Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0015764

Physical Location & Seq

Genomic Coordinates Reverse (-)

24653277 .. 24676383

Gene Structure 23107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00350540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAAAAATGCATCATGCAACATACCACATAAAACAAGTACTTTACAAAAGGAAGCCACACACAAAAGTCTAACTATAGACATCGAGGCAAAGCTTGTCACAATACACAAAGGAATTAGGTTCTCCACTATCACACTTCGCCTTACGCCGACTCGTGGGAGACAGTGTCGAATTGACCGAGGAGGAGGCCATGTCGGCGGCGGCGGTGTCGGCGTCTTCATCGGAGGAGGAAGAGGTGGGAGGACACCGATGAATTTCGACCACCATCTCATCGTCGTCATCGTCCTCTGCGAAGAAGAGGCAAAATCTCCGGTTTTATGCGAAGCTCGAACCAAGTTCGTCTATTCTAGAGGGCATTTAGACCCCCGTTTCGATCGCCTACACCGACTAAGAATACCCGGACGACATGTTCCTCCCCGGACACATCCGCAACGCCGCCACTTCTACACCAGATCTCACCCCTCCGGTGTTAATCCATCAAGTTTTGAACAAGACTTGGAGCTCGTGAAGCTTGGCGGTGCAACAAGGAAGGCTGCATCATGGTGCTTGGCGATTGTTGTGAACAAAGTGTTTGGTGATGGGTTGGGAAATTTGGAGAAAAGAGATGTGTATGAGAGGCTTTGTAGGCCTAAACCGGTTGATGGGGAGCCAAGAGAATTGCTTGTCGGGTATGAAAATGAGATTTTGGTCCCAAGACAAGGATCGCTTCCCTTAGAAGGATCGGAACTTGATGGCAGAGAATGTGACCGTGTGGATCACCGAGCTCGGTCACCACTATTTTTCAGGCCACTCATTTTGGCCTTAGCAATGCTCGGCTTTGGTTCTTACCAAAGCCTAATCAAAGCTATGAGCCTAGCGGCACAAGGCCTTGACTTCCTTAACGTATGCTCCATAATAGCTCTAGGTGCTCATGTAAAGATCAACTCCATCAAGAAAGATATAATGTCCAAAGAGCAATGCGTCATAAATAGCCCATCAAAGAATAAGGACAAAGATCCTCCATTAAAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box PP2

Protein Analysis

337

Amino Acids

37.35

Weight (kDa)

