RchiOBHm_Chr5g0023931

Metal tolerance protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
18141328 .. 18144708
3381 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1209 bp
ATGGAGAAGAGTCCGCACTCGAATTCCGGTGGAGACTGCCGGAGGGAACCGCTTCTCGAGTCGGAGGACGGCGTCGCTTCAAGCAGGTCTTGGAGGCTTAACATCAATGAGTTTCGCATTCCGGAACAGAACGAGGGTGAAGGTGAAAAAGGGTGTCGACCCTTCAGTAATATCCGTCGTCTATGCACACCCAGGAAAAAGTTCAGAGTTGAGCAATATTACAAGCAACAAGGAAGGCTTCTTGAAGGGTACAGTGAGATGGAGACCATGGCTGAAGAGGGTTGGTTGCCAGGAAGTCTCACAGAGGATGAAATGAAGCAGCTAGCTAAGAGTGAGAGGATGGCAGTTCATATATCAAATGTAGCTAATTTGCTGCTCTTTGCTGCAAAAGTTTATGCTTCAATCATGAGCAGATCACTGGCAGTTATTGCCTCTACCTTGGATTCCCTCTTGGATCTCTTGTCTGGCTTTATTTTGTGGTTCACTGCCAATGCCATGAGAAAGCCAAACCGCTTTCATTATCCTATTGGAAAGAAACGTATGCAACCAGTGGGTATCATTGTCTTTGCATCTGTTATGGCAACTCTTGGACTGCAAATATTGCTCGAGTCTGCTCGGGAACTCGTCTCAAAGTCCCCAGCAGAAATGGATGATGGACAGGAGAAGTGGATGATTGCCATCATGGTCTCGGTCACAGTAGTGAAGTTTCTGCTCATGGTCTACTGTCGTAGATTTAAAAATGAAATTGTACAGGCCTATGCACAAGACCACTTCTTTGATGTCATTACTAATTCAGTTGGTCTAGCAGCAGCAGTCCTAGCCCACCGGTATAAATGGTGGATTGATCCTACTGGTGCTATTGTCATTGCACTTTACACCATCAATACATGGGCGAGGACAGTCTTGGAGAATGTGCGTTCGCTAATCGGAAGAACAGCTCCACCTGAGTTTTTGGCCAAGTTAACCTATCTGATATGGAACCACCATGAGGAGATCAAGCACATTGATACAGTGAGAGCATACACATTTGGTAACTGTTACTTTGTGGAGGTCGACATAGTCTTGCCAGAAGACATGCTTCTGAACAAAGCACATAACATTGGCGAGACACTCCAAGAGAAGCTCGAGCAACTTGCTGAAGTCGAACGGGCCTTTGTGCATATCGATTTTGAGTTTAGTCACCGGCCGGAACACAAAACTAGCGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

402

Amino Acids

45.99

Weight (kDa)

6.48

Isoelectric Point (pI)

