Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015571

Physical Location & Seq

Genomic Coordinates Forward (+)

8811716 .. 8812288

Gene Structure 573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGCGTCCCACAAGATGAGCAGCCTGCTATTGTTGCAAAGATATTCGAGGCCTTGAAAGTCGCCGTCCCCTTCCGGCCTATCTGCGTGGTCATCAAGGACATTGTCACCGTGCAAGAGCGCAGTGGTGGGGATGAAAGTTCGAACAAAGTGAGATTTGATAGCTTGGAAGTTAAGGAAGAGGAACAGGAGGAGGAGGAGTGTGTTATTTGTCTGGAGGGCCTTTCTGACTTTGGCCCCAAGAGCGTTACGCACTTACCCTGCTCACACATTTATCATGGAGATTGCATTCTGAAGTGGCAAGAGAAGACTCAGAAGAGTCGTCTCTTGTGCTCGTGTCCCGTGTGCCGATGCCCAATTCCTATTGTGGAGATGGCCGGGGAGCCGTCACAACAACTTTCGTTGTCGACATTGTCCCGGCCTCCGCAGTACCAATACATATATGAAGAAGATGTCGACACGGACCCGCTACCCGAACCCTCGTGGCGCGAGCGCGGGTTGATTGAGGTGGCTGGCTGTACTGTAACTACTCTGCTGATGATCCCGCTCTGTTTTGTAATGTGCCCTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0040029 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043433 GO:0043632 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051603 GO:0060255 GO:0060816 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1900095 GO:1901564 GO:1901565 GO:1901575 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

190

Amino Acids

21.29

Weight (kDa)

4.64

Isoelectric Point (pI)

