Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010853

Physical Location & Seq

Genomic Coordinates Forward (+)

54331788 .. 54337072

Gene Structure 5285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2289 bp

ATGAAGTTCCAAATGGACGACGTCACCGTGTACTTCCCCTACGACCACATCTACCCGGAGCAATACGCCTACATGCTGGAACTGAAACGCGCCCTGGACGCGCGAGGCCACTGCCTCCTGGAAATGCCGACGGGCACCGGAAAAACCATCGCCCTCCTCTCGCTCATCACCAGCTACAGTCTCTCCAAGCCCTACAACCCCGTCAAGCTCATCTACTGCACCCGCACCGTCCACGAGATGGAGAAGACGCTCGCCGAGCTCAAGCTCCTCCATAAATACCAGGTCCAGCATCTCGGAAAACAGGCGGAGATCCTCGCCATCGGGCTCTCTAGTCGCAAGAACCTCTGCGTTAACCCTAATGTGCTTGCCGCCGAGAATCGCGACTCCGTGGACGCCGCTTGCCGCAAATTGACAGCCAGCTGGGTCCGCGCCGCCGCGATCGGGAACCCTAATGTGCCGAGCTGTGAGTTTTTTGAGCAGTTTGAGAGGGCCGGGCAAGGTATCGTCTTGCCTTCTGGGGTTTACACCTTGCAGGATTTGAGGGCGTTTGGGAAGGCCGAAGGGTGGTGCCCTTACTTTTTGGCGAGGAGAATGGTCGAGGCGGCCAATGTGGTGGTTTATAGTTATCAGTATTTGCTTGATCCCAAAGTGGCTGGGATTATATCTAAGGAGTTGCAGAAGGAGTCGGTTGTGGTGTTCGATGAGGCTCACAATATAGACAATGTGTGTATCGAGGCGCTTAGTGTTAGTGTGAGGAGGCAGACGCTTGAGGGGGCTCGAAGGAATCTCAGTAAGATGCAGCAGGATATTGAAAGCAATGGTAGGTTCAAGGCCACAGACGCAGGAAGATTGCGACAAGAATACAACCGGCTTGTTGAGGGTTTGGCACAAGGAGGAAACCTACCCATCACGGATGCTTGGCTTCAGAACCCTGCCCTACCTGACGATATTCTGAAGGAGGCTGTGCCCGGAAATATTCGCAAAGCGGACCACTTTCTGCATGTCTTACGAAGATTGGTCCAGTATCTCGAAGGGCGTCTTGAAACCGAGAACGTTGAGAAGGAGCTTCCTGTTGGCTTTGTTAACTCAATTAATACCCAAGCTGGAATTGACCAGAAAACTCTCAAGTTCTGCTATGATCGTCTACACTCACTCATGATGACATTAGAAATTACCGACACAGACGAGTTCTTACACATCCAAACTATATGCGACTTTGCGACGCTTGTGGGAACATATGCCCGTGGTTTCTCTATCATAATTGAGCCATTTGACGAGAGAATGCCACACATTCCTGATCCTGTTTTGCAGCTTAGTTGTCATGATGCTTCTCTTGCTATAAAGCCTGTATTTGATCGATTTCAATCGGTTGTGATTACATCTGGAACCTTGAGCCCGATTGATCTCTACCCCCGTCTTCTCAATTTTAACCCTGTTGTGAGTCGAAGCTTTACAATGTCACTAACGAGAGAATGCATATGCCCAATGGTTCTCACCCGGGGAAGTGATCAGCTTCCTGTAAGTACAAAATTTGATATGAGAAGTGATCTAGGAGTGGTAAGGAATTATGGGAGGCTGCTGCTGGAGATGGTTTCTGTTGTTCCAGATGGGGTCGTATGTTTTTTTGTCAGCTACTCATATATGGACGGTATAGTGAACAGTTGGAATGAAAGCGGAATATTAAAGGAAATAATGCAGCATAAGCTCGTGTTCATTGAGACCCAAGATGTGGTAGAGACAACTTTGGCTTTGGACAACTACCGCAAAGCTTGCGATTGTGGGAGAGGTGCTGTCTTCTTTTCTGTGGCCAGGGGAAAAGTAGCTGAAGGAATAGACTTCGATCGTCATTATGGACGATTGGTCATCATGTACGGTGTTCCATTTCAGTACACGTTAAGCAAGATTTTGCTTGCACGGCTTGAGTACTTGAGGGAGACCTTTCAGATAAAGGAAGGAGATTTCTTGACCTTTGACGCTTTGAGACAAGCTGCCCAATGTGTCGGCCGGGTTATCCGGTCAAAAGCGGACTACGGCATGATGATTTTCGCGGATAAAAGGTATAGCCGTCATGACAAGCGGTCTAAGCTGCCAGGATGGATCCTCTCCCATCTGAGGGATGCGCACCTCAACTTGAGCACTGATATGGCTCTTCATATAGCACGAGAGTTCCTCAGAAAGATGGCCCAGCCATATGACAGGACTGGTGGCAGCAGCGGCAGGAAGACACTCCTGTCCCAGGACGACTTGGAGAGGATGGGCCAAGGAATCACTCATGAAATGTTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

