Rroxscaffold_7G00194560

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015764
Physical Location & Seq
Reverse (-)
36492678 .. 36492986
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00194560.1

Sequence Viewer

Length: 309 bp
ATGGGAAGGTGTACCATCGCCGAGGTTGAGGAAGCAAAGGCTGTTCGAGGTCTGTTTCCAATATGGACTACATGCTTGGCATATTCTATTGTATTTGCACAGTCCGGTACTTTCTTCACCAAGCAAGGTGCCACCATGAACAGAACTATTGTGCCCGGTTTTGAGATACCAGCTGCTTCACTTCAATCATTTATATTCCTGGTCATAATGATGATCATACCCATTTATGACCGCATTTTAGTTCCAATAGCAAGAGCTATCACCAGAGAACCCTCCGGCATTACAATGCTACAAAGGATCGGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

102

Amino Acids

11.27

Weight (kDa)

9.3

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 4 - 101 8.5e-22 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 128
AciI CCGC 1 cut(s) 232
AclWI GGATC 1 cut(s) 305
AfaI GTAC 2 cut(s) 13, 109
AgsI TTSAA 1 cut(s) 185
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 2 cut(s) 173, 257
AluI AGCT 2 cut(s) 173, 257
AlwI GGATC 1 cut(s) 305
ApeKI GCWGC 1 cut(s) 173
AsuC2I CCSGG 1 cut(s) 156
AsuHPI GGTGA 2 cut(s) 109, 253
BaeGI GKGCMC 1 cut(s) 156
BanI GGYRCC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 160
BccI CCATC 1 cut(s) 23
BciT130I CCWGG 1 cut(s) 200
BclI TGATCA 1 cut(s) 213
BcnI CCSGG 1 cut(s) 156
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
Bme1390I CCNGG 2 cut(s) 156, 200
BmiI GGNNCC 1 cut(s) 130
BmrFI CCNGG 2 cut(s) 156, 200
BpuMI CCSGG 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 21
BsaWI WCCGGW 1 cut(s) 104
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 21
BseSI GKGCMC 1 cut(s) 156
BseXI GCAGC 1 cut(s) 160
BshNI GGYRCC 1 cut(s) 128
BsiSI CCGG 3 cut(s) 105, 156, 276
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 2 cut(s) 213, 297
BspACI CCGC 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 130
BspPI GGATC 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 2 cut(s) 213, 297
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 102
BstKTI GATC 2 cut(s) 216, 300
BstMBI GATC 2 cut(s) 213, 297
BstNI CCWGG 1 cut(s) 200
BstNSI RCATGY 1 cut(s) 75
BstSCI CCNGG 2 cut(s) 154, 198
BstSLI GKGCMC 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 160
Csp6I GTAC 2 cut(s) 12, 108
CviAII CATG 2 cut(s) 72, 136
CviJI RGCY 3 cut(s) 41, 173, 257
CviKI_1 RGCY 3 cut(s) 41, 173, 257
CviQI GTAC 2 cut(s) 12, 108
DpnI GATC 2 cut(s) 215, 299
DpnII GATC 2 cut(s) 213, 297
EcoRII CCWGG 1 cut(s) 198
FaeI CATG 2 cut(s) 75, 139
FaiI YATR 8 cut(s) 64, 73, 82, 137, 194, 206, 218, 228
FatI CATG 2 cut(s) 71, 135
FbaI TGATCA 1 cut(s) 213
Fnu4HI GCNGC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 174
HapII CCGG 3 cut(s) 105, 156, 276
Hin1II CATG 2 cut(s) 75, 139
HpaII CCGG 3 cut(s) 105, 156, 276
HphI GGTGA 2 cut(s) 109, 253
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 1 cut(s) 302
Hpy8I GTNNAC 1 cut(s) 12
HpyCH4III ACNGT 1 cut(s) 102
HpyCH4V TGCA 1 cut(s) 98
Hsp92II CATG 2 cut(s) 75, 139
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 2 cut(s) 213, 297
LpnPI CCDG 7 cut(s) 118, 169, 183, 185, 212, 277, 289
Lsp1109I GCAGC 1 cut(s) 160
MalI GATC 2 cut(s) 215, 299
MboI GATC 2 cut(s) 213, 297
MboII GAAGA 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 156
MnlI CCTC 4 cut(s) 16, 22, 41, 283
MslI CAYNNNNRTG 2 cut(s) 209, 284
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 3 cut(s) 105, 156, 276
MspR9I CCNGG 2 cut(s) 156, 200
MvaI CCWGG 1 cut(s) 200
NciI CCSGG 1 cut(s) 156
NdeII GATC 2 cut(s) 213, 297
NlaIII CATG 2 cut(s) 75, 139
NlaIV GGNNCC 1 cut(s) 130
NmeAIII GCCGAG 1 cut(s) 46
NspI RCATGY 1 cut(s) 75
PkrI GCNGC 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 130
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 2 cut(s) 13, 109
RsaNI GTAC 2 cut(s) 12, 108
RseI CAYNNNNRTG 2 cut(s) 209, 284
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 2 cut(s) 213, 297
ScrFI CCNGG 2 cut(s) 156, 200
SduI GDGCHC 1 cut(s) 156
SetI ASST 6 cut(s) 11, 27, 52, 130, 175, 259
SmiMI CAYNNNNRTG 2 cut(s) 209, 284
SsiI CCGC 1 cut(s) 232
StyD4I CCNGG 2 cut(s) 154, 198
TaaI ACNGT 1 cut(s) 102
TaqI TCGA 1 cut(s) 46
TseI GCWGC 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 152
XceI RCATGY 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.