50.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_efflux PF01545 117 - 309 1.2e-33 Cation efflux transmembrane domain
ZT_dimer PF16916 316 - 389 5.6e-08 Cation efflux protein, cytoplasmic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 75
AccI GTMKAC 3 cut(s) 157, 720, 1053
AccIII TCCGGA 1 cut(s) 121
AciI CCGC 3 cut(s) 14, 50, 511
AclWI GGATC 2 cut(s) 462, 839
AcoI YGGCCR 2 cut(s) 954, 1184
AcsI RAATTY 1 cut(s) 22
AcuI CTGAAG 3 cut(s) 148, 294, 1158
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 2 cut(s) 251, 750
AfiI CCNNNNNNNGG 1 cut(s) 988
AgeI ACCGGT 1 cut(s) 825
AgsI TTSAA 3 cut(s) 81, 245, 402
AjnI CCWGG 2 cut(s) 191, 289
AleI CACNNNNGTG 1 cut(s) 698
AluBI AGCT 5 cut(s) 322, 326, 365, 938, 1123
AluI AGCT 5 cut(s) 322, 326, 365, 938, 1123
Alw26I GTCTC 6 cut(s) 27, 257, 302, 631, 691, 1100
AlwI GGATC 2 cut(s) 462, 839
Ama87I CYCGRG 4 cut(s) 56, 605, 615, 1124
Aor13HI TCCGGA 1 cut(s) 121
AoxI GGCC 4 cut(s) 753, 954, 1149, 1184
ApeKI GCWGC 5 cut(s) 319, 373, 383, 806, 809
ApoI RAATTY 1 cut(s) 22
ArsI GACNNNNNNTTYG 2 cut(s) 758, 790
AsiGI ACCGGT 1 cut(s) 825
Asp700I GAANNNNTTC 2 cut(s) 51, 200
AspS9I GGNCC 1 cut(s) 1149
AsuHPI GGTGA 3 cut(s) 149, 155, 1172
AsuNHI GCTAGC 1 cut(s) 322
AvaI CYCGRG 4 cut(s) 56, 605, 615, 1124
BalI TGGCCA 1 cut(s) 956
BbsI GAAGAC 1 cut(s) 1077
BbvI GCAGC 5 cut(s) 331, 360, 370, 818, 821
BccI CCATC 5 cut(s) 253, 334, 647, 686, 887
BceAI ACGGC 1 cut(s) 85
BcgI CGANNNNNNTGC 2 cut(s) 1115, 1149
BciT130I CCWGG 2 cut(s) 193, 291
BcoDI GTCTC 6 cut(s) 27, 257, 302, 631, 691, 1100
BfaI CTAG 4 cut(s) 323, 803, 818, 1200
BfuAI ACCTGC 1 cut(s) 75
BisI GCNGC 5 cut(s) 320, 374, 384, 807, 810
BlsI GCNGC 5 cut(s) 321, 375, 385, 808, 811
Bme1390I CCNGG 2 cut(s) 193, 291
BmeT110I CYCGRG 4 cut(s) 56, 605, 615, 1124
BmgT120I GGNCC 1 cut(s) 1149
BmiI GGNNCC 2 cut(s) 48, 980
BmrFI CCNGG 2 cut(s) 193, 291
BmsI GCATC 1 cut(s) 578
BmtI GCTAGC 1 cut(s) 326
BpiI GAAGAC 1 cut(s) 1077
Bsa29I ATCGAT 1 cut(s) 1164
BsaBI GATNNNNATC 1 cut(s) 677
BsaHI GRCGYC 1 cut(s) 72
BsaI GGTCTC 2 cut(s) 257, 691
BsaJI CCNNGG 3 cut(s) 191, 267, 438
BsaWI WCCGGW 3 cut(s) 26, 121, 825
Bsc4I CCNNNNNNNGG 1 cut(s) 988
Bse118I RCCGGY 2 cut(s) 825, 1182
Bse1I ACTGG 3 cut(s) 423, 548, 856
Bse3DI GCAATG 1 cut(s) 864
Bse8I GATNNNNATC 1 cut(s) 677
BseAI TCCGGA 1 cut(s) 121
BseBI CCWGG 2 cut(s) 193, 291
BseCI ATCGAT 1 cut(s) 1164
BseDI CCNNGG 3 cut(s) 191, 267, 438
BseGI GGATG 4 cut(s) 313, 345, 655, 675
BseJI GATNNNNATC 1 cut(s) 677
BseLI CCNNNNNNNGG 1 cut(s) 988
BseMI GCAATG 1 cut(s) 864
BseMII CTCAG 1 cut(s) 936
BseNI ACTGG 3 cut(s) 423, 548, 856
BseRI GAGGAG 1 cut(s) 1004
BseX3I CGGCCG 1 cut(s) 1184
BseXI GCAGC 5 cut(s) 331, 360, 370, 818, 821
BseYI CCCAGC 1 cut(s) 637
Bsh1285I CGRYCG 1 cut(s) 1187
BshFI GGCC 4 cut(s) 755, 956, 1151, 1186
BshTI ACCGGT 1 cut(s) 825
BshVI ATCGAT 1 cut(s) 1164
BsiEI CGRYCG 1 cut(s) 1187
BsiHKCI CYCGRG 4 cut(s) 56, 605, 615, 1124
BsiSI CCGG 6 cut(s) 27, 40, 122, 826, 1183, 1187
