Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0017446

Physical Location & Seq

Genomic Coordinates Forward (+)

40789752 .. 40790305

Gene Structure 554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG186800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAATGTTAGGGAGATACATTCTAGAAAGCCTCAACTGTATCGAACTCGTATCTCTGAGGAATTGAAGGAATCAAAGCAAGTAATTCTTGTTACCTCTGATGTATCAGCACGGTATGTTGGTGATAAAGAATATAGGTGTAGCTTACGCAGGACAATATATGAGCATGTGAAAGTGCATTCCTCAGTATCTGATGTAAGAATGCTATTTGAGAAATGGGCTATGAACGTGTTGTCATTACCTTTCGATGTCCTATTGACAACATATGACATCGCGTTGGCCGATCAGGATTTCCTTTCTCAAATACCATGGAACTATGCAGTTATTGATGAAGCGCAAAGGCTTAAAAACCCTTCCAGTGTATGTCTAAAATGTCATGTATTCTCTCGTACAATTATTAATGGAAAAATGTGCAATGGGAAACTTTTTTCCTTATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0031334 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0036094 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070035 GO:0070911 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

146

Amino Acids

16.99

Weight (kDa)

9.1

Isoelectric Point (pI)

33.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	61 - 124	3.6e-09	SNF2-related domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0017446)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0299761
rosa_roxburghii	Rroxscaffold_1G00029190
rosa_samantha	Rh1CG186800 Rh2AG392000 Rh2BG097000 Rh2CG099100 Rh2CG378800 Rh2DG096500 Rh4CG209500 Rh5AG382700 Rh6DG310100 Rh7AG468000 Rh7CG085900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	275
AcoI	YGGCCR	1 cut(s)	279
AfaI	GTAC	1 cut(s)	391
AflIII	ACRYGT	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	67
AluBI	AGCT	1 cut(s)	144
AluI	AGCT	1 cut(s)	144
AlwNI	CAGNNNCTG	1 cut(s)	191
AoxI	GGCC	1 cut(s)	279
AseI	ATTAAT	1 cut(s)	399
AspLEI	GCGC	1 cut(s)	337
AsuHPI	GGTGA	1 cut(s)	134
BfaI	CTAG	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	421
BseDI	CCNNGG	1 cut(s)	308
BseMI	GCAATG	1 cut(s)	421
BseMII	CTCAG	2 cut(s)	48, 198
BseNI	ACTGG	1 cut(s)	357
Bsh1236I	CGCG	1 cut(s)	275
BshFI	GGCC	1 cut(s)	281
BsmI	GAATGC	2 cut(s)	178, 207
BsnI	GGCC	1 cut(s)	281
Bsp143I	GATC	1 cut(s)	283
Bsp19I	CCATGG	1 cut(s)	308
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	2 cut(s)	49, 197
BspFNI	CGCG	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	308
BssMI	GATC	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	39, 114
BstDEI	CTNAG	2 cut(s)	57, 184
BstDSI	CCRYGG	1 cut(s)	308
BstFNI	CGCG	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	337
BstKTI	GATC	1 cut(s)	286
BstMBI	GATC	1 cut(s)	283
BstNSI	RCATGY	1 cut(s)	170
BstUI	CGCG	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	281
BtgI	CCRYGG	1 cut(s)	308
BtgZI	GCGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	364
CaiI	CAGNNNCTG	1 cut(s)	191
CfoI	GCGC	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	390
CviAII	CATG	3 cut(s)	167, 309, 377
CviJI	RGCY	5 cut(s)	31, 144, 221, 281, 343
CviKI_1	RGCY	5 cut(s)	31, 144, 221, 281, 343
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	2 cut(s)	57, 184
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
EaeI	YGGCCR	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	308
ErhI	CCWWGG	1 cut(s)	308
FaeI	CATG	3 cut(s)	170, 312, 380
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FatI	CATG	3 cut(s)	166, 308, 376
FauNDI	CATATG	1 cut(s)	265
FspBI	CTAG	1 cut(s)	24
GlaI	GCGC	1 cut(s)	336
HaeIII	GGCC	1 cut(s)	281
HhaI	GCGC	1 cut(s)	337
Hin1II	CATG	3 cut(s)	170, 312, 380
Hin6I	GCGC	1 cut(s)	335
HinP1I	GCGC	1 cut(s)	335
HinfI	GANTC	1 cut(s)	71
HphI	GGTGA	1 cut(s)	134
Hpy188I	TCNGA	3 cut(s)	58, 100, 193
Hpy188III	TCNNGA	2 cut(s)	24, 287
HpyAV	CCTTC	2 cut(s)	61, 363
HpyCH4III	ACNGT	2 cut(s)	39, 114
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	3 cut(s)	178, 320, 414
HpyF3I	CTNAG	2 cut(s)	57, 184
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	3 cut(s)	170, 312, 380
HspAI	GCGC	1 cut(s)	335
Kzo9I	GATC	1 cut(s)	283
LpnPI	CCDG	3 cut(s)	136, 272, 370
MaeI	CTAG	1 cut(s)	24
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MluCI	AATT	3 cut(s)	62, 84, 393
MnlI	CCTC	4 cut(s)	42, 52, 106, 193
MseI	TTAA	2 cut(s)	345, 399
Mva1269I	GAATGC	2 cut(s)	178, 207
MvnI	CGCG	1 cut(s)	275
NcoI	CCATGG	1 cut(s)	308
NdeI	CATATG	1 cut(s)	265
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	3 cut(s)	170, 312, 380
NspI	RCATGY	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PctI	GAATGC	2 cut(s)	178, 207
PfeI	GAWTC	1 cut(s)	71
PshBI	ATTAAT	1 cut(s)	399
PstNI	CAGNNNCTG	1 cut(s)	191
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
SaqAI	TTAA	2 cut(s)	345, 399
Sau3AI	GATC	1 cut(s)	283
SetI	ASST	5 cut(s)	98, 140, 146, 231, 244
Sse9I	AATT	3 cut(s)	62, 84, 393
SspMI	CTAG	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	2 cut(s)	39, 114
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	2 cut(s)	43, 246
TasI	AATT	3 cut(s)	62, 84, 393
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	2 cut(s)	345, 399
Tru9I	TTAA	2 cut(s)	345, 399
TscAI	CASTG	1 cut(s)	364
TspDTI	ATGAA	3 cut(s)	17, 239, 345
TspRI	CASTG	1 cut(s)	364
VspI	ATTAAT	1 cut(s)	399
XbaI	TCTAGA	1 cut(s)	23
XceI	RCATGY	1 cut(s)	170
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.