Rmu_sc0014985.1_g000001

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014985.1
OG0015764
Physical Location & Seq
Forward (+)
1 .. 772
772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014985.1_g000001.1.cds

Sequence Viewer

Length: 562 bp
gttcctcaacaaagccttgcttgcaccagataatttgaagaaaaacagcaaggtgtgtaccatcgctgaggttgaggaagcaaaggctgttctgcggctgtttccaatatgggctacatgcttggcatatgctattgtatttgcacagtccactactttcttcaccaagcaaggtgccaccatggacagaactattgtgcccggttttgacataccagctgcttcacttcagtcatttatcagcgttgccataatgatgatcatacccatttatgaccgcatttttgttccaatggcaagagctttcaccagaaaaccctctggcattacaatgctacaaagaatcggtactgggatatttttctccgtcatatctatggtcatcgcagctttagttgagataaaaaggctccaaactgccaaagactatgacctggttgatctgccaagtgccacaattccaatgagtatttggtggttggttcctcagtactttctgtatggactagccgatgaactgggatatttttctccatcatatctatggtcatcgcagctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

186

Amino Acids

20.81

Weight (kDa)

8.89

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 174
AciI CCGC 2 cut(s) 95, 278
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 3 cut(s) 59, 350, 492
AgsI TTSAA 1 cut(s) 38
AjnI CCWGG 1 cut(s) 433
AluBI AGCT 4 cut(s) 219, 303, 390, 557
AluI AGCT 4 cut(s) 219, 303, 390, 557
ApeKI GCWGC 3 cut(s) 219, 387, 554
ArsI GACNNNNNNTTYG 2 cut(s) 267, 299
AsuC2I CCSGG 1 cut(s) 202
AsuHPI GGTGA 2 cut(s) 155, 299
BaeGI GKGCMC 1 cut(s) 202
BanI GGYRCC 1 cut(s) 174
BbvCI CCTCAGC 1 cut(s) 67
BbvI GCAGC 2 cut(s) 206, 399
BccI CCATC 2 cut(s) 69, 542
BciT130I CCWGG 1 cut(s) 435
BclI TGATCA 1 cut(s) 259
BcnI CCSGG 1 cut(s) 202
BfaI CTAG 1 cut(s) 507
BisI GCNGC 4 cut(s) 96, 220, 388, 555
BlsI GCNGC 4 cut(s) 97, 221, 389, 556
BmcAI AGTACT 1 cut(s) 492
Bme1390I CCNGG 2 cut(s) 202, 435
BmiI GGNNCC 3 cut(s) 176, 411, 484
BmrFI CCNGG 2 cut(s) 202, 435
BmrI ACTGGG 2 cut(s) 361, 528
BmuI ACTGGG 2 cut(s) 361, 528
Bpu10I CCTNAGC 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 202
BsaJI CCNNGG 1 cut(s) 181
Bse1I ACTGG 2 cut(s) 356, 523
BseBI CCWGG 1 cut(s) 435
BseDI CCNNGG 1 cut(s) 181
BseMII CTCAG 2 cut(s) 58, 501
BseNI ACTGG 2 cut(s) 356, 523
BseSI GKGCMC 1 cut(s) 202
BseXI GCAGC 2 cut(s) 206, 399
BshNI GGYRCC 1 cut(s) 174
BsiSI CCGG 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 2 cut(s) 259, 440
Bsp19I CCATGG 1 cut(s) 181
BspACI CCGC 2 cut(s) 95, 278
BspCNI CTCAG 2 cut(s) 59, 500
BspLI GGNNCC 3 cut(s) 176, 411, 484
BspT107I GGYRCC 1 cut(s) 174
BsrI ACTGG 2 cut(s) 356, 523
BssECI CCNNGG 1 cut(s) 181
BssMI GATC 2 cut(s) 259, 440
BssT1I CCWWGG 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 435
Bst4CI ACNGT 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 2 cut(s) 67, 487
BstDSI CCRYGG 1 cut(s) 181
BstKTI GATC 2 cut(s) 262, 443
BstMBI GATC 2 cut(s) 259, 440
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstNI CCWGG 1 cut(s) 435
BstNSI RCATGY 1 cut(s) 121
BstSCI CCNGG 2 cut(s) 200, 433
BstSLI GKGCMC 1 cut(s) 202
BstV1I GCAGC 2 cut(s) 206, 399
BtgI CCRYGG 1 cut(s) 181