61.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	67 - 117	2.7e-10	Ring finger domain
zf-RING_11	PF17123	67 - 97	4.8e-08	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015571)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06320 FvH4_6g41400
rosa_chinensis	RchiOBHm_Chr5g0012991
rosa_laevigata	RLG00000031975
rosa_multiflora	Rmu_sc0003892.1_g000024 Rmu_sc0005409.1_g000017 Rmu_sc0005409.1_g000018
rosa_roxburghii	Rroxscaffold_1G00062560 Rroxscaffold_1G00063580 Rroxscaffold_1G00063590
rosa_rugosa	Rorug05G0005800 Rorug05G0005900 Rorug05G0006000
rosa_samantha	Rh5BG096900 Rh5CG109100
rosa_wichuraiana	Rw5G008760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	547
AccI	GTMKAC	2 cut(s)	407, 456
AccII	CGCG	2 cut(s)	489, 495
AciI	CCGC	4 cut(s)	425, 467, 495, 545
AclWI	GGATC	1 cut(s)	535
AcoI	YGGCCR	1 cut(s)	375
AcuI	CTGAAG	1 cut(s)	314
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	2 cut(s)	431, 520
AgsI	TTSAA	1 cut(s)	58
AluBI	AGCT	1 cut(s)	165
AluI	AGCT	1 cut(s)	165
Alw21I	GWGCWC	1 cut(s)	335
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	1 cut(s)	535
AoxI	GGCC	6 cut(s)	51, 77, 220, 235, 375, 419
ApeKI	GCWGC	1 cut(s)	22
AspLEI	GCGC	3 cut(s)	123, 489, 495
AspS9I	GGNCC	3 cut(s)	220, 236, 463
AsuC2I	CCSGG	2 cut(s)	379, 418
AsuHPI	GGTGA	1 cut(s)	100
AsuII	TTCGAA	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	463
BaeGI	GKGCMC	1 cut(s)	566
BauI	CACGAG	2 cut(s)	334, 481
BbsI	GAAGAC	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	335
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	1 cut(s)	367
BceAI	ACGGC	2 cut(s)	50, 370
BcnI	CCSGG	2 cut(s)	379, 418
BcoDI	GTCTC	1 cut(s)	329
BisI	GCNGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	24
Bme1390I	CCNGG	2 cut(s)	379, 418
Bme18I	GGWCC	1 cut(s)	463
BmgT120I	GGNCC	3 cut(s)	220, 236, 463
BmiI	GGNNCC	3 cut(s)	238, 384, 465
BmrFI	CCNGG	2 cut(s)	379, 418
BmsI	GCATC	1 cut(s)	341
BpiI	GAAGAC	1 cut(s)	314
BpmI	CTGGAG	1 cut(s)	236
Bpu14I	TTCGAA	1 cut(s)	143
BpuMI	CCSGG	2 cut(s)	379, 418
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	378
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	326
BseRI	GAGGAG	3 cut(s)	206, 209, 212
BseSI	GKGCMC	1 cut(s)	566
BseXI	GCAGC	1 cut(s)	34
Bsh1236I	CGCG	2 cut(s)	489, 495
BshFI	GGCC	6 cut(s)	53, 79, 222, 237, 377, 421
BsiHKAI	GWGCWC	1 cut(s)	335
BsiSI	CCGG	3 cut(s)	76, 378, 418
BslFI	GGGAC	3 cut(s)	53, 324, 400
BsmAI	GTCTC	1 cut(s)	329
BsmBI	CGTCTC	1 cut(s)	329
BsmFI	GGGAC	3 cut(s)	53, 324, 400
BsmI	GAATGC	1 cut(s)	288
BsnI	GGCC	6 cut(s)	53, 79, 222, 237, 377, 421
Bsp119I	TTCGAA	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	335, 566
Bsp143I	GATC	1 cut(s)	540
BspACI	CCGC	4 cut(s)	425, 467, 495, 545
BspANI	GGCC	6 cut(s)	53, 79, 222, 237, 377, 421
BspCNI	CTCAG	1 cut(s)	325
BspFNI	CGCG	2 cut(s)	489, 495
BspLI	GGNNCC	3 cut(s)	238, 384, 465
BspPI	GGATC	1 cut(s)	535
BspT104I	TTCGAA	1 cut(s)	143
BsrBI	CCGCTC	1 cut(s)	547
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	1 cut(s)	540
BssNI	GRCGYC	1 cut(s)	6
BssSI	CACGAG	2 cut(s)	334, 481
Bst2BI	CACGAG	2 cut(s)	334, 481
Bst4CI	ACNGT	2 cut(s)	112, 523
Bst6I	CTCTTC	2 cut(s)	174, 311
BstACI	GRCGYC	1 cut(s)	6
BstBI	TTCGAA	1 cut(s)	143
BstC8I	GCNNGC	3 cut(s)	27, 491, 514
BstDEI	CTNAG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	139
BstFNI	CGCG	2 cut(s)	489, 495
BstHHI	GCGC	3 cut(s)	123, 489, 495
BstKTI	GATC	1 cut(s)	543
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	1 cut(s)	540
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 243
BstSCI	CCNGG	2 cut(s)	377, 416
BstSLI	GKGCMC	1 cut(s)	566
BstUI	CGCG	2 cut(s)	489, 495
BstV1I	GCAGC	1 cut(s)	34
BstV2I	GAAGAC	1 cut(s)	314
BsuRI	GGCC	6 cut(s)	53, 79, 222, 237, 377, 421
BtsCI	GGATG	1 cut(s)	139
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	130
Cac8I	GCNNGC	3 cut(s)	27, 491, 514
CfoI	GCGC	3 cut(s)	123, 489, 495
