RchiOBHm_Chr6g0300871

Deoxyuridine 5'-triphosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010464
Physical Location & Seq
Forward (+)
61561209 .. 61562434
1226 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 663 bp
ATGGCGGGAATATTTGGCGCCACAATCCCCATAACATCGTCCTTCGCGCCTCCTTCTCTATTTAAACCACCCCAATCTCCCTACTTGATCCTGAATCTCCGTCATCCCAAAAACCCAAATTACCGCCGTAATTCTCTCACCCAAATGGCCCAGCAAAACGGAAACCACGAAGTCACGGAGCGAGCTCCCAAGATCGCCAAGCTCCACCACAACGGCGACGTTTCGAAAACGACTTCCGCCGGTTTTTTCAGGGTGAAGAAGCTCTCTGAAAATGCCGTTTTGCCGTCCAGAGGCTCTCCTCTCTCTGCTGGTTATGACCTCTCAAGCGCAACGGAGACGAAGATACCAGCCAGAGGAAAAGCCTTGGTCCCAACCGATCTGAGCATTGCAGTTCCTGAAGGAACCTATGCCCGAGTTGCGCCGCGATCAGGGCTGACATGGAAGCACTCCATTGATGTGGGAGCTGGAGTGATAGATGCCGATTACAGAGGCCCGGTTGGAGTGATCTTGTTCAACCATTCTGATGTCGATTTCGAGATCAAGGTGGGTGATAGGATTGCTCAGCTGATAATTGAGATCATCATCACCCCTGATGTTGTGGAGGTTGAGGATTTGGACTCCACTGTCAGAGGTGAAGGAGGGTTTGGGTCTACAGGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000287 GO:0003674 GO:0003824 GO:0004170 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006220 GO:0006221 GO:0006226 GO:0006244 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009141 GO:0009143 GO:0009147 GO:0009149 GO:0009157 GO:0009162 GO:0009165 GO:0009166 GO:0009176 GO:0009177 GO:0009200 GO:0009204 GO:0009211 GO:0009213 GO:0009219 GO:0009221 GO:0009223 GO:0009262 GO:0009263 GO:0009264 GO:0009265 GO:0009394 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042802 GO:0043167 GO:0043169 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046078 GO:0046080 GO:0046081 GO:0046385 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0046872 GO:0047429 GO:0050896 GO:0051716 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0072529 GO:0090304 GO:0090407 GO:1901135 GO:1901136 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00240 ko00983 ko01100 map00240 map00983 map01100
Pfam Domains
Protein Families
dUTPase

Protein Analysis

220

Amino Acids

23.57

Weight (kDa)

