Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0017446

Physical Location & Seq

Genomic Coordinates Forward (+)

6463211 .. 6465010

Gene Structure 1800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG085900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGACCATGGCCTTCGTCCCAGACAGAGGGAGTTCTTCATTGGCTTCACAAAGGGCCAGGTTATTGTTTTCTGTACAACTGGAATGGTAACATCCCTCCTCTACCTTCTTCTCCGTGAAATGAAAATGAATGTTAGGGAGGTACATTCTAGAAAGCCTCAACTGTATCGAACTCGTATCTCTGAGGAATTCAAGGAATCAAAGCAATTGATTCTTGTTACCTCTGATGTATCAGCACGTGGAATGAACTATTCTGATGTTACATTGGTCATTCAGGATGTGACACAAGCTCAATGTCTTGTCACAGAAAGTGACTTTAGGGGTAAAGATTTTCAAAGGCAGCTGAAAGAAACCGTCGATCACTTGCTGTCTTTAAAGACTATACCTATATTCAATGAAAATGATGCAGTTAGTACCAGAACAGATTTATGTGAGGATTCTTCTGGTATATTTTGGGACAATGACAGTTTGGCAGCTATACTAGCTAAGGAGCTAAAGGCTGATCTTCTTATCCTTATGAGTGATGTGGAGGGTCTCTACAGTGGGCCTCCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

185

Amino Acids

21.1

Weight (kDa)

5.67

Isoelectric Point (pI)