DEAD_2 HBB Helicase_C_2

Protein Analysis

762

Amino Acids

86.37

Weight (kDa)

7.02

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD_2	PF06733	72 - 256	7.8e-52	DEAD_2
HBB	PF06777	275 - 415	1.7e-39	Helical and beta-bridge domain
Helicase_C_2	PF13307	527 - 700	6.7e-38	Helicase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03190 AT1G03190
fragaria_vesca	FvH4_2g23690
malus_domestica	MD03G1266200.v1.1 MD11G1286800.v1.1
prunus_persica	Prupe.8G242000_v2.0.a1 Prupe.8G242000_v2.0.a1
pyrus_communis	pycom03g21270
rosa_chinensis	RchiOBHm_Chr6g0291151
rosa_laevigata	RLG00000012140
rosa_multiflora	Rmu_co8311277.1_g000001 Rmu_sc0004642.1_g000023 Rmu_sc0013275.1_g000002
rosa_roxburghii	Rroxscaffold_7G00176340
rosa_rugosa	Rorug06G0218000
rosa_samantha	Rh6AG328400 Rh6BG336000 Rh6CG342000 Rh6DG329300
rosa_wichuraiana	Rw6G028570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2230
AatII	GACGTC	1 cut(s)	24
Acc16I	TGCGCA	1 cut(s)	2121
AccB1I	GGYRCC	2 cut(s)	134, 567
AccB7I	CCANNNNNTGG	2 cut(s)	238, 1729
AccI	GTMKAC	1 cut(s)	1144
AccII	CGCG	7 cut(s)	90, 101, 103, 381, 429, 437, 2048
AclI	AACGTT	1 cut(s)	1053
AclWI	GGATC	5 cut(s)	304, 635, 1292, 2092, 2105
AcoI	YGGCCR	3 cut(s)	603, 1806, 2002
AcsI	RAATTY	1 cut(s)	1529
AcuI	CTGAAG	3 cut(s)	908, 974, 1845
AcyI	GRCGYC	3 cut(s)	21, 393, 1036
AfaI	GTAC	5 cut(s)	32, 1525, 1871, 1889, 1925
AfiI	CCNNNNNNNGG	7 cut(s)	238, 441, 564, 1729, 2112, 2113, 2236
AflIII	ACRYGT	1 cut(s)	1890
AgsI	TTSAA	4 cut(s)	812, 829, 1043, 1364
AhdI	GACNNNNNGTC	2 cut(s)	1859, 2077
AjnI	CCWGG	6 cut(s)	93, 117, 279, 1808, 2089, 2235
Alw21I	GWGCWC	2 cut(s)	261, 2138
Alw26I	GTCTC	5 cut(s)	185, 1712, 1730, 1928, 1975
AlwI	GGATC	5 cut(s)	304, 635, 1292, 2092, 2105
Ama87I	CYCGRG	1 cut(s)	1497
AoxI	GGCC	9 cut(s)	106, 489, 555, 603, 831, 1806, 2002, 2181, 2257
ApeKI	GCWGC	9 cut(s)	799, 1309, 1576, 1579, 1696, 1988, 2086, 2208, 2211
ApoI	RAATTY	1 cut(s)	1529