BtgZI GCGATG 3 cut(s) 47, 368, 535
Cac8I GCNNGC 1 cut(s) 22
CsiI ACCWGGT 1 cut(s) 433
Csp6I GTAC 3 cut(s) 58, 349, 491
CviAII CATG 2 cut(s) 118, 182
CviQI GTAC 3 cut(s) 58, 349, 491
DdeI CTNAG 2 cut(s) 67, 487
DpnI GATC 2 cut(s) 261, 442
DpnII GATC 2 cut(s) 259, 440
Eco130I CCWWGG 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 433
EcoT14I CCWWGG 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 181
FaeI CATG 2 cut(s) 121, 185
FalI AAGNNNNNCTT 1 cut(s) 36
FatI CATG 2 cut(s) 117, 181
FauNDI CATATG 1 cut(s) 128
FbaI TGATCA 1 cut(s) 259
Fnu4HI GCNGC 4 cut(s) 96, 220, 388, 555
Fsp4HI GCNGC 4 cut(s) 96, 220, 388, 555
FspBI CTAG 1 cut(s) 507
GluI GCNGC 4 cut(s) 96, 220, 388, 555
HapII CCGG 1 cut(s) 202
Hin1II CATG 2 cut(s) 121, 185
HinfI GANTC 1 cut(s) 343
HpaII CCGG 1 cut(s) 202
HphI GGTGA 2 cut(s) 155, 299
Hpy166II GTNNAC 2 cut(s) 58, 151
Hpy8I GTNNAC 2 cut(s) 58, 151
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 2 cut(s) 24, 144
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpyF3I CTNAG 2 cut(s) 67, 487
Hsp92II CATG 2 cut(s) 121, 185
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 2 cut(s) 259, 440
LmnI GCTCC 1 cut(s) 415
LpnPI CCDG 9 cut(s) 40, 215, 229, 307, 323, 337, 420, 447, 504
Lsp1109I GCAGC 2 cut(s) 206, 399
MabI ACCWGGT 1 cut(s) 433
MaeI CTAG 1 cut(s) 507
MalI GATC 2 cut(s) 261, 442
MboI GATC 2 cut(s) 259, 440
MboII GAAGA 2 cut(s) 50, 152
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 2 cut(s) 32, 457
MnlI CCTC 5 cut(s) 15, 62, 68, 329, 496
MslI CAYNNNNRTG 4 cut(s) 255, 330, 375, 542
MspA1I CMGCKG 1 cut(s) 219
MspI CCGG 1 cut(s) 202
MspR9I CCNGG 2 cut(s) 202, 435
MvaI CCWGG 1 cut(s) 435
MwoI GCNNNNNNNGC 1 cut(s) 21
NciI CCSGG 1 cut(s) 202
NcoI CCATGG 1 cut(s) 181
NdeI CATATG 1 cut(s) 128
NdeII GATC 2 cut(s) 259, 440
NlaIII CATG 2 cut(s) 121, 185
NlaIV GGNNCC 3 cut(s) 176, 411, 484
NspI RCATGY 1 cut(s) 121
PfeI GAWTC 1 cut(s) 343
PkrI GCNGC 4 cut(s) 97, 221, 389, 556
Psp6I CCWGG 1 cut(s) 433
PspGI CCWGG 1 cut(s) 433
PspN4I GGNNCC 3 cut(s) 176, 411, 484
PvuII CAGCTG 1 cut(s) 219
RsaI GTAC 3 cut(s) 59, 350, 492
RsaNI GTAC 3 cut(s) 58, 349, 491
RseI CAYNNNNRTG 4 cut(s) 255, 330, 375, 542
SatI GCNGC 4 cut(s) 96, 220, 388, 555
Sau3AI GATC 2 cut(s) 259, 440
ScaI AGTACT 1 cut(s) 492
ScrFI CCNGG 2 cut(s) 202, 435
SduI GDGCHC 1 cut(s) 202
SetI ASST 8 cut(s) 55, 73, 176, 221, 305, 392, 436, 559
SexAI ACCWGGT 1 cut(s) 433
SmiMI CAYNNNNRTG 4 cut(s) 255, 330, 375, 542
Sse9I AATT 2 cut(s) 32, 457
SsiI CCGC 2 cut(s) 95, 278
SspMI CTAG 1 cut(s) 507
StyD4I CCNGG 2 cut(s) 200, 433
StyI CCWWGG 1 cut(s) 181
TaaI ACNGT 1 cut(s) 148
TasI AATT 2 cut(s) 32, 457
TatI WGTACW 1 cut(s) 490
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 1 cut(s) 343
TseI GCWGC 3 cut(s) 219, 387, 554
TspDTI ATGAA 1 cut(s) 529
TspGWI ACGGA 1 cut(s) 356
XceI RCATGY 1 cut(s) 121
XcmI CCANNNNNNNNNTGG 2 cut(s) 469, 541
XspI CTAG 1 cut(s) 507
ZrmI AGTACT 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.