Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011098

Physical Location & Seq

Genomic Coordinates Reverse (-)

8222449 .. 8225062

Gene Structure 2614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTTTTGGAATCTGAATTACTGGGATAAGGCAAGTACCCTTGCAGGGGAGGTTGAAAATCCAAGCAAGACATTTCCAAAGGCGCTCCTTGGGGCTGTAGTTGTGGTGGTTTGTTCATATTTGATTCCACTTCTTGCGGGTACAGGAGCCTTAAACTCTCCATCTAGCGAGTGGACTGATGGGTACTTTGCAGAAGTTGGGATGTTAATAGGTGGCGTTTGGCTCAAGTGGTGGATTCAAGCAGCTTCTGCAATGTCTAACTTGGGGTTGTTCGAAGCAGAAATGAGCAGTGATGCATTTCAACTTCTTGGGATGAGCGAGATGGGAATGCTTCCGGCTATATTTGCTTCAAGGTCTAAGTATGGAACACCTACCATAAGCATTTTGTGCTCTGCCACCGGAGTCATCTTCTTGTCGTGGATGAGTTTTCAGGAAATCTTGGAGTTTTTGAATTTCTTATACGCTATAGGAATGCTTCTTGAGTTTGCTGCTTTTATAAAATTGAGAATAAAGAAGCCAGACCTTCACAGACCTTACCGAGTTCCCTTCCAGACATCTGGGGCAATAATGATTTGCCTGCCTCCCGCATTGTTGCTTATTCTCGTTATGTGCTTGGCTTCTCTGAGGACATTCTTAGTAAGTGGTGTGGTGATTATAGTGGGTCTATTGTTATACCCTCTTTTAGTTCATGCAAAGGACCATGGATGGGCACAGTTCGATGCAGAACTACCCACTGAGGCTCCCAAGAATTGTTCGGATGGCCACTCCGTGGTTTCACAGTTGCATCAAGAAGTTCAAGATGAATCTTCTGTTAGCCTTCTCTCAGACTTGCCATCTGTTAAAGCAGAACAAGAATCTTCGACAATGAGGCCAGAAGAAGCCTTCAAATTAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015203 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015846 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902047 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

298

Amino Acids

32.74

Weight (kDa)

