Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0017446

Physical Location & Seq

Genomic Coordinates Forward (+)

66001596 .. 66005880

Gene Structure 4285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG382700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAAAACTTTGCTCCAAAATTAAAATTTGTACGGTATGTTGGTGATAAAGAATATAGGTGCAGCTTACGCAGGACAATATATGAGCATGTGAAAGTGCATTCCTCAGTATCTGATGTGTTGTCGTTACCTTTCGATGTCCTGTTGACAACATATGACATCGCATTGGCCGATCAAGATTTCCTTTCTCAAATACCATGGAACTATGGAGTAATTGATGAAGTGCAAAGGCTTAAAAACCCTTCCAGTGTTCGGGATATTACACACTTACCATTTGCTGAGCGAGAGTTGATGTTAATAAAGATTGCTGTAAACACTACTGCTAGAAGGGATGTTCTTGATATTGCTGGCATTTTCCGTGCTAAAGATGTTTCTGATCACACAATTACTCTTGATCTTACTGGCGATTTGAATAAAATGATTGCATTGCAGAAGTTACTAGAGCCCTATGGGCTTTGCGAGGAAGCTGCACTCTTATTGACAGATGATGCAAATTTCAATTATGTGTCATATAGACATCCTTCCAACAGGGTTCTATTGTTCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0031334 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0036094 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070035 GO:0070911 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

182

Amino Acids

20.93

Weight (kDa)

5.95

Isoelectric Point (pI)

