RchiOBHm_Chr6g0260471

One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0007092
Physical Location & Seq
Forward (+)
15434643 .. 15435251
609 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 486 bp
ATGGACAACGGGGATGGAATAACTGTTGGGTGGTTAGGACATCCTATCTTTAGAGATAAAGAGGGGCATGAACTTTTTGTACGTCCCGATGTTCCTTTTAGAAGGGCAGAATCAAAATATAGTGTCAAACAAGTAGGTGTAACTGCTGAGTTTTATGGCGGCGAACTGAATGGAGTTAGTTACAGTGACCCTACTACTGTGAAAAAATATGCTAGATGTGCTCAATTGGGTGAAATTTTTGGATTAGACCGTGCTACTTTGAAATCCGATGGTGTTTTTCGTAGCAGTCCAAGGGGTTGGTTTACCTTTGGGCATGCTTCGTTTGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCTAGAACCTTTTTTAGAGATGTTTTTGCTGGTATTGATCCGGATTTAGATGCTCAAGTGGAATTTGGAGCATTCCAAAAACTTGGAGATCCAACTACACAAAGACAGGGTTGGGGTACCGGATAA

Protein Analysis

161

Amino Acids

17.95

Weight (kDa)

6.51

Isoelectric Point (pI)

26.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSII PF00421 1 - 150 5e-61 Photosystem II protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 476
AccB1I GGYRCC 1 cut(s) 476
AccIII TCCGGA 1 cut(s) 400
AciI CCGC 1 cut(s) 159
AclWI GGATC 2 cut(s) 392, 443
AcsI RAATTY 2 cut(s) 234, 422
AfaI GTAC 2 cut(s) 81, 478
AgsI TTSAA 1 cut(s) 262
Alw21I GWGCWC 1 cut(s) 223
AlwI GGATC 2 cut(s) 392, 443
Aor13HI TCCGGA 1 cut(s) 400
ApoI RAATTY 2 cut(s) 234, 422
Asp718I GGTACC 1 cut(s) 476
AsuHPI GGTGA 1 cut(s) 242
BanI GGYRCC 1 cut(s) 476
Bbv12I GWGCWC 1 cut(s) 223
BccI CCATC 2 cut(s) 8, 263
BfaI CTAG 2 cut(s) 213, 363
BisI GCNGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 161
BmiI GGNNCC 1 cut(s) 478
BmsI GCATC 1 cut(s) 400
BpuEI CTTGAG 1 cut(s) 399
BsaJI CCNNGG 1 cut(s) 290
BsaWI WCCGGW 2 cut(s) 400, 479
BseAI TCCGGA 1 cut(s) 400
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 2 cut(s) 19, 40
BseMII CTCAG 1 cut(s) 138
BshNI GGYRCC 1 cut(s) 476
BsiHKAI GWGCWC 1 cut(s) 223
BsiSI CCGG 2 cut(s) 401, 480
BslFI GGGAC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 69
BsmI GAATGC 1 cut(s) 431
Bsp1286I GDGCHC 1 cut(s) 223
Bsp13I TCCGGA 1 cut(s) 400
Bsp143I GATC 2 cut(s) 397, 448
BspACI CCGC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 139
BspEI TCCGGA 1 cut(s) 400
BspLI GGNNCC 1 cut(s) 478
BspPI GGATC 2 cut(s) 392, 443
BspQI GCTCTTC 1 cut(s) 338
BspT107I GGYRCC 1 cut(s) 476
BssECI CCNNGG 1 cut(s) 290
BssMI GATC 2 cut(s) 397, 448
BssT1I CCWWGG 1 cut(s) 290
Bst4CI ACNGT 4 cut(s) 25, 185, 199, 251
Bst6I CTCTTC 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 1 cut(s) 147
BstF5I GGATG 2 cut(s) 19, 40
BstKTI GATC 2 cut(s) 400, 451
BstMBI GATC 2 cut(s) 397, 448
BstMWI GCNNNNNNNGC 2 cut(s) 218, 323
BstNSI RCATGY 1 cut(s) 317
BstX2I RGATCY 1 cut(s) 448
BstXI CCANNNNNNTGG 2 cut(s) 297, 443
BstYI RGATCY 1 cut(s) 448
BtsCI GGATG 2 cut(s) 19, 40
BtsIMutI CAGTG 1 cut(s) 190
Cac8I GCNNGC 1 cut(s) 315
Csp6I GTAC 2 cut(s) 80, 477