9.72

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015764)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0227751
rosa_laevigata	RLG00000001624 RLG00000030351
rosa_multiflora	Rmu_sc0014985.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433810 Rroxscaffold_1G00023370 Rroxscaffold_1G00023380 Rroxscaffold_1G00035890 Rroxscaffold_2G00123370 Rroxscaffold_3G00233000 Rroxscaffold_5G00350540 Rroxscaffold_5G00352460 Rroxscaffold_5G00371070 Rroxscaffold_6G00397330 Rroxscaffold_7G00191060 Rroxscaffold_7G00194560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	198, 201, 204, 428, 436, 516, 857
AclWI	GGATC	4 cut(s)	709, 727, 762, 989
AcsI	RAATTY	2 cut(s)	253, 589
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	1 cut(s)	40
AfiI	CCNNNNNNNGG	4 cut(s)	155, 641, 698, 716
AflIII	ACRYGT	1 cut(s)	406
AgeI	ACCGGT	1 cut(s)	634
AgsI	TTSAA	1 cut(s)	488
AloI	GAACNNNNNNTCC	2 cut(s)	393, 425
AluBI	AGCT	7 cut(s)	94, 326, 502, 511, 764, 845, 899
AluI	AGCT	7 cut(s)	94, 326, 502, 511, 764, 845, 899
Alw21I	GWGCWC	3 cut(s)	504, 766, 910
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	4 cut(s)	709, 727, 762, 989
AoxI	GGCC	5 cut(s)	187, 626, 785, 798, 865
ApeKI	GCWGC	1 cut(s)	533
ApoI	RAATTY	2 cut(s)	253, 589
ArsI	GACNNNNNNTTYG	2 cut(s)	353, 385
AsiGI	ACCGGT	1 cut(s)	634
AspS9I	GGNCC	1 cut(s)	688
AsuC2I	CCSGG	2 cut(s)	399, 418
AsuHPI	GGTGA	4 cut(s)	449, 587, 749, 762
AvaII	GGWCC	1 cut(s)	688
BanII	GRGCYC	2 cut(s)	504, 766
BauI	CACGAG	2 cut(s)	153, 503
BbsI	GAAGAC	1 cut(s)	208
Bbv12I	GWGCWC	3 cut(s)	504, 766, 910
BbvI	GCAGC	1 cut(s)	520
BccI	CCATC	7 cut(s)	273, 484, 572, 635, 725, 935, 982
BcnI	CCSGG	2 cut(s)	399, 418
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	3 cut(s)	348, 854, 902
BfmI	CTRYAG	1 cut(s)	75
BglI	GCCNNNNNGGC	1 cut(s)	195
BglII	AGATCT	1 cut(s)	452
BisI	GCNGC	5 cut(s)	199, 202, 436, 534, 858
BlsI	GCNGC	5 cut(s)	200, 203, 437, 535, 859
BmcAI	AGTACT	1 cut(s)	40
Bme1390I	CCNGG	2 cut(s)	399, 418
Bme18I	GGWCC	1 cut(s)	688
BmgT120I	GGNCC	1 cut(s)	688
BmiI	GGNNCC	2 cut(s)	648, 690
BmrFI	CCNGG	2 cut(s)	399, 418
BmsI	GCATC	2 cut(s)	20, 545
BpiI	GAAGAC	1 cut(s)	208
Bpu10I	CCTNAGC	1 cut(s)	802
BpuMI	CCSGG	2 cut(s)	399, 418
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	2 cut(s)	178, 416
BsaWI	WCCGGW	3 cut(s)	310, 464, 634
BsaXI	ACNNNNNCTCC	6 cut(s)	151, 177, 181, 207, 872, 902
Bsc4I	CCNNNNNNNGG	4 cut(s)	155, 641, 698, 716
Bse118I	RCCGGY	1 cut(s)	634
Bse3DI	GCAATG	2 cut(s)	813, 962
BseDI	CCNNGG	2 cut(s)	178, 416
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	4 cut(s)	155, 641, 698, 716
BseMI	GCAATG	2 cut(s)	813, 962
BseRI	GAGGAG	3 cut(s)	195, 198, 240
BseXI	GCAGC	1 cut(s)	520
Bsh1285I	CGRYCG	1 cut(s)	376
BshFI	GGCC	5 cut(s)	189, 628, 787, 800, 867
BshTI	ACCGGT	1 cut(s)	634
BsiEI	CGRYCG	1 cut(s)	376
BsiHKAI	GWGCWC	3 cut(s)	504, 766, 910
BsiSI	CCGG	5 cut(s)	311, 399, 418, 465, 635
BslFI	GGGAC	1 cut(s)	674
BslI	CCNNNNNNNGG	4 cut(s)	155, 641, 698, 716
BsmAI	GTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	674
BsnI	GGCC	5 cut(s)	189, 628, 787, 800, 867
Bsp1286I	GDGCHC	3 cut(s)	504, 766, 910
Bsp143I	GATC	7 cut(s)	373, 452, 701, 719, 754, 918, 994