7.99

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dUTPase PF00692 91 - 219 5.4e-45 dUTPase
DCD PF22769 121 - 192 6.3e-08 dCTP deaminase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 623
AccB1I GGYRCC 1 cut(s) 17
AccI GTMKAC 1 cut(s) 650
AccII CGCG 2 cut(s) 47, 424
AciI CCGC 4 cut(s) 5, 124, 237, 422
AclWI GGATC 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 417
AcyI GRCGYC 1 cut(s) 18
AfiI CCNNNNNNNGG 3 cut(s) 290, 353, 428
AgsI TTSAA 1 cut(s) 514
AjuI GAANNNNNNNTTGG 2 cut(s) 627, 659
AluBI AGCT 5 cut(s) 185, 202, 262, 464, 565
AluI AGCT 5 cut(s) 185, 202, 262, 464, 565
Alw21I GWGCWC 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 329
AlwI GGATC 1 cut(s) 82
AlwNI CAGNNNCTG 1 cut(s) 395
Ama87I CYCGRG 1 cut(s) 411
AoxI GGCC 2 cut(s) 147, 490
AspLEI GCGC 4 cut(s) 20, 49, 329, 421
AspS9I GGNCC 3 cut(s) 148, 367, 491
AsuC2I CCSGG 1 cut(s) 494
AsuHPI GGTGA 5 cut(s) 130, 265, 560, 577, 644
AsuII TTCGAA 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 411
AvaII GGWCC 1 cut(s) 367
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 187
BceAI ACGGC 4 cut(s) 111, 229, 260, 268
BcnI CCSGG 1 cut(s) 494
BcoDI GTCTC 1 cut(s) 329
BfmI CTRYAG 1 cut(s) 651
BfoI RGCGCY 1 cut(s) 21
BisI GCNGC 1 cut(s) 422
BlpI GCTNAGC 1 cut(s) 561
BlsI GCNGC 1 cut(s) 423
Bme1390I CCNGG 1 cut(s) 494
Bme18I GGWCC 1 cut(s) 367
BmeT110I CYCGRG 1 cut(s) 411
BmgT120I GGNCC 3 cut(s) 148, 367, 491
BmiI GGNNCC 3 cut(s) 19, 369, 403
BmrFI CCNGG 1 cut(s) 494
BmsI GCATC 1 cut(s) 466
BpmI CTGGAG 1 cut(s) 486
Bpu1102I GCTNAGC 1 cut(s) 561
Bpu14I TTCGAA 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 307
BpuMI CCSGG 1 cut(s) 494
BsaBI GATNNNNATC 1 cut(s) 581
BsaHI GRCGYC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 363
BsaXI ACNNNNNCTCC 2 cut(s) 453, 483
Bsc4I CCNNNNNNNGG 3 cut(s) 290, 353, 428
Bse118I RCCGGY 1 cut(s) 239
Bse3DI GCAATG 1 cut(s) 384
Bse8I GATNNNNATC 1 cut(s) 581
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 1 cut(s) 103
BseJI GATNNNNATC 1 cut(s) 581
BseLI CCNNNNNNNGG 3 cut(s) 290, 353, 428
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 2 cut(s) 371, 575
BseRI GAGGAG 1 cut(s) 288
BseYI CCCAGC 1 cut(s) 150
Bsh1236I CGCG 2 cut(s) 47, 424
BshFI GGCC 2 cut(s) 149, 492
BshNI GGYRCC 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 187
BsiHKCI CYCGRG 1 cut(s) 411
BsiSI CCGG 2 cut(s) 240, 494
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 3 cut(s) 290, 353, 428
BsmAI GTCTC 1 cut(s) 329
BsmBI CGTCTC 1 cut(s) 329
BsmFI GGGAC 1 cut(s) 353
BsnI GGCC 2 cut(s) 149, 492
BsoBI CYCGRG 1 cut(s) 411
Bsp119I TTCGAA 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 7 cut(s) 87, 192, 376, 425, 504, 537, 576
Bsp1720I GCTNAGC 1 cut(s) 561
BspACI CCGC 4 cut(s) 5, 124, 237, 422
BspANI GGCC 2 cut(s) 149, 492
BspCNI CTCAG 2 cut(s) 372, 574
BspFNI CGCG 2 cut(s) 47, 424
BspLI GGNNCC 3 cut(s) 19, 369, 403
BspPI GGATC 1 cut(s) 82
BspT104I TTCGAA 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 17
BsrDI GCAATG 1 cut(s) 384
BsrFI RCCGGY 1 cut(s) 239
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 7 cut(s) 87, 192, 376, 425, 504, 537, 576
BssNI GRCGYC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 363
Bst4CI ACNGT 1 cut(s) 625
BstACI GRCGYC 1 cut(s) 18
BstBI TTCGAA 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 2 cut(s) 380, 561
BstF5I GGATG 1 cut(s) 103
BstFNI CGCG 2 cut(s) 47, 424
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 4 cut(s) 20, 49, 329, 421
BstKTI GATC 7 cut(s) 90, 195, 379, 428, 507, 540, 579
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 7 cut(s) 87, 192, 376, 425, 504, 537, 576
BstMWI GCNNNNNNNGC 2 cut(s) 416, 430
BstSCI CCNGG 1 cut(s) 492
BstSFI CTRYAG 1 cut(s) 651
BstUI CGCG 2 cut(s) 47, 424
BstXI CCANNNNNNTGG 1 cut(s) 457
BsuRI GGCC 2 cut(s) 149, 492
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 621
Cac8I GCNNGC 1 cut(s) 183
CaiI CAGNNNCTG 1 cut(s) 395
CfoI GCGC 4 cut(s) 20, 49, 329, 421
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 3 cut(s) 148, 367, 491
CviAII CATG 1 cut(s) 438
DdeI CTNAG 2 cut(s) 380, 561
DinI GGCGCC 1 cut(s) 19
DpnI GATC 7 cut(s) 89, 194, 378, 427, 506, 539, 578
DpnII GATC 7 cut(s) 87, 192, 376, 425, 504, 537, 576