CviAII CATG 3 cut(s) 68, 314, 356
CviQI GTAC 2 cut(s) 80, 477
DdeI CTNAG 1 cut(s) 147
DpnI GATC 2 cut(s) 399, 450
DpnII GATC 2 cut(s) 397, 448
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
Eco130I CCWWGG 1 cut(s) 290
EcoT14I CCWWGG 1 cut(s) 290
ErhI CCWWGG 1 cut(s) 290
FaeI CATG 3 cut(s) 71, 317, 359
FaiI YATR 6 cut(s) 69, 120, 156, 210, 315, 357
FaqI GGGAC 1 cut(s) 69
FatI CATG 3 cut(s) 67, 313, 355
Fnu4HI GCNGC 1 cut(s) 160
FokI GGATG 2 cut(s) 26, 27
Fsp4HI GCNGC 1 cut(s) 160
FspBI CTAG 2 cut(s) 213, 363
GluI GCNGC 1 cut(s) 160
HapII CCGG 2 cut(s) 401, 480
Hin1II CATG 3 cut(s) 71, 317, 359
HinfI GANTC 1 cut(s) 110
HpaII CCGG 2 cut(s) 401, 480
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 2 cut(s) 268, 344
Hpy188III TCNNGA 2 cut(s) 86, 401
Hpy8I GTNNAC 1 cut(s) 303
HpyAV CCTTC 1 cut(s) 96
HpyCH4III ACNGT 4 cut(s) 25, 185, 199, 251
HpyCH4IV ACGT 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 323
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 3 cut(s) 71, 317, 359
Kpn2I TCCGGA 1 cut(s) 400
KpnI GGTACC 1 cut(s) 480
Kzo9I GATC 2 cut(s) 397, 448
LguI GCTCTTC 1 cut(s) 338
LmnI GCTCC 1 cut(s) 428
LpnPI CCDG 3 cut(s) 375, 414, 452
LweI GCATC 1 cut(s) 400
MaeI CTAG 2 cut(s) 213, 363
MaeII ACGT 1 cut(s) 82
MaeIII GTNAC 3 cut(s) 139, 179, 185
MalI GATC 2 cut(s) 399, 450
MboI GATC 2 cut(s) 397, 448
MboII GAAGA 3 cut(s) 325, 328, 331
MfeI CAATTG 1 cut(s) 224
MflI RGATCY 1 cut(s) 448
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 3 cut(s) 224, 234, 422
MmeI TCCRAC 1 cut(s) 476
MnlI CCTC 1 cut(s) 55
MroI TCCGGA 1 cut(s) 400
MspI CCGG 2 cut(s) 401, 480
MunI CAATTG 1 cut(s) 224
Mva1269I GAATGC 1 cut(s) 431
MwoI GCNNNNNNNGC 2 cut(s) 218, 323
NdeII GATC 2 cut(s) 397, 448
NlaIII CATG 3 cut(s) 71, 317, 359
NlaIV GGNNCC 1 cut(s) 478
NmuCI GTSAC 1 cut(s) 185
NspI RCATGY 1 cut(s) 317
PaeI GCATGC 1 cut(s) 317
PciSI GCTCTTC 1 cut(s) 338
PctI GAATGC 1 cut(s) 431
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 478
PsrI GAACNNNNNNTAC 2 cut(s) 63, 95
PsuI RGATCY 1 cut(s) 448
RsaI GTAC 2 cut(s) 81, 478
RsaNI GTAC 2 cut(s) 80, 477
SapI GCTCTTC 1 cut(s) 338
SatI GCNGC 1 cut(s) 160
Sau3AI GATC 2 cut(s) 397, 448
SduI GDGCHC 1 cut(s) 223
SetI ASST 4 cut(s) 85, 139, 308, 371
SfaNI GCATC 1 cut(s) 400
SmlI CTYRAG 1 cut(s) 414
SmoI CTYRAG 1 cut(s) 414
SphI GCATGC 1 cut(s) 317
Sse9I AATT 3 cut(s) 224, 234, 422
SsiI CCGC 1 cut(s) 159
SspMI CTAG 2 cut(s) 213, 363
StyI CCWWGG 1 cut(s) 290
TaaI ACNGT 4 cut(s) 25, 185, 199, 251
TaiI ACGT 1 cut(s) 85
TasI AATT 3 cut(s) 224, 234, 422
TauI GCSGC 1 cut(s) 162
TfiI GAWTC 1 cut(s) 110
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 1 cut(s) 84
TspRI CASTG 1 cut(s) 190
XapI RAATTY 2 cut(s) 234, 422
XceI RCATGY 1 cut(s) 317
XspI CTAG 2 cut(s) 213, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.