BslFI GGGAC 1 cut(s) 619
BslI CCNNNNNNNGG 1 cut(s) 988
BsmAI GTCTC 6 cut(s) 27, 257, 302, 631, 691, 1100
BsmBI CGTCTC 1 cut(s) 631
BsmFI GGGAC 1 cut(s) 619
BsmI GAATGC 1 cut(s) 117
BsnI GGCC 4 cut(s) 755, 956, 1151, 1186
Bso31I GGTCTC 2 cut(s) 257, 691
BsoBI CYCGRG 4 cut(s) 56, 605, 615, 1124
Bsp13I TCCGGA 1 cut(s) 121
Bsp1407I TGTACA 1 cut(s) 748
Bsp143I GATC 4 cut(s) 413, 454, 844, 993
Bsp19I CCATGG 1 cut(s) 267
BspACI CCGC 3 cut(s) 14, 50, 511
BspANI GGCC 4 cut(s) 755, 956, 1151, 1186
BspCNI CTCAG 1 cut(s) 937
BspDI ATCGAT 1 cut(s) 1164
BspEI TCCGGA 1 cut(s) 121
BspHI TCATGA 1 cut(s) 405
BspLI GGNNCC 2 cut(s) 48, 980
BspMI ACCTGC 1 cut(s) 75
BspOI GCTAGC 1 cut(s) 326
BspPI GGATC 2 cut(s) 462, 839
BspTNI GGTCTC 2 cut(s) 257, 691
BsrDI GCAATG 1 cut(s) 864
BsrFI RCCGGY 2 cut(s) 825, 1182
BsrGI TGTACA 1 cut(s) 748
BsrI ACTGG 3 cut(s) 423, 548, 856
BssAI RCCGGY 2 cut(s) 825, 1182
BssECI CCNNGG 3 cut(s) 191, 267, 438
BssMI GATC 4 cut(s) 413, 454, 844, 993
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 2 cut(s) 267, 438
Bst2UI CCWGG 2 cut(s) 193, 291
Bst4CI ACNGT 6 cut(s) 254, 697, 725, 901, 1012, 1037
Bst6I CTCTTC 2 cut(s) 2, 270
BstACI GRCGYC 1 cut(s) 72
BstAPI GCANNNNNTGC 2 cut(s) 428, 601
BstAUI TGTACA 1 cut(s) 748
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 2 cut(s) 327, 945
BstDSI CCRYGG 1 cut(s) 267
BstF5I GGATG 4 cut(s) 313, 345, 655, 675
BstKTI GATC 4 cut(s) 416, 457, 847, 996
BstMAI GTCTC 6 cut(s) 27, 257, 302, 631, 691, 1100
BstMBI GATC 4 cut(s) 413, 454, 844, 993
BstMCI CGRYCG 1 cut(s) 1187
BstMWI GCNNNNNNNGC 3 cut(s) 428, 601, 818
BstNI CCWGG 2 cut(s) 193, 291
BstNSI RCATGY 1 cut(s) 1078
BstSCI CCNGG 2 cut(s) 191, 289
BstV1I GCAGC 5 cut(s) 331, 360, 370, 818, 821
BstV2I GAAGAC 1 cut(s) 1077
BstX2I RGATCY 1 cut(s) 454
BstYI RGATCY 1 cut(s) 454
BstZI CGGCCG 1 cut(s) 1184
Bsu15I ATCGAT 1 cut(s) 1164
BsuRI GGCC 4 cut(s) 755, 956, 1151, 1186
BsuTUI ATCGAT 1 cut(s) 1164
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 4 cut(s) 313, 345, 655, 675
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 5 cut(s) 259, 416, 483, 555, 1017
BveI ACCTGC 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 324
CciI TCATGA 1 cut(s) 405
Cfr10I RCCGGY 2 cut(s) 825, 1182
Cfr13I GGNCC 1 cut(s) 1149
ClaI ATCGAT 1 cut(s) 1164
CseI GACGC 1 cut(s) 61
Csp6I GTAC 2 cut(s) 250, 749
CspAI ACCGGT 1 cut(s) 825
CviAII CATG 8 cut(s) 268, 406, 496, 682, 715, 888, 986, 1075
CviQI GTAC 2 cut(s) 250, 749
DdeI CTNAG 2 cut(s) 327, 945
DpnI GATC 4 cut(s) 415, 456, 846, 995
DpnII GATC 4 cut(s) 413, 454, 844, 993
DraI TTTAAA 1 cut(s) 736
EaeI YGGCCR 2 cut(s) 954, 1184
EagI CGGCCG 1 cut(s) 1184
Eam1104I CTCTTC 2 cut(s) 2, 270
EarI CTCTTC 2 cut(s) 2, 270
EclXI CGGCCG 1 cut(s) 1184
Eco130I CCWWGG 2 cut(s) 267, 438
Eco147I AGGCCT 1 cut(s) 755
Eco31I GGTCTC 2 cut(s) 257, 691
Eco52I CGGCCG 1 cut(s) 1184
Eco57I CTGAAG 3 cut(s) 148, 294, 1158
Eco88I CYCGRG 4 cut(s) 56, 605, 615, 1124
EcoRI GAATTC 1 cut(s) 22