AseI	ATTAAT	1 cut(s)	1092
AspLEI	GCGC	5 cut(s)	92, 103, 431, 739, 2122
AspS9I	GGNCC	7 cut(s)	283, 424, 489, 988, 1018, 2182, 2257
AsuC2I	CCSGG	6 cut(s)	56, 493, 969, 1498, 1499, 2006
AsuHPI	GGTGA	3 cut(s)	16, 160, 1486
AvaI	CYCGRG	1 cut(s)	1497
AvaII	GGWCC	4 cut(s)	283, 424, 988, 1018
BaeGI	GKGCMC	3 cut(s)	137, 572, 969
BalI	TGGCCA	1 cut(s)	1808
BamHI	GGATCC	1 cut(s)	2097
BanI	GGYRCC	2 cut(s)	134, 567
BanII	GRGCYC	4 cut(s)	261, 327, 778, 1397
BauI	CACGAG	3 cut(s)	233, 1706, 2160
BbsI	GAAGAC	4 cut(s)	251, 1409, 1786, 2228
Bbv12I	GWGCWC	2 cut(s)	261, 2138
BbvI	GCAGC	9 cut(s)	811, 1321, 1563, 1566, 1708, 1975, 2073, 2220, 2223
BceAI	ACGGC	3 cut(s)	1931, 2047, 2049
BcgI	CGANNNNNNTGC	2 cut(s)	93, 127
BciT130I	CCWGG	6 cut(s)	95, 119, 281, 1810, 2091, 2237
BclI	TGATCA	1 cut(s)	1507
BcnI	CCSGG	6 cut(s)	56, 493, 969, 1498, 1499, 2006
BcoDI	GTCTC	5 cut(s)	185, 1712, 1730, 1928, 1975
BfaI	CTAG	2 cut(s)	330, 1550
BfmI	CTRYAG	1 cut(s)	175
BfoI	RGCGCY	1 cut(s)	740
BmcAI	AGTACT	1 cut(s)	1925
Bme18I	GGWCC	4 cut(s)	283, 424, 988, 1018
BmeRI	GACNNNNNGTC	2 cut(s)	1859, 2077
BmeT110I	CYCGRG	1 cut(s)	1497
BmgT120I	GGNCC	7 cut(s)	283, 424, 489, 988, 1018, 2182, 2257
BmiI	GGNNCC	6 cut(s)	136, 425, 446, 569, 1387, 2099
BmsI	GCATC	5 cut(s)	298, 786, 904, 1315, 2107
BpiI	GAAGAC	4 cut(s)	251, 1409, 1786, 2228
BplI	GAGNNNNNCTC	2 cut(s)	2154, 2186
BpmI	CTGGAG	1 cut(s)	1604
BpuEI	CTTGAG	7 cut(s)	245, 788, 1109, 1411, 1940, 1948, 2152
BpuMI	CCSGG	6 cut(s)	56, 493, 969, 1498, 1499, 2006
Bsa29I	ATCGAT	1 cut(s)	1357
BsaBI	GATNNNNATC	1 cut(s)	1363
BsaHI	GRCGYC	3 cut(s)	21, 393, 1036
BsaI	GGTCTC	2 cut(s)	1712, 1928
BsaJI	CCNNGG	8 cut(s)	93, 387, 1243, 1497, 1498, 1809, 2235, 2260
BsaWI	WCCGGW	2 cut(s)	137, 2013
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	7 cut(s)	238, 441, 564, 1729, 2112, 2113, 2236
Bse118I	RCCGGY	1 cut(s)	867
Bse1I	ACTGG	2 cut(s)	1021, 2206
Bse3DI	GCAATG	1 cut(s)	823
Bse8I	GATNNNNATC	1 cut(s)	1363
BseBI	CCWGG	6 cut(s)	95, 119, 281, 1810, 2091, 2237
BseCI	ATCGAT	1 cut(s)	1357
BseDI	CCNNGG	8 cut(s)	93, 387, 1243, 1497, 1498, 1809, 2235, 2260
BseGI	GGATG	5 cut(s)	919, 1197, 2099, 2122, 2259
BseJI	GATNNNNATC	1 cut(s)	1363
BseLI	CCNNNNNNNGG	7 cut(s)	238, 441, 564, 1729, 2112, 2113, 2236
BseMI	GCAATG	1 cut(s)	823
