Rroxscaffold_160G00433810

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000160
OG0015764
Physical Location & Seq
Reverse (-)
305319 .. 305973
655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_160G00433810.1

Sequence Viewer

Length: 246 bp
ATGGACAGAACTATTGTGCCCGGTTTTGAGATACCAGCTGCTTCACTTCAATCATTTATATTCCTGGCCATAATGATGATCATACCCATTTTTGACCGCATTTTAGTTCCAATAGCAAGAGCTATCACCAGAGAACCCTCCTGGCATTACAATGCTACAAAGGATCGGAACTTGATGGCAGAGAATGTGACCGTGTGGATCACCGAGCTCGGTCACCACTATTTTCGTGCCACTCATTTTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

81

Amino Acids

9.37

Weight (kDa)

6.9

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 1 - 45 3.5e-07 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 97
AclWI GGATC 2 cut(s) 171, 206
AcoI YGGCCR 1 cut(s) 66
AgsI TTSAA 1 cut(s) 50
AjnI CCWGG 2 cut(s) 63, 140
AluBI AGCT 3 cut(s) 38, 122, 208
AluI AGCT 3 cut(s) 38, 122, 208
Alw21I GWGCWC 1 cut(s) 210
AlwI GGATC 2 cut(s) 171, 206
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 38
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 3 cut(s) 118, 193, 206
BaeGI GKGCMC 1 cut(s) 21
BalI TGGCCA 1 cut(s) 68
BanII GRGCYC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 169
BciT130I CCWGG 2 cut(s) 65, 142
BclI TGATCA 1 cut(s) 78
BcnI CCSGG 1 cut(s) 21
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 3 cut(s) 21, 65, 142
BmrFI CCNGG 3 cut(s) 21, 65, 142
BpuMI CCSGG 1 cut(s) 21
BseBI CCWGG 2 cut(s) 65, 142
BseSI GKGCMC 1 cut(s) 21
BseXI GCAGC 1 cut(s) 25
BshFI GGCC 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 210
BsiSI CCGG 1 cut(s) 21
BsnI GGCC 1 cut(s) 68
Bsp1286I GDGCHC 2 cut(s) 21, 210
Bsp143I GATC 3 cut(s) 78, 163, 198
BspACI CCGC 1 cut(s) 97
BspANI GGCC 1 cut(s) 68
BspPI GGATC 2 cut(s) 171, 206
BssMI GATC 3 cut(s) 78, 163, 198
Bst2UI CCWGG 2 cut(s) 65, 142
Bst4CI ACNGT 1 cut(s) 193
BstEII GGTNACC 1 cut(s) 212
BstKTI GATC 3 cut(s) 81, 166, 201
BstMBI GATC 3 cut(s) 78, 163, 198
BstNI CCWGG 2 cut(s) 65, 142
BstPI GGTNACC 1 cut(s) 212
BstSCI CCNGG 3 cut(s) 19, 63, 140
BstSLI GKGCMC 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 25
BsuRI GGCC 1 cut(s) 68
CspCI CAANNNNNGTGG 1 cut(s) 220
CviJI RGCY 4 cut(s) 38, 68, 122, 208
CviKI_1 RGCY 4 cut(s) 38, 68, 122, 208
DpnI GATC 3 cut(s) 80, 165, 200
DpnII GATC 3 cut(s) 78, 163, 198
EaeI YGGCCR 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 210
Eco53kI GAGCTC 1 cut(s) 208
Eco91I GGTNACC 1 cut(s) 212
EcoICRI GAGCTC 1 cut(s) 208
EcoO65I GGTNACC 1 cut(s) 212
EcoRII CCWGG 2 cut(s) 63, 140
EcoT38I GRGCYC 1 cut(s) 210
FaiI YATR 3 cut(s) 59, 71, 83
FbaI TGATCA 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 39
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 1 cut(s) 39
GluI GCNGC 1 cut(s) 39
HaeIII GGCC 1 cut(s) 68
HapII CCGG 1 cut(s) 21
HpaII CCGG 1 cut(s) 21
HphI GGTGA 3 cut(s) 118, 193, 206
Hpy188I TCNGA 1 cut(s) 168
HpyCH4III ACNGT 1 cut(s) 193
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 3 cut(s) 78, 163, 198
LpnPI CCDG 7 cut(s) 34, 48, 50, 77, 127, 142, 154
Lsp1109I GCAGC 1 cut(s) 25
MaeIII GTNAC 2 cut(s) 187, 212
MalI GATC 3 cut(s) 80, 165, 200
MboI GATC 3 cut(s) 78, 163, 198
MhlI GDGCHC 2 cut(s) 21, 210
MlsI TGGCCA 1 cut(s) 68
MluNI TGGCCA 1 cut(s) 68
MnlI CCTC 1 cut(s) 148
Mox20I TGGCCA 1 cut(s) 68
MscI TGGCCA 1 cut(s) 68
MslI CAYNNNNRTG 2 cut(s) 74, 150
Msp20I TGGCCA 1 cut(s) 68
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 3 cut(s) 21, 65, 142
MvaI CCWGG 2 cut(s) 65, 142
NciI CCSGG 1 cut(s) 21
NdeII GATC 3 cut(s) 78, 163, 198
NmuCI GTSAC 2 cut(s) 187, 212
PkrI GCNGC 1 cut(s) 40
Psp124BI GAGCTC 1 cut(s) 210
Psp6I CCWGG 2 cut(s) 63, 140
PspEI GGTNACC 1 cut(s) 212
PspGI CCWGG 2 cut(s) 63, 140
PvuII CAGCTG 1 cut(s) 38
RseI CAYNNNNRTG 2 cut(s) 74, 150
SacI GAGCTC 1 cut(s) 210
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 3 cut(s) 78, 163, 198
ScrFI CCNGG 3 cut(s) 21, 65, 142
SduI GDGCHC 2 cut(s) 21, 210
SetI ASST 3 cut(s) 40, 124, 210
SmiMI CAYNNNNRTG 2 cut(s) 74, 150
SsiI CCGC 1 cut(s) 97
SstI GAGCTC 1 cut(s) 210
StyD4I CCNGG 3 cut(s) 19, 63, 140
TaaI ACNGT 1 cut(s) 193
TaqII GACCGA 1 cut(s) 200
TseFI GTSAC 2 cut(s) 187, 212
TseI GCWGC 1 cut(s) 38
Tsp45I GTSAC 2 cut(s) 187, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.