Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0017446

Physical Location & Seq

Genomic Coordinates Forward (+)

58786512 .. 58789755

Gene Structure 3244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG392000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGTAACATCCCTCCTCTACCTTCTTCTCCATGAGATGAAAATGAATGTTAGGGAGGTGCATTCTAGAAAGCCTCAACTGTATCGAACTCGTATCTCTGAGGAATTCAAGGAATCAAAGCAATTGATTCTTGTTACCTCTGATGTATCAGCACGTGGAATGAACTATTATGTTACATTGGTCATTCAGGATGTGACACAAGCTCAATGTCTTGACACAGAAAGTGACTTTAGGGGTAAAGATTTTCAAAGGCAGCTGAAAGAAACCGTCGATCACTTGCTGTCTTTAAAGACTATACCTATATTCAATGAAAATGATGCAGTTAGTACCAGAACAGATTTATGTGAGGTATATACCACTCTTCTATACATGAATCAGAAATTGATTATGAAGCTTTGGCTAGTCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

136

Amino Acids

16.09

Weight (kDa)

6.83

Isoelectric Point (pI)

21.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	9 - 63	4e-07	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017446)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0299761
rosa_roxburghii	Rroxscaffold_1G00029190
rosa_samantha	Rh1CG186800 Rh2AG392000 Rh2BG097000 Rh2CG099100 Rh2CG378800 Rh2DG096500 Rh4CG209500 Rh5AG382700 Rh6DG310100 Rh7AG468000 Rh7CG085900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	104
AcvI	CACGTG	1 cut(s)	155
AfaI	GTAC	1 cut(s)	328
AgsI	TTSAA	3 cut(s)	109, 248, 307
AluBI	AGCT	3 cut(s)	203, 256, 394
AluI	AGCT	3 cut(s)	203, 256, 394
ApeKI	GCWGC	1 cut(s)	253
ApoI	RAATTY	1 cut(s)	104
BbrPI	CACGTG	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	265
BfaI	CTAG	2 cut(s)	66, 401
BisI	GCNGC	1 cut(s)	254
BlsI	GCNGC	1 cut(s)	255
BmsI	GCATC	1 cut(s)	307
BsaAI	YACGTR	1 cut(s)	155
BseGI	GGATG	2 cut(s)	8, 196
BseMII	CTCAG	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	5
BseXI	GCAGC	1 cut(s)	265
BsmI	GAATGC	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	271
BspCNI	CTCAG	1 cut(s)	91
BssMI	GATC	1 cut(s)	271
Bst4CI	ACNGT	2 cut(s)	81, 268
Bst6I	CTCTTC	1 cut(s)	366
BstBAI	YACGTR	1 cut(s)	155
BstDEI	CTNAG	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	8, 196
BstKTI	GATC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	8, 196
Csp6I	GTAC	1 cut(s)	327
CviAII	CATG	2 cut(s)	32, 370
CviJI	RGCY	5 cut(s)	73, 203, 256, 394, 400
CviKI_1	RGCY	5 cut(s)	73, 203, 256, 394, 400
CviQI	GTAC	1 cut(s)	327
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
DraI	TTTAAA	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco72I	CACGTG	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	104
FaeI	CATG	2 cut(s)	35, 373
FatI	CATG	2 cut(s)	31, 369
Fnu4HI	GCNGC	1 cut(s)	254
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	254
FspBI	CTAG	2 cut(s)	66, 401
GluI	GCNGC	1 cut(s)	254
Hin1II	CATG	2 cut(s)	35, 373
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	3 cut(s)	113, 127, 373
Hpy188I	TCNGA	3 cut(s)	100, 142, 378
Hpy188III	TCNNGA	3 cut(s)	66, 188, 212
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	2 cut(s)	81, 268
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	2 cut(s)	61, 320
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	2 cut(s)	35, 373
Kzo9I	GATC	1 cut(s)	271
LpnPI	CCDG	3 cut(s)	173, 343, 391
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	2 cut(s)	66, 401
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	5 cut(s)	4, 133, 172, 193, 224
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	2 cut(s)	17, 353
MfeI	CAATTG	1 cut(s)	122
MluCI	AATT	3 cut(s)	104, 122, 380
MnlI	CCTC	7 cut(s)	23, 26, 49, 84, 94, 148, 340
MseI	TTAA	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	256
MunI	CAATTG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	61
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	2 cut(s)	35, 373
NmuCI	GTSAC	2 cut(s)	193, 224
PctI	GAATGC	1 cut(s)	61
PfeI	GAWTC	3 cut(s)	113, 127, 373
PkrI	GCNGC	1 cut(s)	255
PmaCI	CACGTG	1 cut(s)	155
PmlI	CACGTG	1 cut(s)	155
Ppu21I	YACGTR	1 cut(s)	155
PspCI	CACGTG	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	256
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	1 cut(s)	254
Sau3AI	GATC	1 cut(s)	271
SetI	ASST	9 cut(s)	24, 60, 140, 157, 205, 258, 301, 351, 396
SfaNI	GCATC	1 cut(s)	307
Sse9I	AATT	3 cut(s)	104, 122, 380
SspMI	CTAG	2 cut(s)	66, 401
TaaI	ACNGT	2 cut(s)	81, 268
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	2 cut(s)	85, 270
TasI	AATT	3 cut(s)	104, 122, 380
TfiI	GAWTC	3 cut(s)	113, 127, 373
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TseFI	GTSAC	2 cut(s)	193, 224
TseI	GCWGC	1 cut(s)	253
Tsp45I	GTSAC	2 cut(s)	193, 224
TspDTI	ATGAA	6 cut(s)	53, 59, 176, 324, 386, 404
XapI	RAATTY	1 cut(s)	104
XbaI	TCTAGA	1 cut(s)	65
XspI	CTAG	2 cut(s)	66, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.