BseMII	CTCAG	3 cut(s)	802, 2102, 2185
BseNI	ACTGG	2 cut(s)	1021, 2206
BseRI	GAGGAG	4 cut(s)	146, 257, 601, 769
BseSI	GKGCMC	3 cut(s)	137, 572, 969
BseX3I	CGGCCG	1 cut(s)	2002
BseXI	GCAGC	9 cut(s)	811, 1321, 1563, 1566, 1708, 1975, 2073, 2220, 2223
BseYI	CCCAGC	3 cut(s)	420, 653, 2184
BsgI	GTGCAG	1 cut(s)	202
Bsh1236I	CGCG	7 cut(s)	90, 101, 103, 381, 429, 437, 2048
Bsh1285I	CGRYCG	3 cut(s)	441, 1843, 2005
BshFI	GGCC	9 cut(s)	108, 491, 557, 605, 833, 1808, 2004, 2183, 2259
BshNI	GGYRCC	2 cut(s)	134, 567
BshVI	ATCGAT	1 cut(s)	1357
BsiEI	CGRYCG	3 cut(s)	441, 1843, 2005
BsiHKAI	GWGCWC	2 cut(s)	261, 2138
BsiHKCI	CYCGRG	1 cut(s)	1497
BsiSI	CCGG	8 cut(s)	56, 138, 492, 868, 969, 1498, 2005, 2014
BslFI	GGGAC	1 cut(s)	2218
BslI	CCNNNNNNNGG	7 cut(s)	238, 441, 564, 1729, 2112, 2113, 2236
BsmAI	GTCTC	5 cut(s)	185, 1712, 1730, 1928, 1975
BsmFI	GGGAC	1 cut(s)	2218
BsmI	GAATGC	2 cut(s)	1287, 1478
BsnI	GGCC	9 cut(s)	108, 491, 557, 605, 833, 1808, 2004, 2183, 2259
Bso31I	GGTCTC	2 cut(s)	1712, 1928
BsoBI	CYCGRG	1 cut(s)	1497
Bsp1286I	GDGCHC	8 cut(s)	137, 261, 327, 572, 778, 969, 1397, 2138
Bsp68I	TCGCGA	1 cut(s)	381
BspANI	GGCC	9 cut(s)	108, 491, 557, 605, 833, 1808, 2004, 2183, 2259
BspCNI	CTCAG	3 cut(s)	801, 2103, 2184
BspDI	ATCGAT	1 cut(s)	1357
BspFNI	CGCG	7 cut(s)	90, 101, 103, 381, 429, 437, 2048
BspHI	TCATGA	4 cut(s)	1155, 1321, 2068, 2272
BspLI	GGNNCC	6 cut(s)	136, 425, 446, 569, 1387, 2099
BspPI	GGATC	5 cut(s)	304, 635, 1292, 2092, 2105
BspQI	GCTCTTC	1 cut(s)	2154
BspT107I	GGYRCC	2 cut(s)	134, 567
BspTNI	GGTCTC	2 cut(s)	1712, 1928
BsrDI	GCAATG	1 cut(s)	823
BsrFI	RCCGGY	1 cut(s)	867
BsrI	ACTGG	2 cut(s)	1021, 2206
BssAI	RCCGGY	1 cut(s)	867
BssECI	CCNNGG	8 cut(s)	93, 387, 1243, 1497, 1498, 1809, 2235, 2260
BssNI	GRCGYC	3 cut(s)	21, 393, 1036
BssSI	CACGAG	3 cut(s)	233, 1706, 2160
BssT1I	CCWWGG	1 cut(s)	2260
Bst2BI	CACGAG	3 cut(s)	233, 1706, 2160
Bst2UI	CCWGG	6 cut(s)	95, 119, 281, 1810, 2091, 2237
Bst4CI	ACNGT	6 cut(s)	28, 179, 229, 1649, 1661, 1874
Bst6I	CTCTTC	1 cut(s)	2154
BstACI	GRCGYC	3 cut(s)	21, 393, 1036
BstAPI	GCANNNNNTGC	1 cut(s)	1770
BstC8I	GCNNGC	6 cut(s)	252, 366, 400, 418, 1771, 1911
BstDEI	CTNAG	7 cut(s)	666, 740, 788, 1313, 2082, 2111, 2171
BstDSI	CCRYGG	2 cut(s)	387, 1243
