Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0017446

Physical Location & Seq

Genomic Coordinates Reverse (-)

64694947 .. 64699395

Gene Structure 4449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG468000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTAACATCCCTCCTCTACCTTCTTCTCCGTGAGATGAAAATGAATGTTAGGGAGGTACATTCTAGAAAGCCTCAACTGTATCGAACTCGTATCTCTGAGGAATTCAAGGAATCAAAGCAATTGATTCTTGTTACCTCTGATGTATCAGCACGTGGAATGAACTATTCTGATGTTACATTGGTCATTCAGGATGTGACACAAGCTCAATGTCTTGTCACAGAAAGTGACTTTACCCCTATTCAAAGGCAGCTGAAAGAAACCGTCGATCACTTGCTGTCTTTAAAGACTATACCTATATTCAATGAAAATGATGCAGTTAGTACCAGAACAGATTTATGTGAGGTATATACCACTCTTCTATACATGAATCAGAAATTGATTATGAAGCTTTGGCTAGTCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

135

Amino Acids

15.84

Weight (kDa)

6.73

Isoelectric Point (pI)

24.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	8 - 64	2.9e-09	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017446)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0299761
rosa_roxburghii	Rroxscaffold_1G00029190
rosa_samantha	Rh1CG186800 Rh2AG392000 Rh2BG097000 Rh2CG099100 Rh2CG378800 Rh2DG096500 Rh4CG209500 Rh5AG382700 Rh6DG310100 Rh7AG468000 Rh7CG085900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	104
AcvI	CACGTG	1 cut(s)	155
AfaI	GTAC	2 cut(s)	60, 325
AgsI	TTSAA	3 cut(s)	109, 245, 304
AluBI	AGCT	3 cut(s)	206, 253, 391
AluI	AGCT	3 cut(s)	206, 253, 391
ApeKI	GCWGC	1 cut(s)	250
ApoI	RAATTY	1 cut(s)	104
BbrPI	CACGTG	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	262
BfaI	CTAG	2 cut(s)	66, 398
BisI	GCNGC	1 cut(s)	251
BlsI	GCNGC	1 cut(s)	252
BmsI	GCATC	1 cut(s)	304
BsaAI	YACGTR	1 cut(s)	155
BseGI	GGATG	2 cut(s)	8, 199
BseMII	CTCAG	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	5
BseXI	GCAGC	1 cut(s)	262
Bsp143I	GATC	1 cut(s)	268
BspCNI	CTCAG	1 cut(s)	91
BssMI	GATC	1 cut(s)	268
Bst4CI	ACNGT	2 cut(s)	81, 265
Bst6I	CTCTTC	1 cut(s)	363
BstBAI	YACGTR	1 cut(s)	155
BstDEI	CTNAG	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	8, 199
BstKTI	GATC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	262
BtsCI	GGATG	2 cut(s)	8, 199
Csp6I	GTAC	2 cut(s)	59, 324
CviAII	CATG	1 cut(s)	367
CviJI	RGCY	5 cut(s)	73, 206, 253, 391, 397
CviKI_1	RGCY	5 cut(s)	73, 206, 253, 391, 397
CviQI	GTAC	2 cut(s)	59, 324
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
DraI	TTTAAA	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco72I	CACGTG	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	104
FaeI	CATG	1 cut(s)	370
FaiI	YATR	8 cut(s)	293, 299, 340, 349, 351, 364, 368, 386
FatI	CATG	1 cut(s)	366
Fnu4HI	GCNGC	1 cut(s)	251
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	1 cut(s)	251
FspBI	CTAG	2 cut(s)	66, 398
GluI	GCNGC	1 cut(s)	251
Hin1II	CATG	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	3 cut(s)	113, 127, 370
Hpy188I	TCNGA	4 cut(s)	100, 142, 172, 375
Hpy188III	TCNNGA	2 cut(s)	66, 191
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	2 cut(s)	81, 265
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	1 cut(s)	317
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	1 cut(s)	370
Kzo9I	GATC	1 cut(s)	268
LpnPI	CCDG	3 cut(s)	176, 340, 388
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	2 cut(s)	66, 398
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	6 cut(s)	4, 133, 175, 196, 217, 227
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	2 cut(s)	17, 350
MfeI	CAATTG	1 cut(s)	122
MluCI	AATT	3 cut(s)	104, 122, 377
MnlI	CCTC	7 cut(s)	23, 26, 49, 84, 94, 148, 337
MseI	TTAA	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	253
MunI	CAATTG	1 cut(s)	122
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	1 cut(s)	370
NmuCI	GTSAC	3 cut(s)	196, 217, 227
PfeI	GAWTC	3 cut(s)	113, 127, 370
PkrI	GCNGC	1 cut(s)	252
PmaCI	CACGTG	1 cut(s)	155
PmlI	CACGTG	1 cut(s)	155
Ppu21I	YACGTR	1 cut(s)	155
PspCI	CACGTG	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	253
RsaI	GTAC	2 cut(s)	60, 325
RsaNI	GTAC	2 cut(s)	59, 324
SaqAI	TTAA	1 cut(s)	284
SatI	GCNGC	1 cut(s)	251
Sau3AI	GATC	1 cut(s)	268
SetI	ASST	9 cut(s)	24, 60, 140, 157, 208, 255, 298, 348, 393
SfaNI	GCATC	1 cut(s)	304
Sse9I	AATT	3 cut(s)	104, 122, 377
SspMI	CTAG	2 cut(s)	66, 398
TaaI	ACNGT	2 cut(s)	81, 265
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	2 cut(s)	85, 267
TasI	AATT	3 cut(s)	104, 122, 377
TfiI	GAWTC	3 cut(s)	113, 127, 370
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
TseFI	GTSAC	3 cut(s)	196, 217, 227
TseI	GCWGC	1 cut(s)	250
Tsp45I	GTSAC	3 cut(s)	196, 217, 227
TspDTI	ATGAA	6 cut(s)	53, 59, 176, 321, 383, 401
TspGWI	ACGGA	1 cut(s)	20
XapI	RAATTY	1 cut(s)	104
XbaI	TCTAGA	1 cut(s)	65
XspI	CTAG	2 cut(s)	66, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.