Cfr13I	GGNCC	3 cut(s)	220, 236, 463
Csp6I	GTAC	2 cut(s)	430, 519
CviAII	CATG	1 cut(s)	278
CviQI	GTAC	2 cut(s)	430, 519
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	1 cut(s)	542
DpnII	GATC	1 cut(s)	540
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	2 cut(s)	174, 311
EarI	CTCTTC	2 cut(s)	174, 311
Eco147I	AGGCCT	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	463
Eco57I	CTGAAG	1 cut(s)	314
EcoO109I	RGGNCCY	1 cut(s)	220
Esp3I	CGTCTC	1 cut(s)	329
FaeI	CATG	1 cut(s)	281
FaiI	YATR	4 cut(s)	279, 440, 442, 444
FaqI	GGGAC	3 cut(s)	53, 324, 400
FatI	CATG	1 cut(s)	277
FauI	CCCGC	3 cut(s)	474, 488, 552
FblI	GTMKAC	2 cut(s)	407, 456
Fnu4HI	GCNGC	1 cut(s)	23
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	23
GlaI	GCGC	3 cut(s)	122, 488, 494
GluI	GCNGC	1 cut(s)	23
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	6 cut(s)	53, 79, 222, 237, 377, 421
HapII	CCGG	3 cut(s)	76, 378, 418
HhaI	GCGC	3 cut(s)	123, 489, 495
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	281
Hin6I	GCGC	3 cut(s)	121, 487, 493
HinP1I	GCGC	3 cut(s)	121, 487, 493
HincII	GTYRAC	2 cut(s)	408, 457
HindII	GTYRAC	2 cut(s)	408, 457
HinfI	GANTC	2 cut(s)	310, 319
HpaII	CCGG	3 cut(s)	76, 378, 418
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	2 cut(s)	408, 457
Hpy188I	TCNGA	3 cut(s)	229, 294, 315
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	2 cut(s)	408, 457
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	2 cut(s)	112, 523
HpyCH4V	TGCA	3 cut(s)	38, 115, 288
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 243
HpyF3I	CTNAG	1 cut(s)	312
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	281
HspAI	GCGC	3 cut(s)	121, 487, 493
Kzo9I	GATC	1 cut(s)	540
LmnI	GCTCC	1 cut(s)	382
LpnPI	CCDG	8 cut(s)	39, 89, 173, 200, 274, 391, 431, 498
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	1 cut(s)	341
MaeIII	GTNAC	4 cut(s)	106, 247, 387, 523
MalI	GATC	1 cut(s)	542
MbiI	CCGCTC	1 cut(s)	547
MboI	GATC	1 cut(s)	540
MboII	GAAGA	5 cut(s)	191, 319, 328, 458, 461
MhlI	GDGCHC	2 cut(s)	335, 566
MluCI	AATT	1 cut(s)	357
MlyI	GAGTC	2 cut(s)	304, 328
MnlI	CCTC	9 cut(s)	43, 175, 184, 187, 190, 211, 432, 490, 499
MseI	TTAA	1 cut(s)	174
MspI	CCGG	3 cut(s)	76, 378, 418
MspR9I	CCNGG	2 cut(s)	379, 418
Mva1269I	GAATGC	1 cut(s)	288
MvnI	CGCG	2 cut(s)	489, 495
MwoI	GCNNNNNNNGC	2 cut(s)	35, 243
NciI	CCSGG	2 cut(s)	379, 418
NdeII	GATC	1 cut(s)	540
NlaIII	CATG	1 cut(s)	281
NlaIV	GGNNCC	3 cut(s)	238, 384, 465
NmuCI	GTSAC	2 cut(s)	106, 387
NspV	TTCGAA	1 cut(s)	143
PceI	AGGCCT	1 cut(s)	53
PctI	GAATGC	1 cut(s)	288
PflFI	GACNNNGTC	2 cut(s)	104, 412
PkrI	GCNGC	1 cut(s)	24
PleI	GAGTC	2 cut(s)	304, 327
PpsI	GAGTC	2 cut(s)	304, 327
PspN4I	GGNNCC	3 cut(s)	238, 384, 465
PspPI	GGNCC	3 cut(s)	220, 236, 463
PsyI	GACNNNGTC	2 cut(s)	104, 412
RsaI	GTAC	2 cut(s)	431, 520
RsaNI	GTAC	2 cut(s)	430, 519
SalI	GTCGAC	2 cut(s)	406, 455
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	23
Sau3AI	GATC	1 cut(s)	540
Sau96I	GGNCC	3 cut(s)	220, 236, 463
SchI	GAGTC	2 cut(s)	304, 328
ScrFI	CCNGG	2 cut(s)	379, 418
SduI	GDGCHC	2 cut(s)	335, 566
SetI	ASST	2 cut(s)	167, 510
SfaNI	GCATC	1 cut(s)	341
SfuI	TTCGAA	1 cut(s)	143
SinI	GGWCC	1 cut(s)	463
Sse9I	AATT	1 cut(s)	357
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	4 cut(s)	425, 467, 495, 545
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	2 cut(s)	377, 416
TaaI	ACNGT	2 cut(s)	112, 523
TaqI	TCGA	4 cut(s)	48, 143, 407, 456
TasI	AATT	1 cut(s)	357
TatI	WGTACW	1 cut(s)	518
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	2 cut(s)	106, 387
TseI	GCWGC	1 cut(s)	22
Tsp45I	GTSAC	2 cut(s)	106, 387
TspDTI	ATGAA	2 cut(s)	150, 459
TspGWI	ACGGA	1 cut(s)	476
TspRI	CASTG	1 cut(s)	130
Tth111I	GACNNNGTC	2 cut(s)	104, 412
VpaK11BI	GGWCC	1 cut(s)	463
XmiI	GTMKAC	2 cut(s)	407, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.