BstENI	CCTNNNNNAGG	1 cut(s)	2234
BstF5I	GGATG	5 cut(s)	919, 1197, 2099, 2122, 2259
BstFNI	CGCG	7 cut(s)	90, 101, 103, 381, 429, 437, 2048
BstH2I	RGCGCY	1 cut(s)	740
BstHHI	GCGC	5 cut(s)	92, 103, 431, 739, 2122
BstMAI	GTCTC	5 cut(s)	185, 1712, 1730, 1928, 1975
BstMCI	CGRYCG	3 cut(s)	441, 1843, 2005
BstNI	CCWGG	6 cut(s)	95, 119, 281, 1810, 2091, 2237
BstNSI	RCATGY	2 cut(s)	76, 1004
BstSFI	CTRYAG	1 cut(s)	175
BstSLI	GKGCMC	3 cut(s)	137, 572, 969
BstUI	CGCG	7 cut(s)	90, 101, 103, 381, 429, 437, 2048
BstV1I	GCAGC	9 cut(s)	811, 1321, 1563, 1566, 1708, 1975, 2073, 2220, 2223
BstV2I	GAAGAC	4 cut(s)	251, 1409, 1786, 2228
BstX2I	RGATCY	2 cut(s)	309, 2097
BstXI	CCANNNNNNTGG	1 cut(s)	613
BstYI	RGATCY	2 cut(s)	309, 2097
BstZI	CGGCCG	1 cut(s)	2002
Bsu15I	ATCGAT	1 cut(s)	1357
BsuRI	GGCC	9 cut(s)	108, 491, 557, 605, 833, 1808, 2004, 2183, 2259
BsuTUI	ATCGAT	1 cut(s)	1357
BtgI	CCRYGG	2 cut(s)	387, 1243
BtgZI	GCGATG	1 cut(s)	133
BtsCI	GGATG	5 cut(s)	919, 1197, 2099, 2122, 2259
BtsI	GCAGTG	1 cut(s)	109
BtsIMutI	CAGTG	2 cut(s)	109, 2136
BtuMI	TCGCGA	1 cut(s)	381
Cac8I	GCNNGC	6 cut(s)	252, 366, 400, 418, 1771, 1911
CciI	TCATGA	4 cut(s)	1155, 1321, 2068, 2272
CfoI	GCGC	5 cut(s)	92, 103, 431, 739, 2122
Cfr10I	RCCGGY	1 cut(s)	867
Cfr13I	GGNCC	7 cut(s)	283, 424, 489, 988, 1018, 2182, 2257
Cfr9I	CCCGGG	1 cut(s)	1497
ClaI	ATCGAT	1 cut(s)	1357
CseI	GACGC	8 cut(s)	107, 256, 401, 772, 848, 1025, 1231, 1982
CsiI	ACCWGGT	1 cut(s)	279
Csp6I	GTAC	5 cut(s)	31, 1524, 1870, 1888, 1924
CviAII	CATG	8 cut(s)	73, 1001, 1156, 1322, 1867, 2035, 2069, 2273
CviQI	GTAC	5 cut(s)	31, 1524, 1870, 1888, 1924
DdeI	CTNAG	7 cut(s)	666, 740, 788, 1313, 2082, 2111, 2171
DrdI	GACNNNNNNGTC	1 cut(s)	2230
DriI	GACNNNNNGTC	2 cut(s)	1859, 2077
DseDI	GACNNNNNNGTC	1 cut(s)	2230
EaeI	YGGCCR	3 cut(s)	603, 1806, 2002
EagI	CGGCCG	1 cut(s)	2002
Eam1104I	CTCTTC	1 cut(s)	2154
Eam1105I	GACNNNNNGTC	2 cut(s)	1859, 2077
EarI	CTCTTC	1 cut(s)	2154
EciI	GGCGGA	1 cut(s)	320
Ecl136II	GAGCTC	1 cut(s)	259
EclXI	CGGCCG	1 cut(s)	2002
Eco130I	CCWWGG	1 cut(s)	2260
Eco24I	GRGCYC	4 cut(s)	261, 327, 778, 1397
Eco31I	GGTCTC	2 cut(s)	1712, 1928
Eco47I	GGWCC	4 cut(s)	283, 424, 988, 1018
Eco52I	CGGCCG	1 cut(s)	2002
Eco53kI	GAGCTC	1 cut(s)	259
Eco57I	CTGAAG	3 cut(s)	908, 974, 1845
