(s) 430, 443
BspLI GGNNCC 2 cut(s) 137, 193
BspPI GGATC 2 cut(s) 369, 405
BspT107I GGYRCC 1 cut(s) 191
BsrI ACTGG 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 3 cut(s) 276, 361, 397
Bst2UI CCWGG 1 cut(s) 263
Bst4CI ACNGT 1 cut(s) 392
BstBAI YACGTR 1 cut(s) 129
BstKTI GATC 3 cut(s) 279, 364, 400
BstMBI GATC 3 cut(s) 276, 361, 397
BstNI CCWGG 1 cut(s) 263
BstNSI RCATGY 1 cut(s) 76
BstSCI CCNGG 2 cut(s) 217, 261
BstSLI GKGCMC 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 223
BsuRI GGCC 2 cut(s) 430, 443
BtgZI GCGATG 1 cut(s) 3
Csp6I GTAC 2 cut(s) 14, 171
CspCI CAANNNNNGTGG 2 cut(s) 420, 455
CviAII CATG 2 cut(s) 73, 199
CviJI RGCY 5 cut(s) 43, 236, 407, 430, 443
CviKI_1 RGCY 5 cut(s) 43, 236, 407, 430, 443
CviQI GTAC 2 cut(s) 14, 171
DpnI GATC 3 cut(s) 278, 363, 399
DpnII GATC 3 cut(s) 276, 361, 397
EaeI YGGCCR 1 cut(s) 441
Ecl136II GAGCTC 1 cut(s) 407
Eco24I GRGCYC 1 cut(s) 409
Eco53kI GAGCTC 1 cut(s) 407
EcoICRI GAGCTC 1 cut(s) 407
EcoRII CCWGG 1 cut(s) 261
EcoT38I GRGCYC 1 cut(s) 409
FaeI CATG 2 cut(s) 76, 202
FaiI YATR 9 cut(s) 65, 74, 83, 200, 257, 269, 281, 291, 452
FatI CATG 2 cut(s) 72, 198
FauI CCCGC 1 cut(s) 480
FbaI TGATCA 1 cut(s) 276
Fnu4HI GCNGC 2 cut(s) 237, 460
FriOI GRGCYC 1 cut(s) 409
Fsp4HI GCNGC 2 cut(s) 237, 460
GluI GCNGC 2 cut(s) 237, 460
HaeIII GGCC 2 cut(s) 430, 443
HapII CCGG 2 cut(s) 168, 219
Hin1II CATG 2 cut(s) 76, 202
HpaII CCGG 2 cut(s) 168, 219
HphI GGTGA 3 cut(s) 172, 316, 392
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 2 cut(s) 366, 411
Hpy8I GTNNAC 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 367
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4IV ACGT 1 cut(s) 128
HpySE526I ACGT 1 cut(s) 128
Hsp92II CATG 2 cut(s) 76, 202
Ksp22I TGATCA 1 cut(s) 276
Kzo9I GATC 3 cut(s) 276, 361, 397
LpnPI CCDG 8 cut(s) 103, 181, 232, 246, 248, 275, 340, 412
Lsp1109I GCAGC 1 cut(s) 223
MaeII ACGT 1 cut(s) 128
MaeIII GTNAC 1 cut(s) 386
MalI GATC 3 cut(s) 278, 363, 399
MboI GATC 3 cut(s) 276, 361, 397
MboII GAAGA 1 cut(s) 169
MhlI GDGCHC 2 cut(s) 219, 409
MlsI TGGCCA 1 cut(s) 443
MluCI AATT 1 cut(s) 106
MluNI TGGCCA 1 cut(s) 443
MnlI CCTC 4 cut(s) 18, 24, 43, 346
Mox20I TGGCCA 1 cut(s) 443
MscI TGGCCA 1 cut(s) 443
MseI TTAA 1 cut(s) 105
MslI CAYNNNNRTG 2 cut(s) 272, 348
Msp20I TGGCCA 1 cut(s) 443
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 2 cut(s) 168, 219
MspR9I CCNGG 2 cut(s) 219, 263
MvaI CCWGG 1 cut(s) 263
NciI CCSGG 1 cut(s) 219
NdeII GATC 3 cut(s) 276, 361, 397
NlaIII CATG 2 cut(s) 76, 202
NlaIV GGNNCC 2 cut(s) 137, 193
NmeAIII GCCGAG 2 cut(s) 48, 319
NmuCI GTSAC 1 cut(s) 386
NspI RCATGY 1 cut(s) 76
PkrI GCNGC 2 cut(s) 238, 461
Ppu21I YACGTR 1 cut(s) 129
PshBI ATTAAT 1 cut(s) 105
Psp124BI GAGCTC 1 cut(s) 409
Psp6I CCWGG 1 cut(s) 261
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 2 cut(s) 137, 193
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 2 cut(s) 15, 172
RsaNI GTAC 2 cut(s) 14, 171
RseI CAYNNNNRTG 2 cut(s) 272, 348
SacI GAGCTC 1 cut(s) 409
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 2 cut(s) 237, 460
Sau3AI GATC 3 cut(s) 276, 361, 397
ScrFI CCNGG 2 cut(s) 219, 263
SduI GDGCHC 2 cut(s) 219, 409
SetI ASST 7 cut(s) 11, 29, 54, 131, 193, 238, 409
SmiMI CAYNNNNRTG 2 cut(s) 272, 348
Sse9I AATT 1 cut(s) 106
SsiI CCGC 3 cut(s) 295, 460, 473
SstI GAGCTC 1 cut(s) 409
StyD4I CCNGG 2 cut(s) 217, 261
TaaI ACNGT 1 cut(s) 392
TaiI ACGT 1 cut(s) 131
TaqI TCGA 1 cut(s) 48
TasI AATT 1 cut(s) 106
TauI GCSGC 1 cut(s) 462
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 1 cut(s) 215
VspI ATTAAT 1 cut(s) 105
XceI RCATGY 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.