Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012576

Physical Location & Seq

Genomic Coordinates Forward (+)

11229120 .. 11232137

Gene Structure 3018 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCACTTCCCAACTCATAAGTGCATATTCTTTGCAGTAATCGACTTTGACAATACTGATATCGCCTGGAGACAATATGACTCAATTACTGCAAAGGAGCTCTTTACGCAGTTTGGCTGCTCACAAAAGCTTTATCAGAAAGTCCTAGCACCATTGCTTCAAGTGGGTCTGTTTGCACCAGCAGAACAATGTAGTGCTGCTGCTACTCTGAGCTTGCTATCCTACATCCTTGCTCACCAGATCTTTAAGTCGTGGATGGAGTCTATGACAACCAAAGGTTGCAAGTTTGAGAAAGGTCCAAGTGTAACAGACCTTTTGCTTAATGAGGAAACTGGCTGTATTTCTGAAGTAGTTTGTGGCAAAGAAATGTATAGTGCTGACGCAGTTGTCCTAGCTGTTGGAATCTCCACGCTTCAGAAACTTATTGAAAATAGTGTTGTGTACGAGGGAGGAATTTGTCAAGGTTCGAACCTGGCTACCATCGATGTACTCTCCGTTAAGCTCTGGCTCGATAGGAAGGTGAACATTCCAAATGCAAGCAATGCTTGCTCAGGTTTTGATGATTCGTTTGGGTGGTCTTTCTTTGATTTGAATGTAATTCATGATGACCACAAAGATAGTACAGTAATATATCGTGCCAATGAGTTGTTAGTACTGACAGATAAGCAAATAGTTGCCAAGGTGACATCTTACCTATCAAAGTGCATCAAGGACTTCAAGAATGCTACTGTGATAAATAAGGAGATTGGAAGATTTCCAAAATCCCCGACTCATTTCTTTCCAGTGGGCAGCAAAGTCGACTCGGAAAGGATACACCCAACAACAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amino_oxidase NAD_binding_8

Protein Analysis

276

Amino Acids

30.66

Weight (kDa)

5.98

Isoelectric Point (pI)