5.0

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease	PF00324	13 - 208	6.5e-11	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19553
fragaria_vesca	FvH4_2g03970
malus_domestica	MD05G1096900.v1.1
prunus_persica	Prupe.8G141300_v2.0.a1 Prupe.8G141300_v2.0.a1 Prupe.8G141300_v2.0.a1
pyrus_communis	pycom05g09560
rosa_chinensis	RchiOBHm_Chr6g0253031 RchiOBHm_Chr6g0253191
rosa_laevigata	RLG00000015042
rosa_multiflora	Rmu_sc0002560.1_g000012 Rmu_sc0003855.1_g000010 Rmu_sc0003898.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212180
rosa_rugosa	Rorug05G0542900
rosa_samantha	Rh6AG056900 Rh6BG051500 Rh6CG049300 Rh6DG045000
rosa_wichuraiana	Rw6G005200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	497
AccB7I	CCANNNNNTGG	1 cut(s)	769
AciI	CCGC	2 cut(s)	137, 585
AcoI	YGGCCR	1 cut(s)	760
AcsI	RAATTY	1 cut(s)	451
AdeI	CACNNNGTG	1 cut(s)	769
AfaI	GTAC	3 cut(s)	37, 142, 185
AfiI	CCNNNNNNNGG	4 cut(s)	45, 46, 706, 769
AgsI	TTSAA	7 cut(s)	56, 239, 302, 351, 451, 797, 886
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
Alw21I	GWGCWC	1 cut(s)	392
AlwNI	CAGNNNCTG	1 cut(s)	248
AoxI	GGCC	2 cut(s)	760, 869
ApeKI	GCWGC	2 cut(s)	242, 488
ApoI	RAATTY	1 cut(s)	451
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	697
AsuHPI	GGTGA	1 cut(s)	661
AsuII	TTCGAA	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	697
BaeGI	GKGCMC	1 cut(s)	712
BalI	TGGCCA	1 cut(s)	762
Bbv12I	GWGCWC	1 cut(s)	392
BbvI	GCAGC	2 cut(s)	254, 475
BccI	CCATC	6 cut(s)	169, 173, 316, 699, 752, 841
BfaI	CTAG	1 cut(s)	165
BfmI	CTRYAG	2 cut(s)	96, 465
BfoI	RGCGCY	1 cut(s)	86
BisI	GCNGC	2 cut(s)	243, 489
BlsI	GCNGC	2 cut(s)	244, 490
Bme18I	GGWCC	1 cut(s)	697
BmgT120I	GGNCC	1 cut(s)	697
BmiI	GGNNCC	2 cut(s)	148, 741
BmrI	ACTGGG	1 cut(s)	31
BmsI	GCATC	3 cut(s)	283, 709, 793
BmuI	ACTGGG	1 cut(s)	31
Bpu14I	TTCGAA	1 cut(s)	273
BpuEI	CTTGAG	2 cut(s)	209, 500
BsaJI	CCNNGG	3 cut(s)	88, 700, 768
BsaWI	WCCGGW	1 cut(s)	398
BsaXI	ACNNNNNCTCC	2 cut(s)	724, 754
Bsc4I	CCNNNNNNNGG	4 cut(s)	45, 46, 706, 769
Bse1I	ACTGG	1 cut(s)	26
Bse3DI	GCAATG	1 cut(s)	258
BseDI	CCNNGG	3 cut(s)	88, 700, 768
BseGI	GGATG	5 cut(s)	207, 318, 426, 710, 763
BseLI	CCNNNNNNNGG	4 cut(s)	45, 46, 706, 769
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	3 cut(s)	614, 726, 837
BseNI	ACTGG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	712
BseXI	GCAGC	2 cut(s)	254, 475
BshFI	GGCC	2 cut(s)	762, 871
BsiHKAI	GWGCWC	1 cut(s)	392
BsiSI	CCGG	2 cut(s)	335, 399
BslI	CCNNNNNNNGG	4 cut(s)	45, 46, 706, 769
BsmI	GAATGC	2 cut(s)	333, 477
BsnI	GGCC	2 cut(s)	762, 871
Bsp119I	TTCGAA	1 cut(s)	273
Bsp1286I	GDGCHC	2 cut(s)	392, 712
Bsp19I	CCATGG	1 cut(s)	700
BspACI	CCGC	2 cut(s)	137, 585
BspANI	GGCC	2 cut(s)	762, 871
BspCNI	CTCAG	3 cut(s)	615, 727, 836
BspLI	GGNNCC	2 cut(s)	148, 741
BspT104I	TTCGAA	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	26
BssECI	CCNNGG	3 cut(s)	88, 700, 768
BssT1I	CCWWGG	2 cut(s)	88, 700
Bst4CI	ACNGT	2 cut(s)	714, 780
BstAPI	GCANNNNNTGC	2 cut(s)	248, 387
BstBI	TTCGAA	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	578
BstDEI	CTNAG	5 cut(s)	357, 623, 634, 735, 823
BstDSI	CCRYGG	2 cut(s)	700, 768
BstF5I	GGATG	5 cut(s)	207, 318, 426, 710, 763
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 344, 387
BstSFI	CTRYAG	2 cut(s)	96, 465
BstSLI	GKGCMC	1 cut(s)	712
BstV1I	GCAGC	2 cut(s)	254, 475
BstXI	CCANNNNNNTGG	1 cut(s)	557
BsuRI	GGCC	2 cut(s)	762, 871
BtgI	CCRYGG	2 cut(s)	700, 768
BtsCI	GGATG	5 cut(s)	207, 318, 426, 710, 763
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	2 cut(s)	295, 732
Cac8I	GCNNGC	1 cut(s)	578
CaiI	CAGNNNCTG	1 cut(s)	248