BspACI	CCGC	7 cut(s)	198, 201, 204, 428, 436, 516, 857
BspANI	GGCC	5 cut(s)	189, 628, 787, 800, 867
BspLI	GGNNCC	2 cut(s)	648, 690
BspPI	GGATC	4 cut(s)	709, 727, 762, 989
BsrDI	GCAATG	2 cut(s)	813, 962
BsrFI	RCCGGY	1 cut(s)	634
BssAI	RCCGGY	1 cut(s)	634
BssECI	CCNNGG	2 cut(s)	178, 416
BssMI	GATC	7 cut(s)	373, 452, 701, 719, 754, 918, 994
BssNI	GRCGYC	1 cut(s)	213
BssSI	CACGAG	2 cut(s)	153, 503
Bst2BI	CACGAG	2 cut(s)	153, 503
Bst4CI	ACNGT	2 cut(s)	165, 749
Bst6I	CTCTTC	2 cut(s)	226, 291
BstACI	GRCGYC	1 cut(s)	213
BstDEI	CTNAG	3 cut(s)	389, 712, 802
BstEII	GGTNACC	1 cut(s)	768
BstF5I	GGATG	1 cut(s)	424
BstKTI	GATC	7 cut(s)	376, 455, 704, 722, 757, 921, 997
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	7 cut(s)	373, 452, 701, 719, 754, 918, 994
BstMCI	CGRYCG	1 cut(s)	376
BstMWI	GCNNNNNNNGC	5 cut(s)	195, 210, 508, 625, 905
BstNSI	RCATGY	1 cut(s)	410
BstPI	GGTNACC	1 cut(s)	768
BstSCI	CCNGG	2 cut(s)	397, 416
BstSFI	CTRYAG	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	520
BstV2I	GAAGAC	1 cut(s)	208
BstX2I	RGATCY	2 cut(s)	452, 994
BstYI	RGATCY	2 cut(s)	452, 994
BsuRI	GGCC	5 cut(s)	189, 628, 787, 800, 867
BtsCI	GGATG	1 cut(s)	424
BtsIMutI	CAGTG	1 cut(s)	170
Cfr10I	RCCGGY	1 cut(s)	634
Cfr13I	GGNCC	1 cut(s)	688
CseI	GACGC	2 cut(s)	202, 949
Csp6I	GTAC	1 cut(s)	39
CspAI	ACCGGT	1 cut(s)	634
CspCI	CAANNNNNGTGG	2 cut(s)	777, 812
CviAII	CATG	5 cut(s)	15, 191, 407, 540, 911
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	3 cut(s)	389, 712, 802
DpnI	GATC	7 cut(s)	375, 454, 703, 721, 756, 920, 996
DpnII	GATC	7 cut(s)	373, 452, 701, 719, 754, 918, 994
Eam1104I	CTCTTC	2 cut(s)	226, 291
EarI	CTCTTC	2 cut(s)	226, 291
Ecl136II	GAGCTC	2 cut(s)	502, 764
Eco147I	AGGCCT	2 cut(s)	628, 867
Eco24I	GRGCYC	2 cut(s)	504, 766
Eco47I	GGWCC	1 cut(s)	688
Eco53kI	GAGCTC	2 cut(s)	502, 764
Eco91I	GGTNACC	1 cut(s)	768
EcoICRI	GAGCTC	2 cut(s)	502, 764
EcoO65I	GGTNACC	1 cut(s)	768
EcoT22I	ATGCAT	1 cut(s)	13
EcoT38I	GRGCYC	2 cut(s)	504, 766
FaeI	CATG	5 cut(s)	18, 194, 410, 543, 914
FalI	AAGNNNNNCTT	2 cut(s)	690, 722
FaqI	GGGAC	1 cut(s)	674
FatI	CATG	5 cut(s)	14, 190, 406, 539, 910
Fnu4HI	GCNGC	5 cut(s)	199, 202, 436, 534, 858
FokI	GGATG	1 cut(s)	411
FriOI	GRGCYC	2 cut(s)	504, 766
Fsp4HI	GCNGC	5 cut(s)	199, 202, 436, 534, 858
FspBI	CTAG	3 cut(s)	348, 854, 902
GluI	GCNGC	5 cut(s)	199, 202, 436, 534, 858
HaeIII	GGCC	5 cut(s)	189, 628, 787, 800, 867
HapII	CCGG	5 cut(s)	311, 399, 418, 465, 635
HgaI	GACGC	2 cut(s)	202, 949
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	5 cut(s)	18, 194, 410, 543, 914
HindIII	AAGCTT	2 cut(s)	92, 509
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	5 cut(s)	311, 399, 418, 465, 635
HphI	GGTGA	4 cut(s)	449, 587, 749, 762
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188I	TCNGA	2 cut(s)	224, 724
Hpy188III	TCNNGA	3 cut(s)	348, 505, 931
Hpy8I	GTNNAC	1 cut(s)	562
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	2 cut(s)	523, 710
HpyCH4III	ACNGT	2 cut(s)	165, 749
HpyCH4IV	ACGT	1 cut(s)	882
HpyCH4V	TGCA	4 cut(s)	11, 18, 521, 536
HpyF10VI	GCNNNNNNNGC	5 cut(s)	195, 210, 508, 625, 905
HpyF3I	CTNAG	3 cut(s)	389, 712, 802
HpySE526I	ACGT	1 cut(s)	882
