Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014457

Physical Location & Seq

Genomic Coordinates Reverse (-)

768907 .. 772049

Gene Structure 3143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGTGTCGGACCAAGAAATAGCCGAAGGGGTGGAGACTGTGCTCCGTCAACAAGGCCCTAACAACGTCACCTCCGTAAACGGCGTCGTTCAGCAGCTCGAGGCCAAGCTAGGGTTGGACCTCTCCCACAAGGCTGCCTTCATTCGCGACCAGATCAGCTTCCTCCTCCGCCCCTATCCCCTGCACCACCACCAACAACAACAACAACAACCCCAACCGCCCCCACCAAAAGACCATTTTGCCCTCCACCACAACCCTTACCACCACCACCCTCAGTTCGCTCCCACACCATTCCTCCCCCAACAATTTCCTTCCCATTTTGCCCTCCACCCCCACTCCCGCCCTCCCCCTGAGGCCTACACCTTCCAGGCGCAGCAGCCGCCTCAGCAGCAGCTCCGGCGTCCGGTGGCCCTGCCGCAGCAGCCGCCTCCCAAGTTCGAGGTCCTCGCCTCCCAGAATGCCACCGCCGTCGCCCCGGAACCGCCCAAAGACAGTGCTCCGACTACTGGAACCAAAAGAAGGGGTGGGGCTGGGGGTTTAAATAAAGTCTGTGGTGTCTCACCTGAGCTTCAGGTTGTTGTTGGTGAACCGGCCTTGCCAAGGACCGAGATTGTGAAGCAGCTCTGGGCATATATAAGGAAAAACAACCTCCAAGATCCAAGTAATAAGAGAAAGATTATTTGTGATGATGCCTTGCGCGTGGTATTTGAGACTGATTGTACTGACATGTTCAAGATGAATAAGCTGCTGTCCAAGCATATAATAACCCTTGGACCTAAAAAGGAGCCAACTCAAGCTAAGCGAGTAAAGTTAGATGCTGAGTCTGCAACTGACACTGATAATACTCAACCTGGTTCCTCTACTGTTACAATATCTGAAGCACTAGCTAAGTTTCTGGGTTTGGAAGGGAGGGAGATGCTCAAATCTGAGGCAATAAGACTTGTTTGGGAATATGTAAAGGCTAACAATTTGGAGGATCCTGTAAATTCTATGGTGATTGTATGTGATCCAAAGCTCCATGAGCTTCTTGGATGCGAAAGCATATCTGCTCTGGGGGTTCAAGAGATGTTAGACCGCTATCATTTCATCAAACAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

366

Amino Acids

40.87

Weight (kDa)

7.75

Isoelectric Point (pI)

