DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0299761 |
| rosa_roxburghii | Rroxscaffold_1G00029190 |
| rosa_samantha | Rh1CG186800 Rh2AG392000 Rh2BG097000 Rh2CG099100 Rh2CG378800 Rh2DG096500 Rh4CG209500 Rh5AG382700 Rh6DG310100 Rh7AG468000 Rh7CG085900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 63, 404 |
| AfaI | GTAC | 1 cut(s) | 293 |
| AgsI | TTSAA | 2 cut(s) | 68, 409 |
| AluBI | AGCT | 2 cut(s) | 144, 486 |
| AluI | AGCT | 2 cut(s) | 144, 486 |
| Ama87I | CYCGRG | 1 cut(s) | 57 |
| AoxI | GGCC | 1 cut(s) | 257 |
| ApeKI | GCWGC | 2 cut(s) | 141, 483 |
| ApoI | RAATTY | 2 cut(s) | 63, 404 |
| AseI | ATTAAT | 2 cut(s) | 84, 425 |
| AspLEI | GCGC | 2 cut(s) | 231, 573 |
| AsuHPI | GGTGA | 2 cut(s) | 134, 476 |
| AvaI | CYCGRG | 1 cut(s) | 57 |
| BbvI | GCAGC | 2 cut(s) | 153, 495 |
| BfaI | CTAG | 2 cut(s) | 24, 366 |
| BisI | GCNGC | 2 cut(s) | 142, 484 |
| BlsI | GCNGC | 2 cut(s) | 143, 485 |
| BmeT110I | CYCGRG | 1 cut(s) | 57 |
| BsaJI | CCNNGG | 1 cut(s) | 399 |
| BsaWI | WCCGGW | 1 cut(s) | 592 |
| Bse1I | ACTGG | 1 cut(s) | 251 |
| BseDI | CCNNGG | 1 cut(s) | 399 |
| BseGI | GGATG | 1 cut(s) | 308 |
| BseNI | ACTGG | 1 cut(s) | 251 |
| BseRI | GAGGAG | 1 cut(s) | 305 |
| BseXI | GCAGC | 2 cut(s) | 153, 495 |
| BsgI | GTGCAG | 2 cut(s) | 160, 502 |
| BshFI | GGCC | 1 cut(s) | 259 |
| BsiHKCI | CYCGRG | 1 cut(s) | 57 |
| BsiSI | CCGG | 1 cut(s) | 593 |
| BsmI | GAATGC | 4 cut(s) | 178, 207, 520, 549 |
| BsnI | GGCC | 1 cut(s) | 259 |
| BsoBI | CYCGRG | 1 cut(s) | 57 |
| BspANI | GGCC | 1 cut(s) | 259 |
| BsrI | ACTGG | 1 cut(s) | 251 |
| BssECI | CCNNGG | 1 cut(s) | 399 |
| Bst4CI | ACNGT | 4 cut(s) | 39, 114, 381, 456 |
| BstDEI | CTNAG | 2 cut(s) | 184, 526 |
| BstF5I | GGATG | 1 cut(s) | 308 |
| BstHHI | GCGC | 2 cut(s) | 231, 573 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 147, 489 |
| BstNSI | RCATGY | 2 cut(s) | 170, 512 |
| BstV1I | GCAGC | 2 cut(s) | 153, 495 |
| BsuRI | GGCC | 1 cut(s) | 259 |
| BtsCI | GGATG | 1 cut(s) | 308 |
| CfoI | GCGC | 2 cut(s) | 231, 573 |
| Csp6I | GTAC | 1 cut(s) | 292 |
| CviAII | CATG | 2 cut(s) | 167, 509 |
| CviJI | RGCY | 9 cut(s) | 31, 144, 221, 237, 259, 373, 486, 563, 579 |
| CviKI_1 | RGCY | 9 cut(s) | 31, 144, 221, 237, 259, 373, 486, 563, 579 |
| CviQI | GTAC | 1 cut(s) | 292 |
| DdeI | CTNAG | 2 cut(s) | 184, 526 |
| Eco147I | AGGCCT | 1 cut(s) | 259 |
| Eco88I | CYCGRG | 1 cut(s) | 57 |
| EcoRI | GAATTC | 2 cut(s) | 63, 404 |
| FaeI | CATG | 2 cut(s) | 170, 512 |
| FatI | CATG | 2 cut(s) | 166, 508 |
| Fnu4HI | GCNGC | 2 cut(s) | 142, 484 |
| FokI | GGATG | 1 cut(s) | 295 |
| Fsp4HI | GCNGC | 2 cut(s) | 142, 484 |
| FspBI | CTAG | 2 cut(s) | 24, 366 |
| GlaI | GCGC | 2 cut(s) | 230, 572 |
| GluI | GCNGC | 2 cut(s) | 142, 484 |
| HaeIII | GGCC | 1 cut(s) | 259 |