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	5 cut(s)	18, 194, 410, 543, 914
Kzo9I	GATC	7 cut(s)	373, 452, 701, 719, 754, 918, 994
LmnI	GCTCC	3 cut(s)	499, 646, 893
LpnPI	CCDG	7 cut(s)	324, 412, 431, 463, 478, 648, 769
Lsp1109I	GCAGC	1 cut(s)	520
LweI	GCATC	2 cut(s)	20, 545
MaeI	CTAG	3 cut(s)	348, 854, 902
MaeII	ACGT	1 cut(s)	882
MaeIII	GTNAC	3 cut(s)	97, 743, 768
MalI	GATC	7 cut(s)	375, 454, 703, 721, 756, 920, 996
MboI	GATC	7 cut(s)	373, 452, 701, 719, 754, 918, 994
MboII	GAAGA	4 cut(s)	208, 243, 305, 308
MflI	RGATCY	2 cut(s)	452, 994
MhlI	GDGCHC	3 cut(s)	504, 766, 910
MluCI	AATT	5 cut(s)	114, 171, 253, 589, 656
MlyI	GAGTC	1 cut(s)	145
Mph1103I	ATGCAT	1 cut(s)	13
MseI	TTAA	3 cut(s)	471, 879, 1004
MslI	CAYNNNNRTG	1 cut(s)	541
MspI	CCGG	5 cut(s)	311, 399, 418, 465, 635
MspR9I	CCNGG	2 cut(s)	399, 418
MwoI	GCNNNNNNNGC	5 cut(s)	195, 210, 508, 625, 905
NciI	CCSGG	2 cut(s)	399, 418
NdeII	GATC	7 cut(s)	373, 452, 701, 719, 754, 918, 994
NlaIII	CATG	5 cut(s)	18, 194, 410, 543, 914
NlaIV	GGNNCC	2 cut(s)	648, 690
NmeAIII	GCCGAG	1 cut(s)	792
NmuCI	GTSAC	3 cut(s)	97, 743, 768
NsiI	ATGCAT	1 cut(s)	13
NspI	RCATGY	1 cut(s)	410
PceI	AGGCCT	2 cut(s)	628, 867
PciI	ACATGT	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	4 cut(s)	175, 279, 288, 382
PflFI	GACNNNGTC	1 cut(s)	165
PinAI	ACCGGT	1 cut(s)	634
PkrI	GCNGC	5 cut(s)	200, 203, 437, 535, 859
Ple19I	CGATCG	1 cut(s)	376
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PscI	ACATGT	1 cut(s)	406
Psp124BI	GAGCTC	2 cut(s)	504, 766
PspEI	GGTNACC	1 cut(s)	768
PspN4I	GGNNCC	2 cut(s)	648, 690
PspPI	GGNCC	1 cut(s)	688
PsuI	RGATCY	2 cut(s)	452, 994
PsyI	GACNNNGTC	1 cut(s)	165
PvuI	CGATCG	1 cut(s)	376
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
RseI	CAYNNNNRTG	1 cut(s)	541
SacI	GAGCTC	2 cut(s)	504, 766
SaqAI	TTAA	3 cut(s)	471, 879, 1004
SatI	GCNGC	5 cut(s)	199, 202, 436, 534, 858
Sau3AI	GATC	7 cut(s)	373, 452, 701, 719, 754, 918, 994
Sau96I	GGNCC	1 cut(s)	688
ScaI	AGTACT	1 cut(s)	40
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	2 cut(s)	399, 418
SduI	GDGCHC	3 cut(s)	504, 766, 910
SfaNI	GCATC	2 cut(s)	20, 545
SfcI	CTRYAG	1 cut(s)	75
SinI	GGWCC	1 cut(s)	688
SmiMI	CAYNNNNRTG	1 cut(s)	541
Sse9I	AATT	5 cut(s)	114, 171, 253, 589, 656
SseBI	AGGCCT	2 cut(s)	628, 867
SsiI	CCGC	7 cut(s)	198, 201, 204, 428, 436, 516, 857
SspMI	CTAG	3 cut(s)	348, 854, 902
SstI	GAGCTC	2 cut(s)	504, 766
StuI	AGGCCT	2 cut(s)	628, 867
StyD4I	CCNGG	2 cut(s)	397, 416
TaaI	ACNGT	2 cut(s)	165, 749
TaiI	ACGT	1 cut(s)	885
TaqI	TCGA	5 cut(s)	84, 169, 258, 328, 372
TaqII	GACCGA	2 cut(s)	192, 756
TasI	AATT	5 cut(s)	114, 171, 253, 589, 656
TatI	WGTACW	1 cut(s)	38
TauI	GCSGC	4 cut(s)	201, 204, 438, 860
Tru1I	TTAA	3 cut(s)	471, 879, 1004
Tru9I	TTAA	3 cut(s)	471, 879, 1004
TscAI	CASTG	1 cut(s)	170
TseFI	GTSAC	3 cut(s)	97, 743, 768
TseI	GCWGC	1 cut(s)	533
Tsp45I	GTSAC	3 cut(s)	97, 743, 768
TspDTI	ATGAA	4 cut(s)	17, 208, 266, 687
TspRI	CASTG	1 cut(s)	170
Tth111I	GACNNNGTC	1 cut(s)	165
VpaK11BI	GGWCC	1 cut(s)	688
XapI	RAATTY	2 cut(s)	253, 589
XbaI	TCTAGA	1 cut(s)	347
XceI	RCATGY	1 cut(s)	410
XspI	CTAG	3 cut(s)	348, 854, 902
ZrmI	AGTACT	1 cut(s)	40
Zsp2I	ATGCAT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.