60.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	2 - 53	4.5e-12	DEK C terminal domain
SWIB	PF02201	184 - 254	1.5e-28	SWIB/MDM2 domain
SWIB	PF02201	289 - 360	1.1e-17	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22360
fragaria_vesca	FvH4_3g00950
malus_domestica	MD05G1358100.v1.1 MD10G1332000.v1.1
prunus_persica	Prupe.4G010100_v2.0.a1 Prupe.4G010100_v2.0.a1
pyrus_communis	pycom05g32390
rosa_chinensis	RchiOBHm_Chr5g0001471
rosa_laevigata	RLG00000030931
rosa_multiflora	Rmu_sc0003749.1_g000011
rosa_roxburghii	Rroxscaffold_1G00074920
rosa_rugosa	Rorug04G0390500
rosa_samantha	Rh5AG011400 Rh5BG013900 Rh5CG012400 Rh5DG011600
rosa_wichuraiana	Rw5G001080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	147, 699
AciI	CCGC	9 cut(s)	169, 218, 340, 380, 416, 425, 465, 482, 1075
AclWI	GGATC	4 cut(s)	650, 971, 984, 1001
AcsI	RAATTY	1 cut(s)	985
AcuI	CTGAAG	2 cut(s)	554, 897
AcyI	GRCGYC	2 cut(s)	84, 400
AfaI	GTAC	1 cut(s)	721
AfiI	CCNNNNNNNGG	5 cut(s)	111, 403, 506, 519, 600
AflIII	ACRYGT	1 cut(s)	726
AgsI	TTSAA	2 cut(s)	733, 1061
AjnI	CCWGG	2 cut(s)	366, 850
Alw21I	GWGCWC	2 cut(s)	45, 499
Alw26I	GTCTC	3 cut(s)	29, 562, 704
AlwI	GGATC	4 cut(s)	650, 971, 984, 1001
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	5 cut(s)	55, 102, 354, 408, 591
ApoI	RAATTY	1 cut(s)	985
AspLEI	GCGC	2 cut(s)	373, 699
AspS9I	GGNCC	7 cut(s)	10, 56, 118, 409, 442, 603, 773
AsuC2I	CCSGG	1 cut(s)	476
AsuHPI	GGTGA	4 cut(s)	61, 552, 596, 1006
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	5 cut(s)	10, 118, 442, 603, 773
AxyI	CCTNAGG	1 cut(s)	351
BamHI	GGATCC	1 cut(s)	976
Bbv12I	GWGCWC	2 cut(s)	45, 499
BbvCI	CCTCAGC	1 cut(s)	384
BceAI	ACGGC	2 cut(s)	97, 452
BciT130I	CCWGG	2 cut(s)	368, 852
BcnI	CCSGG	1 cut(s)	476
BcoDI	GTCTC	3 cut(s)	29, 562, 704
BfaI	CTAG	2 cut(s)	110, 884
BlpI	GCTNAGC	1 cut(s)	798
Bme1390I	CCNGG	3 cut(s)	368, 476, 852
Bme18I	GGWCC	5 cut(s)	10, 118, 442, 603, 773
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	7 cut(s)	10, 56, 118, 409, 442, 603, 773
BmiI	GGNNCC	5 cut(s)	480, 511, 786, 856, 978
BmrFI	CCNGG	3 cut(s)	368, 476, 852
BmsI	GCATC	4 cut(s)	679, 805, 906, 1022
Bpu10I	CCTNAGC	2 cut(s)	384, 564
Bpu1102I	GCTNAGC	1 cut(s)	798
BpuEI	CTTGAG	1 cut(s)	777
BpuMI	CCSGG	1 cut(s)	476
BsaHI	GRCGYC	2 cut(s)	84, 400
BsaJI	CCNNGG	3 cut(s)	474, 599, 769
BsaWI	WCCGGW	1 cut(s)	403
BsaXI	ACNNNNNCTCC	6 cut(s)	56, 86, 279, 309, 320, 350
Bsc4I	CCNNNNNNNGG	5 cut(s)	111, 403, 506, 519, 600
Bse118I	RCCGGY	1 cut(s)	589