32.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012576)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15600
malus_domestica	MD05G1124600.v1.1
prunus_persica	Prupe.8G168300_v2.0.a1
pyrus_communis	pycom05g11860
rosa_chinensis	RchiOBHm_Chr6g0255801 RchiOBHm_Chr6g0278781 RchiOBHm_Chr6g0278801
rosa_laevigata	RLG00000013193
rosa_multiflora	Rmu_sc0004380.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353520 Rroxscaffold_7G00189630 Rroxscaffold_7G00189900
rosa_rugosa	Rorug06G0119000
rosa_samantha	Rh5BG115500 Rh6AG227700 Rh6BG233300 Rh6CG235800 Rh6DG227000
rosa_wichuraiana	Rw6G019980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	386
AccI	GTMKAC	1 cut(s)	798
AcsI	RAATTY	1 cut(s)	453
AcuI	CTGAAG	2 cut(s)	366, 398
AfaI	GTAC	4 cut(s)	443, 489, 622, 654
AgsI	TTSAA	4 cut(s)	161, 428, 592, 718
AjnI	CCWGG	2 cut(s)	65, 471
AluBI	AGCT	5 cut(s)	100, 130, 213, 395, 502
AluI	AGCT	5 cut(s)	100, 130, 213, 395, 502
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	64
ApeKI	GCWGC	4 cut(s)	117, 197, 200, 789
ApoI	RAATTY	1 cut(s)	453
AspS9I	GGNCC	1 cut(s)	296
AsuHPI	GGTGA	3 cut(s)	227, 532, 694
AsuII	TTCGAA	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	4 cut(s)	104, 184, 187, 801
BccI	CCATC	2 cut(s)	250, 488
BcgI	CGANNNNNNTGC	2 cut(s)	778, 812
BciT130I	CCWGG	2 cut(s)	67, 473
BciVI	GTATCC	1 cut(s)	804
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	2 cut(s)	146, 392
BfuI	GTATCC	1 cut(s)	804
BglII	AGATCT	1 cut(s)	240
BisI	GCNGC	4 cut(s)	118, 198, 201, 790
BlsI	GCNGC	4 cut(s)	119, 199, 202, 791
BmcAI	AGTACT	1 cut(s)	654
Bme1390I	CCNGG	2 cut(s)	67, 473
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	296
BmrFI	CCNGG	2 cut(s)	67, 473
BmsI	GCATC	1 cut(s)	714
BpmI	CTGGAG	1 cut(s)	88
Bpu10I	CCTNAGC	1 cut(s)	550
Bpu14I	TTCGAA	1 cut(s)	467
Bsa29I	ATCGAT	1 cut(s)	483
BsaJI	CCNNGG	1 cut(s)	678
Bse1I	ACTGG	2 cut(s)	337, 782
Bse3DI	GCAATG	2 cut(s)	152, 547
BseBI	CCWGG	2 cut(s)	67, 473
BseCI	ATCGAT	1 cut(s)	483
BseDI	CCNNGG	1 cut(s)	678
BseGI	GGATG	2 cut(s)	225, 261
BseMI	GCAATG	2 cut(s)	152, 547
BseMII	CTCAG	2 cut(s)	200, 564
BseNI	ACTGG	2 cut(s)	337, 782
BseXI	GCAGC	4 cut(s)	104, 184, 187, 801
BshVI	ATCGAT	1 cut(s)	483
BsiHKAI	GWGCWC	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	64
BsmI	GAATGC	1 cut(s)	727
Bsp119I	TTCGAA	1 cut(s)	467
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	240
BspCNI	CTCAG	2 cut(s)	201, 563
BspDI	ATCGAT	1 cut(s)	483
BspHI	TCATGA	1 cut(s)	601
BspT104I	TTCGAA	1 cut(s)	467
BsrDI	GCAATG	2 cut(s)	152, 547
BsrI	ACTGG	2 cut(s)	337, 782
BssECI	CCNNGG	1 cut(s)	678
BssMI	GATC	1 cut(s)	240
BssT1I	CCWWGG	1 cut(s)	678
Bst2UI	CCWGG	2 cut(s)	67, 473
Bst4CI	ACNGT	2 cut(s)	625, 730
BstAPI	GCANNNNNTGC	2 cut(s)	542, 546
BstBI	TTCGAA	1 cut(s)	467
BstC8I	GCNNGC	3 cut(s)	215, 538, 547
BstDEI	CTNAG	2 cut(s)	209, 550
BstF5I	GGATG	2 cut(s)	225, 261
BstKTI	GATC	1 cut(s)	243
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	240
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 542, 546
BstNI	CCWGG	2 cut(s)	67, 473
BstSCI	CCNGG	2 cut(s)	65, 471
BstV1I	GCAGC	4 cut(s)	104, 184, 187, 801
BstX2I	RGATCY	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	240
Bsu15I	ATCGAT	1 cut(s)	483
BsuI	GTATCC	1 cut(s)	804
BsuTUI	ATCGAT	1 cut(s)	483
BtsCI	GGATG	2 cut(s)	225, 261
BtsIMutI	CAGTG	1 cut(s)	789
Cac8I	GCNNGC	3 cut(s)	215, 538, 547
CciI	TCATGA	1 cut(s)	601
Cfr13I	GGNCC	1 cut(s)	296
ClaI	ATCGAT	1 cut(s)	483
CseI	GACGC	1 cut(s)	389
Csp6I	GTAC	4 cut(s)	442, 488, 621, 653
CviAII	CATG	1 cut(s)	602
CviJI	RGCY	9 cut(s)	100, 117, 130, 213, 336, 395, 476, 502, 508
CviKI_1	RGCY	9 cut(s)	100, 117, 130, 213, 336, 395, 476, 502, 508
CviQI	GTAC	4 cut(s)	442, 488, 621, 653
DdeI	CTNAG	2 cut(s)	209, 550
DpnI	GATC	1 cut(s)	242
DpnII	GATC	1 cut(s)	240
DrdI	GACNNNNNNGTC	1 cut(s)	386
