Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0015764

Physical Location & Seq

Genomic Coordinates Forward (+)

28851163 .. 28857040

Gene Structure 5878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00023370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTTTAGAAGTTTCATTGGCATGTCGAGTTATGAAAATGAGATTTTGGTCCCAAGACAAGGATTGCTTCCCAAAATCAAGTGTAATGTGGACTCGGTGTCATGGCCACAAGGAAGTGCGTCTGCTAGTTTGATTTTTAGGTTGCAGATTGTAATTCTTCCGAGCCAACACACGCAGAAGCGTTTAACATGTCTAGGCAGGAATTTGTTGCTTCCCTTAGAAGGATCGGAACTTGATTGCAGAGAATGTGACCGTGTGGATCACCGAGCTCGGTCACCACTATTTTTCAGGCCACTCATTTTGGCTTCAAGTCCGCAACAATGGCAGCGTGTTGCTGCTGTAATATCACGTCCTCCCGCTACAGCTGCAATTCCGCAACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OTU

Protein Analysis

127

Amino Acids

14.29

Weight (kDa)

10.07

Isoelectric Point (pI)

68.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015764)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0227751
rosa_laevigata	RLG00000001624 RLG00000030351
rosa_multiflora	Rmu_sc0014985.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433810 Rroxscaffold_1G00023370 Rroxscaffold_1G00023380 Rroxscaffold_1G00035890 Rroxscaffold_2G00123370 Rroxscaffold_3G00233000 Rroxscaffold_5G00350540 Rroxscaffold_5G00352460 Rroxscaffold_5G00371070 Rroxscaffold_6G00397330 Rroxscaffold_7G00191060 Rroxscaffold_7G00194560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	314, 357, 374
AclWI	GGATC	2 cut(s)	232, 267
AcoI	YGGCCR	1 cut(s)	104
AcsI	RAATTY	1 cut(s)	202
AfiI	CCNNNNNNNGG	2 cut(s)	59, 221
AflIII	ACRYGT	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	309
AhdI	GACNNNNNGTC	1 cut(s)	97
AjiI	CACGTC	1 cut(s)	350
AluBI	AGCT	2 cut(s)	269, 365
AluI	AGCT	2 cut(s)	269, 365
Alw21I	GWGCWC	1 cut(s)	271
AlwI	GGATC	2 cut(s)	232, 267
AoxI	GGCC	2 cut(s)	104, 290
ApeKI	GCWGC	3 cut(s)	325, 335, 365
ApoI	RAATTY	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	254, 267
AvaII	GGWCC	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	271
BbvI	GCAGC	3 cut(s)	322, 337, 352
BfaI	CTAG	2 cut(s)	126, 194
BfmI	CTRYAG	1 cut(s)	360
BisI	GCNGC	3 cut(s)	326, 336, 366
BlsI	GCNGC	3 cut(s)	327, 337, 367
Bme18I	GGWCC	1 cut(s)	49
BmeRI	GACNNNNNGTC	1 cut(s)	97
BmgBI	CACGTC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 221
BseLI	CCNNNNNNNGG	2 cut(s)	59, 221
BseXI	GCAGC	3 cut(s)	322, 337, 352
BshFI	GGCC	2 cut(s)	106, 292
BsiHKAI	GWGCWC	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	2 cut(s)	59, 221
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	2 cut(s)	106, 292
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	2 cut(s)	224, 259
BspACI	CCGC	3 cut(s)	314, 357, 374
BspANI	GGCC	2 cut(s)	106, 292
BspLI	GGNNCC	1 cut(s)	51
BspPI	GGATC	2 cut(s)	232, 267
BssMI	GATC	2 cut(s)	224, 259
Bst4CI	ACNGT	1 cut(s)	254
BstDEI	CTNAG	1 cut(s)	217
BstEII	GGTNACC	1 cut(s)	273
BstKTI	GATC	2 cut(s)	227, 262
BstMBI	GATC	2 cut(s)	224, 259
BstMWI	GCNNNNNNNGC	2 cut(s)	322, 365
BstNSI	RCATGY	2 cut(s)	25, 192
BstPI	GGTNACC	1 cut(s)	273
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	3 cut(s)	322, 337, 352
BsuRI	GGCC	2 cut(s)	106, 292
BtrI	CACGTC	1 cut(s)	350
Cfr13I	GGNCC	1 cut(s)	49
CseI	GACGC	1 cut(s)	108
CspCI	CAANNNNNGTGG	2 cut(s)	282, 317
CviAII	CATG	3 cut(s)	22, 102, 189