DraI TTTAAA 1 cut(s) 64
DrdI GACNNNNNNGTC 1 cut(s) 623
DseDI GACNNNNNNGTC 1 cut(s) 623
EciI GGCGGA 1 cut(s) 226
Ecl136II GAGCTC 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 363
Eco24I GRGCYC 1 cut(s) 187
Eco47I GGWCC 1 cut(s) 367
Eco53kI GAGCTC 1 cut(s) 185
Eco57I CTGAAG 1 cut(s) 417
Eco88I CYCGRG 1 cut(s) 411
EcoICRI GAGCTC 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 363
EcoT38I GRGCYC 1 cut(s) 187
EgeI GGCGCC 1 cut(s) 19
EheI GGCGCC 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 363
Esp3I CGTCTC 1 cut(s) 329
FaeI CATG 1 cut(s) 441
FaiI YATR 4 cut(s) 32, 315, 408, 439
FaqI GGGAC 1 cut(s) 353
FatI CATG 1 cut(s) 437
FblI GTMKAC 1 cut(s) 650
Fnu4HI GCNGC 1 cut(s) 422
FokI GGATG 1 cut(s) 90
FriOI GRGCYC 1 cut(s) 187
Fsp4HI GCNGC 1 cut(s) 422
GlaI GCGC 4 cut(s) 19, 48, 328, 420
GluI GCNGC 1 cut(s) 422
GsaI CCCAGC 1 cut(s) 154
GsuI CTGGAG 1 cut(s) 486
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 2 cut(s) 149, 492
HapII CCGG 2 cut(s) 240, 494
HhaI GCGC 4 cut(s) 20, 49, 329, 421
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 1 cut(s) 441
Hin6I GCGC 4 cut(s) 18, 47, 327, 419
HinP1I GCGC 4 cut(s) 18, 47, 327, 419
HinfI GANTC 2 cut(s) 94, 617
HpaII CCGG 2 cut(s) 240, 494
HphI GGTGA 5 cut(s) 130, 265, 560, 577, 644
Hpy166II GTNNAC 1 cut(s) 651
Hpy188I TCNGA 4 cut(s) 268, 381, 523, 629
Hpy188III TCNNGA 4 cut(s) 91, 288, 395, 535
Hpy8I GTNNAC 1 cut(s) 651
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 4 cut(s) 52, 63, 392, 629
HpyCH4III ACNGT 1 cut(s) 625
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 1 cut(s) 389
HpyF10VI GCNNNNNNNGC 2 cut(s) 416, 430
HpyF3I CTNAG 2 cut(s) 380, 561
HpySE526I ACGT 1 cut(s) 219
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 1 cut(s) 441
HspAI GCGC 4 cut(s) 18, 47, 327, 419
KasI GGCGCC 1 cut(s) 17
Kzo9I GATC 7 cut(s) 87, 192, 376, 425, 504, 537, 576
LmnI GCTCC 4 cut(s) 178, 190, 207, 461
LweI GCATC 1 cut(s) 466
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 172
MalI GATC 7 cut(s) 89, 194, 378, 427, 506, 539, 578
MboI GATC 7 cut(s) 87, 192, 376, 425, 504, 537, 576
MboII GAAGA 2 cut(s) 268, 352
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 3 cut(s) 118, 130, 570
Mly113I GGCGCC 1 cut(s) 18
MlyI GAGTC 1 cut(s) 611
MmeI TCCRAC 1 cut(s) 478
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 3 cut(s) 143, 455, 522
MspA1I CMGCKG 1 cut(s) 565
MspI CCGG 2 cut(s) 240, 494
MspR9I CCNGG 1 cut(s) 494
MvnI CGCG 2 cut(s) 47, 424
MwoI GCNNNNNNNGC 2 cut(s) 416, 430
NarI GGCGCC 1 cut(s) 18
NciI CCSGG 1 cut(s) 494
NdeII GATC 7 cut(s) 87, 192, 376, 425, 504, 537, 576
NlaIII CATG 1 cut(s) 441
NlaIV GGNNCC 3 cut(s) 19, 369, 403
NmuCI GTSAC 1 cut(s) 172
NspV TTCGAA 1 cut(s) 224
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PfeI GAWTC 1 cut(s) 94
PkrI GCNGC 1 cut(s) 423
PleI GAGTC 1 cut(s) 611
PluTI GGCGCC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 611
Psp124BI GAGCTC 1 cut(s) 187
PspFI CCCAGC 1 cut(s) 150
PspN4I GGNNCC 3 cut(s) 19, 369, 403
PspPI GGNCC 3 cut(s) 148, 367, 491
PstNI CAGNNNCTG 1 cut(s) 395
PvuII CAGCTG 1 cut(s) 565
RseI CAYNNNNRTG 3 cut(s) 143, 455, 522
SacI GAGCTC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 1 cut(s) 422
Sau3AI GATC 7 cut(s) 87, 192, 376, 425, 504, 537, 576
Sau96I GGNCC 3 cut(s) 148, 367, 491
SchI GAGTC 1 cut(s) 611
ScrFI CCNGG 1 cut(s) 494
SduI GDGCHC 1 cut(s) 187
SfaNI GCATC 1 cut(s) 466
SfcI CTRYAG 1 cut(s) 651
SfoI GGCGCC 1 cut(s) 19
SfuI TTCGAA 1 cut(s) 224
SinI GGWCC 1 cut(s) 367
SmiMI CAYNNNNRTG 3 cut(s) 143, 455, 522
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
Sse9I AATT 3 cut(s) 118, 130, 570
SsiI CCGC 4 cut(s) 5, 124, 237, 422
SspDI GGCGCC 1 cut(s) 17
SspI AATATT 1 cut(s) 12
SstI GAGCTC 1 cut(s) 187
StyD4I CCNGG 1 cut(s) 492
StyI CCWWGG 1 cut(s) 363
TaaI ACNGT 1 cut(s) 625
TaiI ACGT 1 cut(s) 222
TaqI TCGA 3 cut(s) 224, 528, 534
TasI AATT 3 cut(s) 118, 130, 570
TauI GCSGC 1 cut(s) 424
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 1 cut(s) 628
TseFI GTSAC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 172
TspGWI ACGGA 4 cut(s) 89, 174, 191, 347
TspRI CASTG 1 cut(s) 628
VpaK11BI GGWCC 1 cut(s) 367
XmiI GTMKAC 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.