Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0017446

Physical Location & Seq

Genomic Coordinates Reverse (-)

51084079 .. 51085828

Gene Structure 1750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG310100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGACCATGGCCTTCGTCCCAGACAGAGGGAGTTCTTCATTGGCTTCACAAAGGGCCAGGTTATTGTTTTCTGTACAACTGGAATGGTAACATCCCTCCTCTACCTTCTTCTCCGTGAGATGAAAATGAATGTTAGGGAGGTACATTCTAGAAAGCCTCAACTGTATCGAACTCGTATCTCTGAGGAATTCAAGGAATCAAAGCAATTGATTCTTGTTACCTCTGATGTATCAGCACGTGGAATGAACTATTCTGATGTTACATTGGTCATTCAGGATGTGACACAATCTCAATGTCTTGTCACAGAAAGTGACTTTAGGGGTAAAGATTTTCAAAGGCAGCTGAAAGAAACCGTCGATCACTTGTTGTCTTTAAAGACTATACCTATATTCAATGAAAATGATGCAGTTAGTACCAGAACAGATTTATGTGAGGATTCTTCTGGTATATTTTGGGACAATGACAGTTTGGCAGCTATACTAGCTAAGGAGCTAAAGGCTGATCTTCTTATCCTTATGAGTGATGTGGAGGGTCTCTACAGTGGGCCTCCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

185

Amino Acids

21.11

Weight (kDa)

5.67

Isoelectric Point (pI)