DseDI	GACNNNNNNGTC	1 cut(s)	386
Ecl136II	GAGCTC	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	678
Eco24I	GRGCYC	1 cut(s)	102
Eco32I	GATATC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	296
Eco53kI	GAGCTC	1 cut(s)	100
Eco57I	CTGAAG	2 cut(s)	366, 398
EcoICRI	GAGCTC	1 cut(s)	100
EcoRII	CCWGG	2 cut(s)	65, 471
EcoRV	GATATC	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	678
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	678
FaeI	CATG	1 cut(s)	605
FaiI	YATR	7 cut(s)	18, 26, 78, 266, 372, 603, 631
FalI	AAGNNNNNCTT	4 cut(s)	86, 118, 529, 561
FatI	CATG	1 cut(s)	601
FblI	GTMKAC	1 cut(s)	798
Fnu4HI	GCNGC	4 cut(s)	118, 198, 201, 790
FokI	GGATG	2 cut(s)	212, 268
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	4 cut(s)	118, 198, 201, 790
FspBI	CTAG	2 cut(s)	146, 392
GluI	GCNGC	4 cut(s)	118, 198, 201, 790
GsuI	CTGGAG	1 cut(s)	88
HgaI	GACGC	1 cut(s)	389
Hin1II	CATG	1 cut(s)	605
HincII	GTYRAC	1 cut(s)	799
HindII	GTYRAC	1 cut(s)	799
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	6 cut(s)	80, 260, 402, 563, 769, 800
HphI	GGTGA	3 cut(s)	227, 532, 694
Hpy166II	GTNNAC	3 cut(s)	442, 523, 799
Hpy188I	TCNGA	5 cut(s)	138, 210, 346, 417, 805
Hpy188III	TCNNGA	2 cut(s)	602, 718
Hpy8I	GTNNAC	3 cut(s)	442, 523, 799
HpyAV	CCTTC	1 cut(s)	511
HpyCH4III	ACNGT	2 cut(s)	625, 730
HpyCH4V	TGCA	8 cut(s)	4, 24, 35, 92, 176, 282, 536, 705
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 542, 546
HpyF3I	CTNAG	2 cut(s)	209, 550
Hsp92II	CATG	1 cut(s)	605
Kzo9I	GATC	1 cut(s)	240
LmnI	GCTCC	1 cut(s)	97
Lsp1109I	GCAGC	4 cut(s)	104, 184, 187, 801
LweI	GCATC	1 cut(s)	714
MaeI	CTAG	2 cut(s)	146, 392
MaeIII	GTNAC	2 cut(s)	304, 682
MalI	GATC	1 cut(s)	242
MboI	GATC	1 cut(s)	240
MboII	GAAGA	1 cut(s)	762
MflI	RGATCY	1 cut(s)	240
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	3 cut(s)	84, 453, 597
MlyI	GAGTC	4 cut(s)	74, 269, 763, 794
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	3 cut(s)	319, 439, 443
MseI	TTAA	3 cut(s)	246, 321, 498
MspR9I	CCNGG	2 cut(s)	67, 473
Mva1269I	GAATGC	1 cut(s)	727
MvaI	CCWGG	2 cut(s)	67, 473
MwoI	GCNNNNNNNGC	3 cut(s)	106, 542, 546
NdeII	GATC	1 cut(s)	240
NlaIII	CATG	1 cut(s)	605
NmuCI	GTSAC	1 cut(s)	682
NspV	TTCGAA	1 cut(s)	467
PagI	TCATGA	1 cut(s)	601
PctI	GAATGC	1 cut(s)	727
PfeI	GAWTC	2 cut(s)	402, 563
PkrI	GCNGC	4 cut(s)	119, 199, 202, 791
PleI	GAGTC	4 cut(s)	74, 268, 763, 794
PpsI	GAGTC	4 cut(s)	74, 268, 763, 794
Psp124BI	GAGCTC	1 cut(s)	102
Psp6I	CCWGG	2 cut(s)	65, 471
PspGI	CCWGG	2 cut(s)	65, 471
PspPI	GGNCC	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	240
RsaI	GTAC	4 cut(s)	443, 489, 622, 654
RsaNI	GTAC	4 cut(s)	442, 488, 621, 653
SacI	GAGCTC	1 cut(s)	102
SalI	GTCGAC	1 cut(s)	797
SaqAI	TTAA	3 cut(s)	246, 321, 498
SatI	GCNGC	4 cut(s)	118, 198, 201, 790
Sau3AI	GATC	1 cut(s)	240
Sau96I	GGNCC	1 cut(s)	296
ScaI	AGTACT	1 cut(s)	654
SchI	GAGTC	4 cut(s)	74, 269, 763, 794
ScrFI	CCNGG	2 cut(s)	67, 473
SduI	GDGCHC	1 cut(s)	102
SfaNI	GCATC	1 cut(s)	714
SfuI	TTCGAA	1 cut(s)	467
SinI	GGWCC	1 cut(s)	296
Sse9I	AATT	3 cut(s)	84, 453, 597
SspMI	CTAG	2 cut(s)	146, 392
SstI	GAGCTC	1 cut(s)	102
StyD4I	CCNGG	2 cut(s)	65, 471
StyI	CCWWGG	1 cut(s)	678
TaaI	ACNGT	2 cut(s)	625, 730
TaqI	TCGA	5 cut(s)	42, 467, 483, 510, 798
TasI	AATT	3 cut(s)	84, 453, 597
TatI	WGTACW	3 cut(s)	487, 620, 652
TfiI	GAWTC	2 cut(s)	402, 563
Tru1I	TTAA	3 cut(s)	246, 321, 498
Tru9I	TTAA	3 cut(s)	246, 321, 498
TscAI	CASTG	1 cut(s)	789
TseFI	GTSAC	1 cut(s)	682
TseI	GCWGC	4 cut(s)	117, 197, 200, 789
Tsp45I	GTSAC	1 cut(s)	682
TspDTI	ATGAA	1 cut(s)	590
TspGWI	ACGGA	1 cut(s)	484
TspRI	CASTG	1 cut(s)	789
VpaK11BI	GGWCC	1 cut(s)	296
XapI	RAATTY	1 cut(s)	453
XmiI	GTMKAC	1 cut(s)	798
XspI	CTAG	2 cut(s)	146, 392
ZrmI	AGTACT	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.