| HapII | CCGG | 1 cut(s) | 593 |
| HhaI | GCGC | 2 cut(s) | 231, 573 |
| Hin1II | CATG | 2 cut(s) | 170, 512 |
| Hin6I | GCGC | 2 cut(s) | 229, 571 |
| HinP1I | GCGC | 2 cut(s) | 229, 571 |
| HinfI | GANTC | 2 cut(s) | 72, 413 |
| HpaII | CCGG | 1 cut(s) | 593 |
| HphI | GGTGA | 2 cut(s) | 134, 476 |
| Hpy188I | TCNGA | 4 cut(s) | 193, 400, 442, 535 |
| Hpy188III | TCNNGA | 3 cut(s) | 24, 57, 366 |
| HpyAV | CCTTC | 3 cut(s) | 257, 332, 599 |
| HpyCH4III | ACNGT | 4 cut(s) | 39, 114, 381, 456 |
| HpyCH4V | TGCA | 4 cut(s) | 141, 178, 483, 520 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 147, 489 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 526 |
| Hsp92II | CATG | 2 cut(s) | 170, 512 |
| HspAI | GCGC | 2 cut(s) | 229, 571 |
| LpnPI | CCDG | 3 cut(s) | 136, 264, 478 |
| Lsp1109I | GCAGC | 2 cut(s) | 153, 495 |
| MaeI | CTAG | 2 cut(s) | 24, 366 |
| MaeIII | GTNAC | 3 cut(s) | 92, 304, 433 |
| MboII | GAAGA | 1 cut(s) | 317 |
| MluCI | AATT | 6 cut(s) | 63, 81, 85, 404, 422, 426 |
| MnlI | CCTC | 8 cut(s) | 42, 53, 107, 323, 326, 384, 394, 448 |
| MseI | TTAA | 4 cut(s) | 84, 239, 425, 581 |
| MspI | CCGG | 1 cut(s) | 593 |
| Mva1269I | GAATGC | 4 cut(s) | 178, 207, 520, 549 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 147, 489 |
| NlaIII | CATG | 2 cut(s) | 170, 512 |
| NspI | RCATGY | 2 cut(s) | 170, 512 |
| PaeR7I | CTCGAG | 1 cut(s) | 57 |
| PceI | AGGCCT | 1 cut(s) | 259 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 55 |
| PctI | GAATGC | 4 cut(s) | 178, 207, 520, 549 |
| PfeI | GAWTC | 2 cut(s) | 72, 413 |
| PkrI | GCNGC | 2 cut(s) | 143, 485 |
| PshBI | ATTAAT | 2 cut(s) | 84, 425 |
| RsaI | GTAC | 1 cut(s) | 293 |
| RsaNI | GTAC | 1 cut(s) | 292 |
| SaqAI | TTAA | 4 cut(s) | 84, 239, 425, 581 |
| SatI | GCNGC | 2 cut(s) | 142, 484 |
| SetI | ASST | 8 cut(s) | 99, 140, 146, 274, 324, 440, 482, 488 |
| Sfr274I | CTCGAG | 1 cut(s) | 57 |
| SlaI | CTCGAG | 1 cut(s) | 57 |
| SmlI | CTYRAG | 1 cut(s) | 57 |
| SmoI | CTYRAG | 1 cut(s) | 57 |
| Sse9I | AATT | 6 cut(s) | 63, 81, 85, 404, 422, 426 |
| SseBI | AGGCCT | 1 cut(s) | 259 |
| SspMI | CTAG | 2 cut(s) | 24, 366 |
| StuI | AGGCCT | 1 cut(s) | 259 |
| TaaI | ACNGT | 4 cut(s) | 39, 114, 381, 456 |
| TaqI | TCGA | 6 cut(s) | 43, 58, 75, 99, 385, 416 |
| TasI | AATT | 6 cut(s) | 63, 81, 85, 404, 422, 426 |
| TfiI | GAWTC | 2 cut(s) | 72, 413 |
| Tru1I | TTAA | 4 cut(s) | 84, 239, 425, 581 |
| Tru9I | TTAA | 4 cut(s) | 84, 239, 425, 581 |
| TseI | GCWGC | 2 cut(s) | 141, 483 |
| TspDTI | ATGAA | 5 cut(s) | 17, 239, 353, 359, 581 |
| TspGWI | ACGGA | 1 cut(s) | 320 |
| VspI | ATTAAT | 2 cut(s) | 84, 425 |
| XapI | RAATTY | 2 cut(s) | 63, 404 |
| XbaI | TCTAGA | 2 cut(s) | 23, 365 |
| XceI | RCATGY | 2 cut(s) | 170, 512 |
| XhoI | CTCGAG | 1 cut(s) | 57 |
| XspI | CTAG | 2 cut(s) | 24, 366 |