Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017446

Physical Location & Seq

Genomic Coordinates Reverse (-)

60793123 .. 60793767

Gene Structure 645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGTAACATCCCTCCTCTACCTTCTTCTCCGTGAAATGAAAATGAATGTTAGGGAGGTACATTCTAGAAAGCCTCAACTATATCGAACTCGTATCTCTGAGGAATTCAAGGAATCAAAGCAATTGATTCTTGTTACCTCTGATGTATCAGCACGTGGAATGAACTATTCTGATGTTACATTGGTCATTCAGGTGGTGTTCTATTTATATTCAAAGGTTCCTGAATTGATGTTTTACTGTGTGCAAGAAGGATATAGTGGACCAACATTAAATGTTCTAACTAGATTAAGTGTGAGGTGGTTCAAATCATCTTATTGGAACTACAGAGCATTCCAAGGCACACCTTTTTGTTGTGTAGCATCTATATTGTATAAAAAGCTGTCTTTATGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

131

Amino Acids

15.46

Weight (kDa)

9.43

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	8 - 65	1.7e-09	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017446)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0299761
rosa_roxburghii	Rroxscaffold_1G00029190
rosa_samantha	Rh1CG186800 Rh2AG392000 Rh2BG097000 Rh2CG099100 Rh2CG378800 Rh2DG096500 Rh4CG209500 Rh5AG382700 Rh6DG310100 Rh7AG468000 Rh7CG085900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	104
AcvI	CACGTG	1 cut(s)	155
AfaI	GTAC	1 cut(s)	60
AgsI	TTSAA	3 cut(s)	109, 213, 304
AluBI	AGCT	1 cut(s)	379
AluI	AGCT	1 cut(s)	379
ApoI	RAATTY	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	260
BbrPI	CACGTG	1 cut(s)	155
BfaI	CTAG	2 cut(s)	66, 282
BfmI	CTRYAG	1 cut(s)	322
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	219
BmsI	GCATC	1 cut(s)	368
BsaAI	YACGTR	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	334
BseDI	CCNNGG	1 cut(s)	334
BseGI	GGATG	1 cut(s)	8
BseMII	CTCAG	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	5
BsmI	GAATGC	1 cut(s)	329
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	219
BssECI	CCNNGG	1 cut(s)	334
BssT1I	CCWWGG	1 cut(s)	334
Bst4CI	ACNGT	1 cut(s)	239
BstBAI	YACGTR	1 cut(s)	155
BstDEI	CTNAG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	8
BstSFI	CTRYAG	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	59
CviJI	RGCY	2 cut(s)	73, 379
CviKI_1	RGCY	2 cut(s)	73, 379
CviQI	GTAC	1 cut(s)	59
DdeI	CTNAG	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	260
Eco72I	CACGTG	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	334
FaiI	YATR	6 cut(s)	82, 208, 255, 365, 372, 388
FspBI	CTAG	2 cut(s)	66, 282
HinfI	GANTC	2 cut(s)	113, 127
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	3 cut(s)	100, 142, 172
Hpy188III	TCNNGA	2 cut(s)	66, 221
Hpy8I	GTNNAC	1 cut(s)	260
HpyAV	CCTTC	2 cut(s)	32, 242
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	1 cut(s)	244
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	154
LpnPI	CCDG	2 cut(s)	176, 234
LweI	GCATC	1 cut(s)	368
MaeI	CTAG	2 cut(s)	66, 282
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	3 cut(s)	4, 133, 175
MboII	GAAGA	1 cut(s)	17
MfeI	CAATTG	1 cut(s)	122
MluCI	AATT	3 cut(s)	104, 122, 224
MnlI	CCTC	7 cut(s)	23, 26, 49, 84, 94, 148, 288
MseI	TTAA	2 cut(s)	269, 287
MslI	CAYNNNNRTG	1 cut(s)	191
MunI	CAATTG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	329
NlaIV	GGNNCC	1 cut(s)	219
PctI	GAATGC	1 cut(s)	329
PfeI	GAWTC	2 cut(s)	113, 127
PmaCI	CACGTG	1 cut(s)	155
PmlI	CACGTG	1 cut(s)	155
Ppu21I	YACGTR	1 cut(s)	155
PspCI	CACGTG	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	260
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
RseI	CAYNNNNRTG	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	269, 287
Sau96I	GGNCC	1 cut(s)	260
SetI	ASST	9 cut(s)	24, 60, 140, 157, 195, 219, 299, 346, 381
SfaNI	GCATC	1 cut(s)	368
SfcI	CTRYAG	1 cut(s)	322
SinI	GGWCC	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	191
Sse9I	AATT	3 cut(s)	104, 122, 224
SspMI	CTAG	2 cut(s)	66, 282
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	85
TasI	AATT	3 cut(s)	104, 122, 224
TfiI	GAWTC	2 cut(s)	113, 127
Tru1I	TTAA	2 cut(s)	269, 287
Tru9I	TTAA	2 cut(s)	269, 287
TspDTI	ATGAA	3 cut(s)	53, 59, 176
TspGWI	ACGGA	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	1 cut(s)	104
XbaI	TCTAGA	1 cut(s)	65
XspI	CTAG	2 cut(s)	66, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.