27.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	5 - 86	3.4e-08	SNF2-related domain
ALS_ss_C	PF10369	95 - 154	1.7e-14	Small subunit of acetolactate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017446)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0299761
rosa_roxburghii	Rroxscaffold_1G00029190
rosa_samantha	Rh1CG186800 Rh2AG392000 Rh2BG097000 Rh2CG099100 Rh2CG378800 Rh2DG096500 Rh4CG209500 Rh5AG382700 Rh6DG310100 Rh7AG468000 Rh7CG085900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	2 cut(s)	26, 493
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	252
AgsI	TTSAA	2 cut(s)	412, 499
AluBI	AGCT	2 cut(s)	66, 467
AluI	AGCT	2 cut(s)	66, 467
AlwNI	CAGNNNCTG	1 cut(s)	113
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	2 cut(s)	63, 467
ApoI	RAATTY	2 cut(s)	26, 493
AsuHPI	GGTGA	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	447
BbvI	GCAGC	2 cut(s)	75, 454
BcgI	CGANNNNNNTGC	2 cut(s)	449, 483
BclI	TGATCA	1 cut(s)	376
BfaI	CTAG	2 cut(s)	324, 440
BglI	GCCNNNNNGGC	1 cut(s)	451
BisI	GCNGC	2 cut(s)	64, 468
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	2 cut(s)	65, 469
BmsI	GCATC	1 cut(s)	478
Bpu1102I	GCTNAGC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse1I	ACTGG	2 cut(s)	246, 406
Bse3DI	GCAATG	1 cut(s)	425
BseDI	CCNNGG	1 cut(s)	197
BseGI	GGATG	2 cut(s)	337, 517
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMI	GCAATG	1 cut(s)	425
BseMII	CTCAG	2 cut(s)	120, 270
BseNI	ACTGG	2 cut(s)	246, 406
BseXI	GCAGC	2 cut(s)	75, 454
BsgI	GTGCAG	2 cut(s)	82, 453
BshFI	GGCC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp143I	GATC	3 cut(s)	172, 376, 394
Bsp1720I	GCTNAGC	1 cut(s)	279
Bsp19I	CCATGG	1 cut(s)	197
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	2 cut(s)	119, 271
BsrDI	GCAATG	1 cut(s)	425
BsrI	ACTGG	2 cut(s)	246, 406
BssECI	CCNNGG	1 cut(s)	197
BssMI	GATC	3 cut(s)	172, 376, 394
BssT1I	CCWWGG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	2 cut(s)	106, 279
BstDSI	CCRYGG	1 cut(s)	197
BstF5I	GGATG	2 cut(s)	337, 517
BstKTI	GATC	3 cut(s)	175, 379, 397
BstMBI	GATC	3 cut(s)	172, 376, 394
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 451
BstNSI	RCATGY	1 cut(s)	92
BstV1I	GCAGC	2 cut(s)	75, 454
BsuRI	GGCC	1 cut(s)	170
BtgI	CCRYGG	1 cut(s)	197
BtgZI	GCGATG	1 cut(s)	145
BtsCI	GGATG	2 cut(s)	337, 517
BtsIMutI	CAGTG	1 cut(s)	253
Cac8I	GCNNGC	1 cut(s)	349
CaiI	CAGNNNCTG	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	2 cut(s)	89, 198
CviJI	RGCY	6 cut(s)	66, 170, 232, 445, 454, 467
CviKI_1	RGCY	6 cut(s)	66, 170, 232, 445, 454, 467
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	2 cut(s)	106, 279
DpnI	GATC	3 cut(s)	174, 378, 396
DpnII	GATC	3 cut(s)	172, 376, 394
EaeI	YGGCCR	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	197
Eco24I	GRGCYC	1 cut(s)	447
EcoT14I	CCWWGG	1 cut(s)	197
EcoT38I	GRGCYC	1 cut(s)	447
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	2 cut(s)	92, 201
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FatI	CATG	2 cut(s)	88, 197
FauNDI	CATATG	1 cut(s)	154
FbaI	TGATCA	1 cut(s)	376
Fnu4HI	GCNGC	2 cut(s)	64, 468
FokI	GGATG	2 cut(s)	344, 504
FriOI	GRGCYC	1 cut(s)	447
Fsp4HI	GCNGC	2 cut(s)	64, 468
FspBI	CTAG	2 cut(s)	324, 440
GluI	GCNGC	2 cut(s)	64, 468
HaeIII	GGCC	1 cut(s)	170
Hin1II	CATG	2 cut(s)	92, 201
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	2 cut(s)	147, 313
Hpy188I	TCNGA	3 cut(s)	115, 376, 545
Hpy188III	TCNNGA	4 cut(s)	176, 254, 338, 392
Hpy8I	GTNNAC	2 cut(s)	147, 313
HpyAV	CCTTC	3 cut(s)	252, 321, 531
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4V	TGCA	7 cut(s)	63, 100, 226, 425, 430, 470, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 451
HpyF3I	CTNAG	2 cut(s)	106, 279
Hsp92II	CATG	2 cut(s)	92, 201
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	3 cut(s)	172, 376, 394
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	6 cut(s)	58, 155, 259, 333, 387, 514
Lsp1109I	GCAGC	2 cut(s)	75, 454
LweI	GCATC	1 cut(s)	478
MaeI	CTAG	2 cut(s)	324, 440
MaeIII	GTNAC	2 cut(s)	126, 435
MalI	GATC	3 cut(s)	174, 378, 396
MboI	GATC	3 cut(s)	172, 376, 394
MhlI	GDGCHC	1 cut(s)	447
MluCI	AATT	6 cut(s)	20, 26, 213, 384, 493, 499
MmeI	TCCRAC	1 cut(s)	549
MnlI	CCTC	2 cut(s)	115, 454
MseI	TTAA	3 cut(s)	23, 234, 296
Mva1269I	GAATGC	1 cut(s)	100
MwoI	GCNNNNNNNGC	2 cut(s)	69, 451
NcoI	CCATGG	1 cut(s)	197
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	3 cut(s)	172, 376, 394
NlaIII	CATG	2 cut(s)	92, 201
NspI	RCATGY	1 cut(s)	92
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PctI	GAATGC	1 cut(s)	100
PkrI	GCNGC	2 cut(s)	65, 469
PstNI	CAGNNNCTG	1 cut(s)	113
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
SaqAI	TTAA	3 cut(s)	23, 234, 296
SatI	GCNGC	2 cut(s)	64, 468
Sau3AI	GATC	3 cut(s)	172, 376, 394
SduI	GDGCHC	1 cut(s)	447
SetI	ASST	4 cut(s)	62, 68, 133, 469
SfaNI	GCATC	1 cut(s)	478
Sse9I	AATT	6 cut(s)	20, 26, 213, 384, 493, 499
SspMI	CTAG	2 cut(s)	324, 440
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	135
TasI	AATT	6 cut(s)	20, 26, 213, 384, 493, 499
Tru1I	TTAA	3 cut(s)	23, 234, 296
Tru9I	TTAA	3 cut(s)	23, 234, 296
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	2 cut(s)	63, 467
TspDTI	ATGAA	1 cut(s)	234
TspGWI	ACGGA	1 cut(s)	347
TspRI	CASTG	1 cut(s)	253
XapI	RAATTY	2 cut(s)	26, 493
XceI	RCATGY	1 cut(s)	92
XspI	CTAG	2 cut(s)	324, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.