Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0017446

Physical Location & Seq

Genomic Coordinates Reverse (-)

43865456 .. 43867284

Gene Structure 1829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG209500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGTAACATCCCTCCTCTACCTTCTTCTCCATGAAATGAAAATGAATGTTAGGGAGATACATTCTAGAAAGCCTCAACTGTATCGAACTCGTATCTCTGAGGAATTGAAGGAATCAAAGCAAGTAATTCTTGTTACCTCTGATGTATCAGCACGGTATGTTGGTGATAAAGAATATAGGTGCAGCTTACGCAGGACAATATATGAGCATGTGAAAGTGCATTCCTCAGTATCTGATGTGTTGTCGTTACCTTTCGATGTCCTGTTGACAACATATGACATCGCGTTGGCCGATCAGGATTTCCTTTCTCAAATACCATGGAACTATGCAGTAATTGATGAAGCGCAAAGGCTTAAAAACCCTTCCAGTGTATGTCTAAAATGTCATGTATTCTCTCGTACAATTATTAATGGAAAAATGTGCAATGGGAAACTTTTTTCCTTATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0031334 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0036094 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070035 GO:0070911 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

149

Amino Acids

17.25

Weight (kDa)

8.9

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	62 - 127	1.2e-09	SNF2-related domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017446)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0299761
rosa_roxburghii	Rroxscaffold_1G00029190
rosa_samantha	Rh1CG186800 Rh2AG392000 Rh2BG097000 Rh2CG099100 Rh2CG378800 Rh2DG096500 Rh4CG209500 Rh5AG382700 Rh6DG310100 Rh7AG468000 Rh7CG085900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	284
AcoI	YGGCCR	1 cut(s)	288
AfaI	GTAC	1 cut(s)	400
AgsI	TTSAA	1 cut(s)	109
AluBI	AGCT	1 cut(s)	186
AluI	AGCT	1 cut(s)	186
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	1 cut(s)	288
ApeKI	GCWGC	1 cut(s)	183
AseI	ATTAAT	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	346
AsuHPI	GGTGA	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	195
BfaI	CTAG	1 cut(s)	66
BisI	GCNGC	1 cut(s)	184
BlsI	GCNGC	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	317
Bse1I	ACTGG	1 cut(s)	366
Bse3DI	GCAATG	1 cut(s)	430
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	1 cut(s)	8
BseMI	GCAATG	1 cut(s)	430
BseMII	CTCAG	2 cut(s)	90, 240
BseNI	ACTGG	1 cut(s)	366
BseRI	GAGGAG	1 cut(s)	5
BseXI	GCAGC	1 cut(s)	195
BsgI	GTGCAG	1 cut(s)	202
Bsh1236I	CGCG	1 cut(s)	284
BshFI	GGCC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	290
Bsp143I	GATC	1 cut(s)	292
Bsp19I	CCATGG	1 cut(s)	317
BspANI	GGCC	1 cut(s)	290
BspCNI	CTCAG	2 cut(s)	91, 239
BspFNI	CGCG	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	430
BsrI	ACTGG	1 cut(s)	366
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	1 cut(s)	292
BssT1I	CCWWGG	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	81, 156
BstDEI	CTNAG	2 cut(s)	99, 226
BstDSI	CCRYGG	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	8
BstFNI	CGCG	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	1 cut(s)	189
BstNSI	RCATGY	1 cut(s)	212
BstUI	CGCG	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	290
BtgI	CCRYGG	1 cut(s)	317
BtgZI	GCGATG	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	8
BtsIMutI	CAGTG	1 cut(s)	373
CaiI	CAGNNNCTG	1 cut(s)	233
CfoI	GCGC	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	399
CviAII	CATG	4 cut(s)	32, 209, 318, 386
CviJI	RGCY	4 cut(s)	73, 186, 290, 352
CviKI_1	RGCY	4 cut(s)	73, 186, 290, 352
CviQI	GTAC	1 cut(s)	399
DdeI	CTNAG	2 cut(s)	99, 226
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	317
EcoT14I	CCWWGG	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	4 cut(s)	35, 212, 321, 389
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FatI	CATG	4 cut(s)	31, 208, 317, 385
FauNDI	CATATG	1 cut(s)	274
Fnu4HI	GCNGC	1 cut(s)	184
Fsp4HI	GCNGC	1 cut(s)	184
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	1 cut(s)	184
HaeIII	GGCC	1 cut(s)	290
HhaI	GCGC	1 cut(s)	346
Hin1II	CATG	4 cut(s)	35, 212, 321, 389
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HinfI	GANTC	1 cut(s)	113
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	3 cut(s)	100, 142, 235
Hpy188III	TCNNGA	2 cut(s)	66, 296
Hpy8I	GTNNAC	1 cut(s)	267
HpyAV	CCTTC	3 cut(s)	32, 103, 372
HpyCH4III	ACNGT	2 cut(s)	81, 156
HpyCH4V	TGCA	4 cut(s)	183, 220, 329, 423
HpyF10VI	GCNNNNNNNGC	1 cut(s)	189
HpyF3I	CTNAG	2 cut(s)	99, 226
Hsp92II	CATG	4 cut(s)	35, 212, 321, 389
HspAI	GCGC	1 cut(s)	344
Kzo9I	GATC	1 cut(s)	292
LpnPI	CCDG	4 cut(s)	178, 275, 281, 379
Lsp1109I	GCAGC	1 cut(s)	195
MaeI	CTAG	1 cut(s)	66
MaeIII	GTNAC	3 cut(s)	4, 133, 246
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	1 cut(s)	17
MluCI	AATT	4 cut(s)	104, 126, 333, 402
MnlI	CCTC	6 cut(s)	23, 26, 84, 94, 148, 235
MseI	TTAA	2 cut(s)	354, 408
Mva1269I	GAATGC	1 cut(s)	220
MvnI	CGCG	1 cut(s)	284
MwoI	GCNNNNNNNGC	1 cut(s)	189
NcoI	CCATGG	1 cut(s)	317
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	4 cut(s)	35, 212, 321, 389
NspI	RCATGY	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	185
PshBI	ATTAAT	1 cut(s)	408
PstNI	CAGNNNCTG	1 cut(s)	233
RsaI	GTAC	1 cut(s)	400
RsaNI	GTAC	1 cut(s)	399
SaqAI	TTAA	2 cut(s)	354, 408
SatI	GCNGC	1 cut(s)	184
Sau3AI	GATC	1 cut(s)	292
SetI	ASST	5 cut(s)	24, 140, 182, 188, 253
Sse9I	AATT	4 cut(s)	104, 126, 333, 402
SspMI	CTAG	1 cut(s)	66
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	2 cut(s)	81, 156
TaqI	TCGA	2 cut(s)	85, 255
TasI	AATT	4 cut(s)	104, 126, 333, 402
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	2 cut(s)	354, 408
Tru9I	TTAA	2 cut(s)	354, 408
TscAI	CASTG	1 cut(s)	373
TseI	GCWGC	1 cut(s)	183
TspDTI	ATGAA	4 cut(s)	48, 53, 59, 354
TspRI	CASTG	1 cut(s)	373
VspI	ATTAAT	1 cut(s)	408
XbaI	TCTAGA	1 cut(s)	65
XceI	RCATGY	1 cut(s)	212
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.