CfoI	GCGC	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	697
Csp6I	GTAC	3 cut(s)	36, 141, 184
CviAII	CATG	2 cut(s)	689, 701
CviQI	GTAC	3 cut(s)	36, 141, 184
DdeI	CTNAG	5 cut(s)	357, 623, 634, 735, 823
DraIII	CACNNNGTG	1 cut(s)	769
EaeI	YGGCCR	1 cut(s)	760
Eco130I	CCWWGG	2 cut(s)	88, 700
Eco47I	GGWCC	1 cut(s)	697
EcoT14I	CCWWGG	2 cut(s)	88, 700
EcoT22I	ATGCAT	1 cut(s)	298
ErhI	CCWWGG	2 cut(s)	88, 700
FaeI	CATG	2 cut(s)	692, 704
FatI	CATG	2 cut(s)	688, 700
FauI	CCCGC	2 cut(s)	130, 592
Fnu4HI	GCNGC	2 cut(s)	243, 489
FokI	GGATG	5 cut(s)	214, 325, 433, 717, 770
Fsp4HI	GCNGC	2 cut(s)	243, 489
FspBI	CTAG	1 cut(s)	165
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	2 cut(s)	243, 489
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	762, 871
HapII	CCGG	2 cut(s)	335, 399
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	2 cut(s)	692, 704
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HinfI	GANTC	6 cut(s)	10, 124, 235, 402, 803, 854
HpaII	CCGG	2 cut(s)	335, 399
HphI	GGTGA	1 cut(s)	661
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	4 cut(s)	15, 624, 757, 826
Hpy188III	TCNNGA	5 cut(s)	431, 479, 550, 788, 797
Hpy8I	GTNNAC	1 cut(s)	174
HpyAV	CCTTC	4 cut(s)	533, 556, 827, 892
HpyCH4III	ACNGT	2 cut(s)	714, 780
HpyCH4V	TGCA	7 cut(s)	44, 191, 251, 296, 692, 722, 784
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 344, 387
HpyF3I	CTNAG	5 cut(s)	357, 623, 634, 735, 823
Hsp92II	CATG	2 cut(s)	692, 704
HspAI	GCGC	1 cut(s)	83
LmnI	GCTCC	3 cut(s)	90, 146, 745
Lsp1109I	GCAGC	2 cut(s)	254, 475
LweI	GCATC	3 cut(s)	283, 709, 793
MaeI	CTAG	1 cut(s)	165
MboII	GAAGA	4 cut(s)	400, 798, 849, 887
MhlI	GDGCHC	2 cut(s)	392, 712
MlsI	TGGCCA	1 cut(s)	762
MluCI	AATT	5 cut(s)	16, 451, 500, 748, 887
MluNI	TGGCCA	1 cut(s)	762
MlyI	GAGTC	1 cut(s)	411
MnlI	CCTC	6 cut(s)	43, 591, 618, 687, 730, 861
Mox20I	TGGCCA	1 cut(s)	762
Mph1103I	ATGCAT	1 cut(s)	298
MscI	TGGCCA	1 cut(s)	762
MseI	TTAA	3 cut(s)	152, 206, 840
Msp20I	TGGCCA	1 cut(s)	762
MspI	CCGG	2 cut(s)	335, 399
Mva1269I	GAATGC	2 cut(s)	333, 477
MwoI	GCNNNNNNNGC	3 cut(s)	248, 344, 387
NcoI	CCATGG	1 cut(s)	700
NlaIII	CATG	2 cut(s)	692, 704
NlaIV	GGNNCC	2 cut(s)	148, 741
NsiI	ATGCAT	1 cut(s)	298
NspV	TTCGAA	1 cut(s)	273
PctI	GAATGC	2 cut(s)	333, 477
PfeI	GAWTC	5 cut(s)	10, 124, 235, 803, 854
PflMI	CCANNNNNTGG	1 cut(s)	769
PkrI	GCNGC	2 cut(s)	244, 490
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
PsiI	TTATAA	1 cut(s)	497
PspN4I	GGNNCC	2 cut(s)	148, 741
PspPI	GGNCC	1 cut(s)	697
PstNI	CAGNNNCTG	1 cut(s)	248
RsaI	GTAC	3 cut(s)	37, 142, 185
RsaNI	GTAC	3 cut(s)	36, 141, 184
SaqAI	TTAA	3 cut(s)	152, 206, 840
SatI	GCNGC	2 cut(s)	243, 489
Sau96I	GGNCC	1 cut(s)	697
SchI	GAGTC	1 cut(s)	411
SduI	GDGCHC	2 cut(s)	392, 712
SetI	ASST	7 cut(s)	54, 214, 247, 356, 373, 525, 535
SfaNI	GCATC	3 cut(s)	283, 709, 793
SfcI	CTRYAG	2 cut(s)	96, 465
SfuI	TTCGAA	1 cut(s)	273
SinI	GGWCC	1 cut(s)	697
SmlI	CTYRAG	2 cut(s)	224, 479
SmoI	CTYRAG	2 cut(s)	224, 479
Sse9I	AATT	5 cut(s)	16, 451, 500, 748, 887
SsiI	CCGC	2 cut(s)	137, 585
SspMI	CTAG	1 cut(s)	165
StyI	CCWWGG	2 cut(s)	88, 700
TaaI	ACNGT	2 cut(s)	714, 780
TaqI	TCGA	3 cut(s)	273, 717, 860
TasI	AATT	5 cut(s)	16, 451, 500, 748, 887
TfiI	GAWTC	5 cut(s)	10, 124, 235, 803, 854
Tru1I	TTAA	3 cut(s)	152, 206, 840
Tru9I	TTAA	3 cut(s)	152, 206, 840
TscAI	CASTG	2 cut(s)	295, 739
TseI	GCWGC	2 cut(s)	242, 488
TspDTI	ATGAA	3 cut(s)	105, 677, 816
TspGWI	ACGGA	1 cut(s)	757
TspRI	CASTG	2 cut(s)	295, 739
Van91I	CCANNNNNTGG	1 cut(s)	769
VpaK11BI	GGWCC	1 cut(s)	697
XapI	RAATTY	1 cut(s)	451
XcmI	CCANNNNNNNNNTGG	1 cut(s)	168
XspI	CTAG	1 cut(s)	165
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.