Bse1I	ACTGG	1 cut(s)	511
Bse21I	CCTNAGG	1 cut(s)	351
BseBI	CCWGG	2 cut(s)	368, 852
BseDI	CCNNGG	3 cut(s)	474, 599, 769
BseGI	GGATG	1 cut(s)	1037
BseLI	CCNNNNNNNGG	5 cut(s)	111, 403, 506, 519, 600
BseMII	CTCAG	6 cut(s)	287, 342, 398, 555, 810, 918
BseNI	ACTGG	1 cut(s)	511
BseRI	GAGGAG	1 cut(s)	155
BseYI	CCCAGC	1 cut(s)	530
BsgI	GTGCAG	1 cut(s)	167
Bsh1236I	CGCG	2 cut(s)	147, 699
BshFI	GGCC	5 cut(s)	57, 104, 356, 410, 593
BsiHKAI	GWGCWC	2 cut(s)	45, 499
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	4 cut(s)	397, 404, 476, 590
BslI	CCNNNNNNNGG	5 cut(s)	111, 403, 506, 519, 600
BsmAI	GTCTC	3 cut(s)	29, 562, 704
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	5 cut(s)	57, 104, 356, 410, 593
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	45, 499
Bsp143I	GATC	4 cut(s)	153, 655, 976, 1006
Bsp1720I	GCTNAGC	1 cut(s)	798
Bsp68I	TCGCGA	1 cut(s)	147
BspACI	CCGC	9 cut(s)	169, 218, 340, 380, 416, 425, 465, 482, 1075
BspANI	GGCC	5 cut(s)	57, 104, 356, 410, 593
BspCNI	CTCAG	6 cut(s)	286, 343, 397, 556, 811, 919
BspFNI	CGCG	2 cut(s)	147, 699
BspHI	TCATGA	1 cut(s)	1097
BspLI	GGNNCC	5 cut(s)	480, 511, 786, 856, 978
BspPI	GGATC	4 cut(s)	650, 971, 984, 1001
BsrFI	RCCGGY	1 cut(s)	589
BsrI	ACTGG	1 cut(s)	511
BssAI	RCCGGY	1 cut(s)	589
BssECI	CCNNGG	3 cut(s)	474, 599, 769
BssMI	GATC	4 cut(s)	153, 655, 976, 1006
BssNI	GRCGYC	2 cut(s)	84, 400
BssT1I	CCWWGG	2 cut(s)	599, 769
Bst2UI	CCWGG	2 cut(s)	368, 852
Bst4CI	ACNGT	4 cut(s)	40, 494, 865, 1095
BstACI	GRCGYC	2 cut(s)	84, 400
BstDEI	CTNAG	8 cut(s)	273, 351, 384, 564, 798, 819, 888, 927
BstENI	CCTNNNNNAGG	1 cut(s)	598
BstF5I	GGATG	1 cut(s)	1037
BstFNI	CGCG	2 cut(s)	147, 699
BstHHI	GCGC	2 cut(s)	373, 699
BstKTI	GATC	4 cut(s)	156, 658, 979, 1009
BstMAI	GTCTC	3 cut(s)	29, 562, 704
BstMBI	GATC	4 cut(s)	153, 655, 976, 1006
BstMWI	GCNNNNNNNGC	9 cut(s)	379, 385, 388, 397, 421, 424, 754, 824, 1021
BstNI	CCWGG	2 cut(s)	368, 852
BstNSI	RCATGY	1 cut(s)	730
BstSCI	CCNGG	3 cut(s)	366, 474, 850
BstUI	CGCG	2 cut(s)	147, 699
BstX2I	RGATCY	2 cut(s)	655, 976
BstYI	RGATCY	2 cut(s)	655, 976
Bsu36I	CCTNAGG	1 cut(s)	351
BsuRI	GGCC	5 cut(s)	57, 104, 356, 410, 593
BtsCI	GGATG	1 cut(s)	1037
BtsIMutI	CAGTG	2 cut(s)	499, 834
BtuMI	TCGCGA	1 cut(s)	147
CciI	TCATGA	1 cut(s)	1097
CfoI	GCGC	2 cut(s)	373, 699
Cfr10I	RCCGGY	1 cut(s)	589
Cfr13I	GGNCC	7 cut(s)	10, 56, 118, 409, 442, 603, 773
CseI	GACGC	2 cut(s)	73, 389
CsiI	ACCWGGT	1 cut(s)	850
Csp6I	GTAC	1 cut(s)	720