Eco88I	CYCGRG	1 cut(s)	1497
EcoICRI	GAGCTC	1 cut(s)	259
EcoNI	CCTNNNNNAGG	1 cut(s)	2234
EcoRII	CCWGG	6 cut(s)	93, 117, 279, 1808, 2089, 2235
EcoT14I	CCWWGG	1 cut(s)	2260
EcoT22I	ATGCAT	1 cut(s)	1478
EcoT38I	GRGCYC	4 cut(s)	261, 327, 778, 1397
ErhI	CCWWGG	1 cut(s)	2260
FaeI	CATG	8 cut(s)	76, 1004, 1159, 1325, 1870, 2038, 2072, 2276
FalI	AAGNNNNNCTT	2 cut(s)	1023, 1055
FaqI	GGGAC	1 cut(s)	2218
FatI	CATG	8 cut(s)	72, 1000, 1155, 1321, 1866, 2034, 2068, 2272
FauI	CCCGC	1 cut(s)	230
FauNDI	CATATG	3 cut(s)	1237, 1478, 2191
FbaI	TGATCA	1 cut(s)	1507
FblI	GTMKAC	1 cut(s)	1144
FokI	GGATG	5 cut(s)	926, 1184, 2106, 2129, 2266
FriOI	GRGCYC	4 cut(s)	261, 327, 778, 1397
FspAI	RTGCGCAY	1 cut(s)	2121
FspBI	CTAG	2 cut(s)	330, 1550
FspI	TGCGCA	1 cut(s)	2121
GlaI	GCGC	5 cut(s)	91, 102, 430, 738, 2121
GsaI	CCCAGC	3 cut(s)	424, 657, 2188
GsuI	CTGGAG	1 cut(s)	1604
HaeII	RGCGCY	1 cut(s)	740
HaeIII	GGCC	9 cut(s)	108, 491, 557, 605, 833, 1808, 2004, 2183, 2259
HapII	CCGG	8 cut(s)	56, 138, 492, 868, 969, 1498, 2005, 2014
HgaI	GACGC	8 cut(s)	107, 256, 401, 772, 848, 1025, 1231, 1982
HhaI	GCGC	5 cut(s)	92, 103, 431, 739, 2122
Hin1I	GRCGYC	3 cut(s)	21, 393, 1036
Hin1II	CATG	8 cut(s)	76, 1004, 1159, 1325, 1870, 2038, 2072, 2276
Hin6I	GCGC	5 cut(s)	90, 101, 429, 737, 2120
HinP1I	GCGC	5 cut(s)	90, 101, 429, 737, 2120
HincII	GTYRAC	2 cut(s)	352, 1084
HindII	GTYRAC	2 cut(s)	352, 1084
HindIII	AAGCTT	2 cut(s)	1447, 1767
HinfI	GANTC	6 cut(s)	376, 383, 683, 784, 1441, 2265
HpaI	GTTAAC	2 cut(s)	352, 1084
HpaII	CCGG	8 cut(s)	56, 138, 492, 868, 969, 1498, 2005, 2014
HphI	GGTGA	3 cut(s)	16, 160, 1486
Hpy166II	GTNNAC	9 cut(s)	31, 232, 352, 391, 523, 1084, 1145, 1657, 1890
Hpy188I	TCNGA	6 cut(s)	296, 927, 954, 1944, 2112, 2174
Hpy8I	GTNNAC	9 cut(s)	31, 232, 352, 391, 523, 1084, 1145, 1657, 1890
Hpy99I	CGWCG	3 cut(s)	23, 133, 1225
HpyCH4III	ACNGT	6 cut(s)	28, 179, 229, 1649, 1661, 1874
HpyCH4IV	ACGT	3 cut(s)	21, 1053, 1892
HpyCH4V	TGCA	9 cut(s)	219, 532, 676, 799, 1000, 1309, 1476, 1696, 1913
HpyF3I	CTNAG	7 cut(s)	666, 740, 788, 1313, 2082, 2111, 2171
HpySE526I	ACGT	3 cut(s)	21, 1053, 1892
Hsp92I	GRCGYC	3 cut(s)	21, 393, 1036
Hsp92II	CATG	8 cut(s)	76, 1004, 1159, 1325, 1870, 2038, 2072, 2276
HspAI	GCGC	5 cut(s)	90, 101, 429, 737, 2120