27.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	18 - 92	5.4e-12	Helicase conserved C-terminal domain
AA_kinase	PF00696	22 - 185	2.7e-15	Amino acid kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017446)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0299761
rosa_roxburghii	Rroxscaffold_1G00029190
rosa_samantha	Rh1CG186800 Rh2AG392000 Rh2BG097000 Rh2CG099100 Rh2CG378800 Rh2DG096500 Rh4CG209500 Rh5AG382700 Rh6DG310100 Rh7AG468000 Rh7CG085900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	188
AcvI	CACGTG	1 cut(s)	239
AfaI	GTAC	3 cut(s)	76, 144, 415
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	3 cut(s)	193, 335, 394
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	5 cut(s)	290, 343, 476, 485, 493
AluI	AGCT	5 cut(s)	290, 343, 476, 485, 493
Alw26I	GTCTC	1 cut(s)	539
AoxI	GGCC	3 cut(s)	10, 55, 545
ApeKI	GCWGC	2 cut(s)	340, 473
ApoI	RAATTY	1 cut(s)	188
AspS9I	GGNCC	3 cut(s)	4, 55, 545
AvaII	GGWCC	1 cut(s)	4
BbrPI	CACGTG	1 cut(s)	239
BbvI	GCAGC	2 cut(s)	352, 485
BciT130I	CCWGG	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	539
BfaI	CTAG	2 cut(s)	150, 482
BfmI	CTRYAG	1 cut(s)	538
BisI	GCNGC	2 cut(s)	341, 474
BlsI	GCNGC	2 cut(s)	342, 475
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	3 cut(s)	4, 55, 545
BmrFI	CCNGG	1 cut(s)	59
BmsI	GCATC	1 cut(s)	394
Bpu10I	CCTNAGC	1 cut(s)	486
BsaAI	YACGTR	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	539
BsaJI	CCNNGG	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	7
BseGI	GGATG	2 cut(s)	92, 283
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	2 cut(s)	352, 485
BshFI	GGCC	3 cut(s)	12, 57, 547
BslFI	GGGAC	2 cut(s)	3, 470
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	539
BsmFI	GGGAC	2 cut(s)	3, 470
BsnI	GGCC	3 cut(s)	12, 57, 547
Bso31I	GGTCTC	1 cut(s)	539
Bsp1407I	TGTACA	1 cut(s)	74
Bsp143I	GATC	2 cut(s)	358, 502
Bsp19I	CCATGG	1 cut(s)	7
BspANI	GGCC	3 cut(s)	12, 57, 547
BspCNI	CTCAG	1 cut(s)	175
BspTNI	GGTCTC	1 cut(s)	539
BsrGI	TGTACA	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	7
BssMI	GATC	2 cut(s)	358, 502
BssT1I	CCWWGG	1 cut(s)	7
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	4 cut(s)	165, 355, 467, 542
BstAUI	TGTACA	1 cut(s)	74
BstBAI	YACGTR	1 cut(s)	239
BstDEI	CTNAG	2 cut(s)	183, 486
BstDSI	CCRYGG	1 cut(s)	7
BstF5I	GGATG	2 cut(s)	92, 283
BstKTI	GATC	2 cut(s)	361, 505
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	2 cut(s)	358, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	57
BstSFI	CTRYAG	1 cut(s)	538
BstV1I	GCAGC	2 cut(s)	352, 485
BsuRI	GGCC	3 cut(s)	12, 57, 547
BtgI	CCRYGG	1 cut(s)	7
BtsCI	GGATG	2 cut(s)	92, 283
BtsIMutI	CAGTG	1 cut(s)	547
Cfr13I	GGNCC	3 cut(s)	4, 55, 545
Csp6I	GTAC	3 cut(s)	75, 143, 414
CviAII	CATG	1 cut(s)	8
CviQI	GTAC	3 cut(s)	75, 143, 414
DdeI	CTNAG	2 cut(s)	183, 486
DpnI	GATC	2 cut(s)	360, 504
DpnII	GATC	2 cut(s)	358, 502
DraI	TTTAAA	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	7
Eco31I	GGTCTC	1 cut(s)	539
Eco47I	GGWCC	1 cut(s)	4
Eco72I	CACGTG	1 cut(s)	239
EcoRI	GAATTC	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	7
ErhI	CCWWGG	1 cut(s)	7
FaeI	CATG	1 cut(s)	11
FaiI	YATR	7 cut(s)	9, 383, 389, 430, 449, 479, 518
FaqI	GGGAC	2 cut(s)	3, 470
FatI	CATG	1 cut(s)	7
Fnu4HI	GCNGC	2 cut(s)	341, 474
FokI	GGATG	2 cut(s)	79, 290
Fsp4HI	GCNGC	2 cut(s)	341, 474
FspBI	CTAG	2 cut(s)	150, 482
GluI	GCNGC	2 cut(s)	341, 474
HaeIII	GGCC	3 cut(s)	12, 57, 547
Hin1II	CATG	1 cut(s)	11
HinfI	GANTC	3 cut(s)	197, 211, 437
Hpy188I	TCNGA	3 cut(s)	184, 226, 256
Hpy188III	TCNNGA	2 cut(s)	150, 275
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	2 cut(s)	23, 116
HpyCH4III	ACNGT	4 cut(s)	165, 355, 467, 542
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	1 cut(s)	407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	2 cut(s)	183, 486
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	1 cut(s)	11
Kzo9I	GATC	2 cut(s)	358, 502
LmnI	GCTCC	1 cut(s)	490
LpnPI	CCDG	7 cut(s)	34, 44, 66, 71, 260, 429, 430
Lsp1109I	GCAGC	2 cut(s)	352, 485
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	2 cut(s)	150, 482
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	6 cut(s)	88, 217, 259, 280, 301, 311
MalI	GATC	2 cut(s)	360, 504
MboI	GATC	2 cut(s)	358, 502
MboII	GAAGA	4 cut(s)	28, 101, 432, 497
MfeI	CAATTG	1 cut(s)	206
MluCI	AATT	2 cut(s)	188, 206
MseI	TTAA	1 cut(s)	374
MspA1I	CMGCKG	1 cut(s)	343
MspR9I	CCNGG	1 cut(s)	59
MunI	CAATTG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	482
NcoI	CCATGG	1 cut(s)	7
NdeII	GATC	2 cut(s)	358, 502
NlaIII	CATG	1 cut(s)	11
NmuCI	GTSAC	3 cut(s)	280, 301, 311
PfeI	GAWTC	3 cut(s)	197, 211, 437
PkrI	GCNGC	2 cut(s)	342, 475
PmaCI	CACGTG	1 cut(s)	239
PmlI	CACGTG	1 cut(s)	239
Ppu21I	YACGTR	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	57
PspCI	CACGTG	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	57
PspPI	GGNCC	3 cut(s)	4, 55, 545
PvuII	CAGCTG	1 cut(s)	343
RsaI	GTAC	3 cut(s)	76, 144, 415
RsaNI	GTAC	3 cut(s)	75, 143, 414
SaqAI	TTAA	1 cut(s)	374
SatI	GCNGC	2 cut(s)	341, 474
Sau3AI	GATC	2 cut(s)	358, 502
Sau96I	GGNCC	3 cut(s)	4, 55, 545
ScrFI	CCNGG	1 cut(s)	59
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	1 cut(s)	538
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	2 cut(s)	188, 206
SspMI	CTAG	2 cut(s)	150, 482
StyD4I	CCNGG	1 cut(s)	57
StyI	CCWWGG	1 cut(s)	7
TaaI	ACNGT	4 cut(s)	165, 355, 467, 542
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	2 cut(s)	169, 357
TasI	AATT	2 cut(s)	188, 206
TatI	WGTACW	1 cut(s)	74
TfiI	GAWTC	3 cut(s)	197, 211, 437
Tru1I	TTAA	1 cut(s)	374
Tru9I	TTAA	1 cut(s)	374
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	3 cut(s)	280, 301, 311
TseI	GCWGC	2 cut(s)	340, 473
Tsp45I	GTSAC	3 cut(s)	280, 301, 311
TspDTI	ATGAA	5 cut(s)	28, 137, 143, 260, 411
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	1 cut(s)	547
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	188
XbaI	TCTAGA	1 cut(s)	149
XspI	CTAG	2 cut(s)	150, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.