CviAII	CATG	3 cut(s)	727, 1019, 1098
CviQI	GTAC	1 cut(s)	720
DdeI	CTNAG	8 cut(s)	273, 351, 384, 564, 798, 819, 888, 927
DpnI	GATC	4 cut(s)	155, 657, 978, 1008
DpnII	GATC	4 cut(s)	153, 655, 976, 1006
DraI	TTTAAA	1 cut(s)	540
EciI	GGCGGA	1 cut(s)	158
Eco130I	CCWWGG	2 cut(s)	599, 769
Eco147I	AGGCCT	1 cut(s)	356
Eco47I	GGWCC	5 cut(s)	10, 118, 442, 603, 773
Eco57I	CTGAAG	2 cut(s)	554, 897
Eco81I	CCTNAGG	1 cut(s)	351
Eco88I	CYCGRG	1 cut(s)	98
EcoNI	CCTNNNNNAGG	1 cut(s)	598
EcoO109I	RGGNCCY	2 cut(s)	56, 442
EcoRII	CCWGG	2 cut(s)	366, 850
EcoT14I	CCWWGG	2 cut(s)	599, 769
ErhI	CCWWGG	2 cut(s)	599, 769
FaeI	CATG	3 cut(s)	730, 1022, 1101
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	3 cut(s)	726, 1018, 1097
FauI	CCCGC	1 cut(s)	347
FokI	GGATG	1 cut(s)	1044
FspBI	CTAG	2 cut(s)	110, 884
GlaI	GCGC	2 cut(s)	372, 698
GsaI	CCCAGC	1 cut(s)	534
HaeIII	GGCC	5 cut(s)	57, 104, 356, 410, 593
HapII	CCGG	4 cut(s)	397, 404, 476, 590
HgaI	GACGC	2 cut(s)	73, 389
HhaI	GCGC	2 cut(s)	373, 699
Hin1I	GRCGYC	2 cut(s)	84, 400
Hin1II	CATG	3 cut(s)	730, 1022, 1101
Hin6I	GCGC	2 cut(s)	371, 697
HinP1I	GCGC	2 cut(s)	371, 697
HincII	GTYRAC	1 cut(s)	50
HindII	GTYRAC	1 cut(s)	50
HinfI	GANTC	1 cut(s)	821
HpaII	CCGG	4 cut(s)	397, 404, 476, 590
HphI	GGTGA	4 cut(s)	61, 552, 596, 1006
Hpy166II	GTNNAC	3 cut(s)	50, 79, 587
Hpy188I	TCNGA	4 cut(s)	10, 501, 877, 928
Hpy188III	TCNNGA	4 cut(s)	146, 733, 1061, 1098
Hpy8I	GTNNAC	3 cut(s)	50, 79, 587
Hpy99I	CGWCG	2 cut(s)	89, 473
HpyAV	CCTTC	6 cut(s)	20, 148, 321, 373, 513, 899
HpyCH4III	ACNGT	4 cut(s)	40, 494, 865, 1095
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	2 cut(s)	184, 827
HpyF10VI	GCNNNNNNNGC	9 cut(s)	379, 385, 388, 397, 421, 424, 754, 824, 1021
HpyF3I	CTNAG	8 cut(s)	273, 351, 384, 564, 798, 819, 888, 927
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	2 cut(s)	84, 400
Hsp92II	CATG	3 cut(s)	730, 1022, 1101
HspAI	GCGC	2 cut(s)	371, 697
Kzo9I	GATC	4 cut(s)	153, 655, 976, 1006
LmnI	GCTCC	6 cut(s)	48, 286, 399, 502, 784, 1020
LweI	GCATC	4 cut(s)	679, 805, 906, 1022
MabI	ACCWGGT	1 cut(s)	850
MaeI	CTAG	2 cut(s)	110, 884
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	67, 865
MalI	GATC	4 cut(s)	155, 657, 978, 1008
MboI	GATC	4 cut(s)	153, 655, 976, 1006
MflI	RGATCY	2 cut(s)	655, 976
MhlI	GDGCHC	2 cut(s)	45, 499
MluCI	AATT	3 cut(s)	305, 967, 985
MlyI	GAGTC	1 cut(s)	830
MmeI	TCCRAC	2 cut(s)	96, 524
MseI	TTAA	1 cut(s)	539
MspI	CCGG	4 cut(s)	397, 404, 476, 590
MspR9I	CCNGG	3 cut(s)	368, 476, 852