Ksp22I	TGATCA	1 cut(s)	1507
KspAI	GTTAAC	2 cut(s)	352, 1084
LguI	GCTCTTC	1 cut(s)	2154
LmnI	GCTCC	3 cut(s)	58, 270, 1063
Lsp1109I	GCAGC	9 cut(s)	811, 1321, 1563, 1566, 1708, 1975, 2073, 2220, 2223
LweI	GCATC	5 cut(s)	298, 786, 904, 1315, 2107
MabI	ACCWGGT	1 cut(s)	279
MaeI	CTAG	2 cut(s)	330, 1550
MaeII	ACGT	3 cut(s)	21, 1053, 1892
MaeIII	GTNAC	2 cut(s)	22, 1458
MboII	GAAGA	7 cut(s)	256, 858, 1023, 1409, 1786, 2141, 2233
MflI	RGATCY	2 cut(s)	309, 2097
MhlI	GDGCHC	8 cut(s)	137, 261, 327, 572, 778, 969, 1397, 2138
MlsI	TGGCCA	1 cut(s)	1808
MluCI	AATT	8 cut(s)	407, 1089, 1107, 1170, 1260, 1423, 1529, 1564
MluNI	TGGCCA	1 cut(s)	1808
MlyI	GAGTC	3 cut(s)	377, 692, 1450
MmeI	TCCRAC	1 cut(s)	1643
Mox20I	TGGCCA	1 cut(s)	1808
Mph1103I	ATGCAT	1 cut(s)	1478
MscI	TGGCCA	1 cut(s)	1808
MseI	TTAA	6 cut(s)	351, 1083, 1092, 1428, 1682, 1895
MslI	CAYNNNNRTG	1 cut(s)	2141
Msp20I	TGGCCA	1 cut(s)	1808
MspA1I	CMGCKG	2 cut(s)	420, 2214
MspI	CCGG	8 cut(s)	56, 138, 492, 868, 969, 1498, 2005, 2014
Mva1269I	GAATGC	2 cut(s)	1287, 1478
MvaI	CCWGG	6 cut(s)	95, 119, 281, 1810, 2091, 2237
MvnI	CGCG	7 cut(s)	90, 101, 103, 381, 429, 437, 2048
NciI	CCSGG	6 cut(s)	56, 493, 969, 1498, 1499, 2006
NdeI	CATATG	3 cut(s)	1237, 1478, 2191
NlaIII	CATG	8 cut(s)	76, 1004, 1159, 1325, 1870, 2038, 2072, 2276
NlaIV	GGNNCC	6 cut(s)	136, 425, 446, 569, 1387, 2099
NmeAIII	GCCGAG	3 cut(s)	280, 397, 483
NmuCI	GTSAC	2 cut(s)	22, 1458
NruI	TCGCGA	1 cut(s)	381
NsbI	TGCGCA	1 cut(s)	2121
NsiI	ATGCAT	1 cut(s)	1478
NspI	RCATGY	2 cut(s)	76, 1004
PagI	TCATGA	4 cut(s)	1155, 1321, 2068, 2272
PciSI	GCTCTTC	1 cut(s)	2154
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PctI	GAATGC	2 cut(s)	1287, 1478
PfeI	GAWTC	3 cut(s)	376, 784, 2265
PflFI	GACNNNGTC	1 cut(s)	20
PflMI	CCANNNNNTGG	2 cut(s)	238, 1729
PfoI	TCCNGGA	1 cut(s)	117
Ple19I	CGATCG	2 cut(s)	441, 1843
PleI	GAGTC	3 cut(s)	377, 691, 1449
PpsI	GAGTC	3 cut(s)	377, 691, 1449
PshBI	ATTAAT	1 cut(s)	1092
Psp124BI	GAGCTC	1 cut(s)	261
Psp1406I	AACGTT	1 cut(s)	1053
Psp6I	CCWGG	6 cut(s)	93, 117, 279, 1808, 2089, 2235
PspFI	CCCAGC	3 cut(s)	420, 653, 2184
PspGI	CCWGG	6 cut(s)	93, 117, 279, 1808, 2089, 2235
PspN4I	GGNNCC	6 cut(s)	136, 425, 446, 569, 1387, 2099
PspPI	GGNCC	7 cut(s)	283, 424, 489, 988, 1018, 2182, 2257