30.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	18 - 92	5e-12	Helicase conserved C-terminal domain
AA_kinase	PF00696	22 - 185	3e-15	Amino acid kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017446)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0299761
rosa_roxburghii	Rroxscaffold_1G00029190
rosa_samantha	Rh1CG186800 Rh2AG392000 Rh2BG097000 Rh2CG099100 Rh2CG378800 Rh2DG096500 Rh4CG209500 Rh5AG382700 Rh6DG310100 Rh7AG468000 Rh7CG085900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	188
AcvI	CACGTG	1 cut(s)	239
AfaI	GTAC	3 cut(s)	76, 144, 415
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	3 cut(s)	193, 335, 394
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	4 cut(s)	343, 476, 485, 493
AluI	AGCT	4 cut(s)	343, 476, 485, 493
Alw26I	GTCTC	1 cut(s)	539
AoxI	GGCC	3 cut(s)	10, 55, 545
ApeKI	GCWGC	2 cut(s)	340, 473
ApoI	RAATTY	1 cut(s)	188
AspS9I	GGNCC	3 cut(s)	4, 55, 545
AvaII	GGWCC	1 cut(s)	4
BbrPI	CACGTG	1 cut(s)	239
BbvI	GCAGC	2 cut(s)	352, 485
BciT130I	CCWGG	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	539
BfaI	CTAG	2 cut(s)	150, 482
BfmI	CTRYAG	1 cut(s)	538
BisI	GCNGC	2 cut(s)	341, 474
BlsI	GCNGC	2 cut(s)	342, 475
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	3 cut(s)	4, 55, 545
BmrFI	CCNGG	1 cut(s)	59
BmsI	GCATC	1 cut(s)	394
Bpu10I	CCTNAGC	1 cut(s)	486
BsaAI	YACGTR	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	539
BsaJI	CCNNGG	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	7
BseGI	GGATG	2 cut(s)	92, 283
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	2 cut(s)	352, 485
BshFI	GGCC	3 cut(s)	12, 57, 547
BslFI	GGGAC	2 cut(s)	3, 470
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	539
BsmFI	GGGAC	2 cut(s)	3, 470
BsnI	GGCC	3 cut(s)	12, 57, 547
Bso31I	GGTCTC	1 cut(s)	539
Bsp1407I	TGTACA	1 cut(s)	74
Bsp143I	GATC	2 cut(s)	358, 502
Bsp19I	CCATGG	1 cut(s)	7
BspANI	GGCC	3 cut(s)	12, 57, 547
BspCNI	CTCAG	1 cut(s)	175
BspTNI	GGTCTC	1 cut(s)	539
BsrGI	TGTACA	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	7
BssMI	GATC	2 cut(s)	358, 502
BssT1I	CCWWGG	1 cut(s)	7
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	4 cut(s)	165, 355, 467, 542
BstAUI	TGTACA	1 cut(s)	74
BstBAI	YACGTR	1 cut(s)	239
BstDEI	CTNAG	2 cut(s)	183, 486
BstDSI	CCRYGG	1 cut(s)	7
BstF5I	GGATG	2 cut(s)	92, 283
BstKTI	GATC	2 cut(s)	361, 505
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	2 cut(s)	358, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	57
BstSFI	CTRYAG	1 cut(s)	538
BstV1I	GCAGC	2 cut(s)	352, 485
BsuRI	GGCC	3 cut(s)	12, 57, 547
BtgI	CCRYGG	1 cut(s)	7
BtsCI	GGATG	2 cut(s)	92, 283
BtsIMutI	CAGTG	1 cut(s)	547
Cfr13I	GGNCC	3 cut(s)	4, 55, 545
Csp6I	GTAC	3 cut(s)	75, 143, 414
CviAII	CATG	1 cut(s)	8
CviQI	GTAC	3 cut(s)	75, 143, 414
DdeI	CTNAG	2 cut(s)	183, 486
DpnI	GATC	2 cut(s)	360, 504
DpnII	GATC	2 cut(s)	358, 502
DraI	TTTAAA	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	7
Eco31I	GGTCTC	1 cut(s)	539
Eco47I	GGWCC	1 cut(s)	4
Eco72I	CACGTG	1 cut(s)	239
EcoRI	GAATTC	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	7
ErhI	CCWWGG	1 cut(s)	7
FaeI	CATG	1 cut(s)	11
FaiI	YATR	7 cut(s)	9, 383, 389, 430, 449, 479, 518
FaqI	GGGAC	2 cut(s)	3, 470
FatI	CATG	1 cut(s)	7
Fnu4HI	GCNGC	2 cut(s)	341, 474
FokI	GGATG	2 cut(s)	79, 290
Fsp4HI	GCNGC	2 cut(s)	341, 474
FspBI	CTAG	2 cut(s)	150, 482
GluI	GCNGC	2 cut(s)	341, 474
HaeIII	GGCC	3 cut(s)	12, 57, 547
Hin1II	CATG	1 cut(s)	11
HinfI	GANTC	3 cut(s)	197, 211, 437
Hpy188I	TCNGA	3 cut(s)	184, 226, 256
Hpy188III	TCNNGA	2 cut(s)	150, 275
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	2 cut(s)	23, 116
HpyCH4III	ACNGT	4 cut(s)	165, 355, 467, 542
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	1 cut(s)	407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	2 cut(s)	183, 486
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	1 cut(s)	11
Kzo9I	GATC	2 cut(s)	358, 502
LmnI	GCTCC	1 cut(s)	490
LpnPI	CCDG	7 cut(s)	34, 44, 66, 71, 260, 429, 430
Lsp1109I	GCAGC	2 cut(s)	352, 485
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	2 cut(s)	150, 482
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	6 cut(s)	88, 217, 259, 280, 301, 311
MalI	GATC	2 cut(s)	360, 504
MboI	GATC	2 cut(s)	358, 502
MboII	GAAGA	4 cut(s)	28, 101, 432, 497
MfeI	CAATTG	1 cut(s)	206
MluCI	AATT	2 cut(s)	188, 206
MseI	TTAA	1 cut(s)	374
MspA1I	CMGCKG	1 cut(s)	343
MspR9I	CCNGG	1 cut(s)	59
MunI	CAATTG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	482
NcoI	CCATGG	1 cut(s)	7
NdeII	GATC	2 cut(s)	358, 502
NlaIII	CATG	1 cut(s)	11
NmuCI	GTSAC	3 cut(s)	280, 301, 311
PfeI	GAWTC	3 cut(s)	197, 211, 437
PkrI	GCNGC	2 cut(s)	342, 475
PmaCI	CACGTG	1 cut(s)	239
PmlI	CACGTG	1 cut(s)	239
Ppu21I	YACGTR	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	57
PspCI	CACGTG	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	57
PspPI	GGNCC	3 cut(s)	4, 55, 545
PvuII	CAGCTG	1 cut(s)	343
RsaI	GTAC	3 cut(s)	76, 144, 415
RsaNI	GTAC	3 cut(s)	75, 143, 414
SaqAI	TTAA	1 cut(s)	374
SatI	GCNGC	2 cut(s)	341, 474
Sau3AI	GATC	2 cut(s)	358, 502
Sau96I	GGNCC	3 cut(s)	4, 55, 545
ScrFI	CCNGG	1 cut(s)	59
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	1 cut(s)	538
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	2 cut(s)	188, 206
SspMI	CTAG	2 cut(s)	150, 482
StyD4I	CCNGG	1 cut(s)	57
StyI	CCWWGG	1 cut(s)	7
TaaI	ACNGT	4 cut(s)	165, 355, 467, 542
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	2 cut(s)	169, 357
TasI	AATT	2 cut(s)	188, 206
TatI	WGTACW	1 cut(s)	74
TfiI	GAWTC	3 cut(s)	197, 211, 437
Tru1I	TTAA	1 cut(s)	374
Tru9I	TTAA	1 cut(s)	374
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	3 cut(s)	280, 301, 311
TseI	GCWGC	2 cut(s)	340, 473
Tsp45I	GTSAC	3 cut(s)	280, 301, 311
TspDTI	ATGAA	5 cut(s)	28, 137, 143, 260, 411
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	1 cut(s)	547
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	188
XbaI	TCTAGA	1 cut(s)	149
XspI	CTAG	2 cut(s)	150, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.