Mva1269I	GAATGC	1 cut(s)	463
MvaI	CCWGG	2 cut(s)	368, 852
MvnI	CGCG	2 cut(s)	147, 699
MwoI	GCNNNNNNNGC	9 cut(s)	379, 385, 388, 397, 421, 424, 754, 824, 1021
NciI	CCSGG	1 cut(s)	476
NdeII	GATC	4 cut(s)	153, 655, 976, 1006
NlaIII	CATG	3 cut(s)	730, 1022, 1101
NlaIV	GGNNCC	5 cut(s)	480, 511, 786, 856, 978
NmuCI	GTSAC	1 cut(s)	67
NruI	TCGCGA	1 cut(s)	147
NspI	RCATGY	1 cut(s)	730
PaeR7I	CTCGAG	1 cut(s)	98
PagI	TCATGA	1 cut(s)	1097
PceI	AGGCCT	1 cut(s)	356
PciI	ACATGT	1 cut(s)	726
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	1 cut(s)	463
PleI	GAGTC	1 cut(s)	829
PpsI	GAGTC	1 cut(s)	829
PpuMI	RGGWCCY	1 cut(s)	442
PscI	ACATGT	1 cut(s)	726
Psp5II	RGGWCCY	1 cut(s)	442
Psp6I	CCWGG	2 cut(s)	366, 850
PspFI	CCCAGC	1 cut(s)	530
PspGI	CCWGG	2 cut(s)	366, 850
PspN4I	GGNNCC	5 cut(s)	480, 511, 786, 856, 978
PspPI	GGNCC	7 cut(s)	10, 56, 118, 409, 442, 603, 773
PspPPI	RGGWCCY	1 cut(s)	442
PspXI	VCTCGAGB	1 cut(s)	98
PsuI	RGATCY	2 cut(s)	655, 976
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	1 cut(s)	721
RsaNI	GTAC	1 cut(s)	720
SaqAI	TTAA	1 cut(s)	539
Sau3AI	GATC	4 cut(s)	153, 655, 976, 1006
Sau96I	GGNCC	7 cut(s)	10, 56, 118, 409, 442, 603, 773
SchI	GAGTC	1 cut(s)	830
ScrFI	CCNGG	3 cut(s)	368, 476, 852
SduI	GDGCHC	2 cut(s)	45, 499
SexAI	ACCWGGT	1 cut(s)	850
SfaNI	GCATC	4 cut(s)	679, 805, 906, 1022
Sfr274I	CTCGAG	1 cut(s)	98
SinI	GGWCC	5 cut(s)	10, 118, 442, 603, 773
SlaI	CTCGAG	1 cut(s)	98
SmlI	CTYRAG	2 cut(s)	98, 792
SmoI	CTYRAG	2 cut(s)	98, 792
Sse9I	AATT	3 cut(s)	305, 967, 985
SseBI	AGGCCT	1 cut(s)	356
SsiI	CCGC	9 cut(s)	169, 218, 340, 380, 416, 425, 465, 482, 1075
SspMI	CTAG	2 cut(s)	110, 884
StuI	AGGCCT	1 cut(s)	356
StyD4I	CCNGG	3 cut(s)	366, 474, 850
StyI	CCWWGG	2 cut(s)	599, 769
TaaI	ACNGT	4 cut(s)	40, 494, 865, 1095
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	2 cut(s)	99, 438
TaqII	GACCGA	1 cut(s)	620
TasI	AATT	3 cut(s)	305, 967, 985
TatI	WGTACW	1 cut(s)	719
TauI	GCSGC	3 cut(s)	382, 418, 427
Tru1I	TTAA	1 cut(s)	539
Tru9I	TTAA	1 cut(s)	539
TscAI	CASTG	2 cut(s)	499, 841
TseFI	GTSAC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	3 cut(s)	130, 752, 1075
TspGWI	ACGGA	2 cut(s)	35, 64
TspRI	CASTG	2 cut(s)	499, 841
VpaK11BI	GGWCC	5 cut(s)	10, 118, 442, 603, 773
XagI	CCTNNNNNAGG	1 cut(s)	598
XapI	RAATTY	1 cut(s)	985
XceI	RCATGY	1 cut(s)	730
XcmI	CCANNNNNNNNNTGG	2 cut(s)	112, 1025
XhoI	CTCGAG	1 cut(s)	98
XspI	CTAG	2 cut(s)	110, 884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.