CviJI	RGCY	6 cut(s)	106, 165, 269, 292, 305, 365
CviKI_1	RGCY	6 cut(s)	106, 165, 269, 292, 305, 365
DdeI	CTNAG	1 cut(s)	217
DpnI	GATC	2 cut(s)	226, 261
DpnII	GATC	2 cut(s)	224, 259
DriI	GACNNNNNGTC	1 cut(s)	97
EaeI	YGGCCR	1 cut(s)	104
Eam1105I	GACNNNNNGTC	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	269
Eco91I	GGTNACC	1 cut(s)	273
EcoICRI	GAGCTC	1 cut(s)	269
EcoO65I	GGTNACC	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	271
FaeI	CATG	3 cut(s)	25, 105, 192
FaiI	YATR	4 cut(s)	23, 33, 103, 190
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	3 cut(s)	21, 101, 188
FauI	CCCGC	1 cut(s)	364
Fnu4HI	GCNGC	3 cut(s)	326, 336, 366
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	3 cut(s)	326, 336, 366
FspBI	CTAG	2 cut(s)	126, 194
GluI	GCNGC	3 cut(s)	326, 336, 366
HaeIII	GGCC	2 cut(s)	106, 292
HgaI	GACGC	1 cut(s)	108
Hin1II	CATG	3 cut(s)	25, 105, 192
HinfI	GANTC	1 cut(s)	92
HphI	GGTGA	2 cut(s)	254, 267
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	2 cut(s)	162, 229
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	3 cut(s)	145, 240, 368
HpyF10VI	GCNNNNNNNGC	2 cut(s)	322, 365
HpyF3I	CTNAG	1 cut(s)	217
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	3 cut(s)	25, 105, 192
Kzo9I	GATC	2 cut(s)	224, 259
LpnPI	CCDG	2 cut(s)	184, 274
Lsp1109I	GCAGC	3 cut(s)	322, 337, 352
MaeI	CTAG	2 cut(s)	126, 194
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	2 cut(s)	248, 273
MalI	GATC	2 cut(s)	226, 261
MboI	GATC	2 cut(s)	224, 259
MboII	GAAGA	1 cut(s)	149
MhlI	GDGCHC	1 cut(s)	271
MlsI	TGGCCA	1 cut(s)	106
MluCI	AATT	3 cut(s)	153, 202, 369
MluNI	TGGCCA	1 cut(s)	106
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	1 cut(s)	363
Mox20I	TGGCCA	1 cut(s)	106
MscI	TGGCCA	1 cut(s)	106
MseI	TTAA	1 cut(s)	185
MslI	CAYNNNNRTG	1 cut(s)	20
Msp20I	TGGCCA	1 cut(s)	106
MspA1I	CMGCKG	1 cut(s)	365
MwoI	GCNNNNNNNGC	2 cut(s)	322, 365
NdeII	GATC	2 cut(s)	224, 259
NlaIII	CATG	3 cut(s)	25, 105, 192
NlaIV	GGNNCC	1 cut(s)	51
NmuCI	GTSAC	2 cut(s)	248, 273
NspI	RCATGY	2 cut(s)	25, 192
PciI	ACATGT	1 cut(s)	188
PkrI	GCNGC	3 cut(s)	327, 337, 367
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PscI	ACATGT	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	271
PspEI	GGTNACC	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	49
PvuII	CAGCTG	1 cut(s)	365
RseI	CAYNNNNRTG	1 cut(s)	20
SacI	GAGCTC	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	3 cut(s)	326, 336, 366
Sau3AI	GATC	2 cut(s)	224, 259
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	4 cut(s)	143, 271, 352, 367
SfcI	CTRYAG	1 cut(s)	360
SinI	GGWCC	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	20
Sse9I	AATT	3 cut(s)	153, 202, 369
SsiI	CCGC	3 cut(s)	314, 357, 374
SspMI	CTAG	2 cut(s)	126, 194
SstI	GAGCTC	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	1 cut(s)	26
TaqII	GACCGA	1 cut(s)	261
TasI	AATT	3 cut(s)	153, 202, 369
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TseFI	GTSAC	2 cut(s)	248, 273
TseI	GCWGC	3 cut(s)	325, 335, 365
Tsp45I	GTSAC	2 cut(s)	248, 273
TspDTI	ATGAA	2 cut(s)	4, 48
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	1 cut(s)	202
XceI	RCATGY	2 cut(s)	25, 192
XspI	CTAG	2 cut(s)	126, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.