PsuI	RGATCY	2 cut(s)	309, 2097
PsyI	GACNNNGTC	1 cut(s)	20
PvuI	CGATCG	2 cut(s)	441, 1843
PvuII	CAGCTG	1 cut(s)	420
RruI	TCGCGA	1 cut(s)	381
RsaI	GTAC	5 cut(s)	32, 1525, 1871, 1889, 1925
RsaNI	GTAC	5 cut(s)	31, 1524, 1870, 1888, 1924
RseI	CAYNNNNRTG	1 cut(s)	2141
SacI	GAGCTC	1 cut(s)	261
SapI	GCTCTTC	1 cut(s)	2154
SaqAI	TTAA	6 cut(s)	351, 1083, 1092, 1428, 1682, 1895
Sau96I	GGNCC	7 cut(s)	283, 424, 489, 988, 1018, 2182, 2257
ScaI	AGTACT	1 cut(s)	1925
SchI	GAGTC	3 cut(s)	377, 692, 1450
SduI	GDGCHC	8 cut(s)	137, 261, 327, 572, 778, 969, 1397, 2138
SexAI	ACCWGGT	1 cut(s)	279
SfaNI	GCATC	5 cut(s)	298, 786, 904, 1315, 2107
SfcI	CTRYAG	1 cut(s)	175
SinI	GGWCC	4 cut(s)	283, 424, 988, 1018
SmaI	CCCGGG	1 cut(s)	1499
SmiMI	CAYNNNNRTG	1 cut(s)	2141
SmlI	CTYRAG	7 cut(s)	260, 767, 1124, 1390, 1919, 1927, 2131
SmoI	CTYRAG	7 cut(s)	260, 767, 1124, 1390, 1919, 1927, 2131
Sse9I	AATT	8 cut(s)	407, 1089, 1107, 1170, 1260, 1423, 1529, 1564
SspI	AATATT	2 cut(s)	976, 1680
SspMI	CTAG	2 cut(s)	330, 1550
SstI	GAGCTC	1 cut(s)	261
StyI	CCWWGG	1 cut(s)	2260
TaaI	ACNGT	6 cut(s)	28, 179, 229, 1649, 1661, 1874
TaiI	ACGT	3 cut(s)	24, 1056, 1895
TaqI	TCGA	8 cut(s)	597, 699, 732, 778, 1029, 1357, 1444, 1839
TasI	AATT	8 cut(s)	407, 1089, 1107, 1170, 1260, 1423, 1529, 1564
TatI	WGTACW	4 cut(s)	30, 1523, 1887, 1923
TauI	GCSGC	7 cut(s)	371, 398, 405, 434, 437, 605, 2217
TfiI	GAWTC	3 cut(s)	376, 784, 2265
Tru1I	TTAA	6 cut(s)	351, 1083, 1092, 1428, 1682, 1895
Tru9I	TTAA	6 cut(s)	351, 1083, 1092, 1428, 1682, 1895
TscAI	CASTG	2 cut(s)	116, 2143
TseFI	GTSAC	2 cut(s)	22, 1458
TseI	GCWGC	9 cut(s)	799, 1309, 1576, 1579, 1696, 1988, 2086, 2208, 2211
Tsp45I	GTSAC	2 cut(s)	22, 1458
TspDTI	ATGAA	5 cut(s)	17, 1683, 1702, 2141, 2289
TspGWI	ACGGA	2 cut(s)	376, 926
TspMI	CCCGGG	1 cut(s)	1497
TspRI	CASTG	2 cut(s)	116, 2143
Tth111I	GACNNNGTC	1 cut(s)	20
Van91I	CCANNNNNTGG	2 cut(s)	238, 1729
VpaK11BI	GGWCC	4 cut(s)	283, 424, 988, 1018
VspI	ATTAAT	1 cut(s)	1092
XagI	CCTNNNNNAGG	1 cut(s)	2234
XapI	RAATTY	1 cut(s)	1529
XceI	RCATGY	2 cut(s)	76, 1004
XmaI	CCCGGG	1 cut(s)	1497
XmiI	GTMKAC	1 cut(s)	1144
XspI	CTAG	2 cut(s)	330, 1550
ZraI	GACGTC	1 cut(s)	22
ZrmI	AGTACT	1 cut(s)	1925
Zsp2I	ATGCAT	1 cut(s)	1478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.