EcoRII CCWGG 2 cut(s) 191, 289
EcoT14I CCWWGG 2 cut(s) 267, 438
ErhI CCWWGG 2 cut(s) 267, 438
Esp3I CGTCTC 1 cut(s) 631
FaeI CATG 8 cut(s) 271, 409, 499, 685, 718, 891, 989, 1078
FalI AAGNNNNNCTT 6 cut(s) 73, 105, 222, 254, 1062, 1094
FaqI GGGAC 1 cut(s) 619
FatI CATG 8 cut(s) 267, 405, 495, 681, 714, 887, 985, 1074
FblI GTMKAC 3 cut(s) 157, 720, 1053
Fnu4HI GCNGC 5 cut(s) 320, 374, 384, 807, 810
FokI GGATG 4 cut(s) 320, 352, 662, 682
Fsp4HI GCNGC 5 cut(s) 320, 374, 384, 807, 810
FspBI CTAG 4 cut(s) 323, 803, 818, 1200
GluI GCNGC 5 cut(s) 320, 374, 384, 807, 810
GsaI CCCAGC 1 cut(s) 641
HaeIII GGCC 4 cut(s) 755, 956, 1151, 1186
HapII CCGG 6 cut(s) 27, 40, 122, 826, 1183, 1187
HgaI GACGC 1 cut(s) 61
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 8 cut(s) 271, 409, 499, 685, 718, 891, 989, 1078
HincII GTYRAC 3 cut(s) 158, 963, 1054
HindII GTYRAC 3 cut(s) 158, 963, 1054
HinfI GANTC 4 cut(s) 10, 59, 443, 608
HpaI GTTAAC 1 cut(s) 963
HpaII CCGG 6 cut(s) 27, 40, 122, 826, 1183, 1187
HphI GGTGA 3 cut(s) 149, 155, 1172
Hpy166II GTNNAC 5 cut(s) 158, 483, 721, 963, 1054
Hpy188I TCNGA 5 cut(s) 64, 206, 929, 972, 1083
Hpy188III TCNNGA 5 cut(s) 56, 122, 242, 406, 617
Hpy8I GTNNAC 5 cut(s) 158, 483, 721, 963, 1054
Hpy99I CGWCG 2 cut(s) 77, 180
HpyAV CCTTC 4 cut(s) 134, 172, 228, 239
HpyCH4III ACNGT 6 cut(s) 254, 697, 725, 901, 1012, 1037
HpyCH4IV ACGT 1 cut(s) 538
HpyCH4V TGCA 8 cut(s) 186, 386, 544, 569, 595, 761, 869, 1159
HpyF10VI GCNNNNNNNGC 3 cut(s) 428, 601, 818
HpyF3I CTNAG 2 cut(s) 327, 945
HpySE526I ACGT 1 cut(s) 538
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 8 cut(s) 271, 409, 499, 685, 718, 891, 989, 1078
Kpn2I TCCGGA 1 cut(s) 121
KspAI GTTAAC 1 cut(s) 963
Kzo9I GATC 4 cut(s) 413, 454, 844, 993
LmnI GCTCC 1 cut(s) 943
Lsp1109I GCAGC 5 cut(s) 331, 360, 370, 818, 821
LweI GCATC 1 cut(s) 578
MaeI CTAG 4 cut(s) 323, 803, 818, 1200
MaeII ACGT 1 cut(s) 538
MaeIII GTNAC 4 cut(s) 691, 1031, 1037, 1178
MalI GATC 4 cut(s) 415, 456, 846, 995
MboI GATC 4 cut(s) 413, 454, 844, 993
MboII GAAGA 4 cut(s) 19, 287, 942, 1082
MflI RGATCY 1 cut(s) 454
MlsI TGGCCA 1 cut(s) 956
MluCI AATT 4 cut(s) 22, 367, 744, 790
MluNI TGGCCA 1 cut(s) 956
MlyI GAGTC 3 cut(s) 19, 68, 617
MmeI TCCRAC 1 cut(s) 42
Mox20I TGGCCA 1 cut(s) 956
MroI TCCGGA 1 cut(s) 121
MroXI GAANNNNTTC 2 cut(s) 51, 200
MscI TGGCCA 1 cut(s) 956
MseI TTAA 3 cut(s) 99, 735, 962
MslI CAYNNNNRTG 1 cut(s) 698
Msp20I TGGCCA 1 cut(s) 956
MspI CCGG 6 cut(s) 27, 40, 122, 826, 1183, 1187
MspR9I CCNGG 2 cut(s) 193, 291
Mva1269I GAATGC 1 cut(s) 117
MvaI CCWGG 2 cut(s) 193, 291
MwoI GCNNNNNNNGC 3 cut(s) 428, 601, 818
NcoI CCATGG 1 cut(s) 267
NdeII GATC 4 cut(s) 413, 454, 844, 993
NheI GCTAGC 1 cut(s) 322
NlaIII CATG 8 cut(s) 271, 409, 499, 685, 718, 891, 989, 1078
NlaIV GGNNCC 2 cut(s) 48, 980
NmuCI GTSAC 2 cut(s) 691, 1178
NspI RCATGY 1 cut(s) 1078
OliI CACNNNNGTG 1 cut(s) 698
PaeR7I CTCGAG 3 cut(s) 56, 605, 1124
PagI TCATGA 1 cut(s) 405
PceI AGGCCT 1 cut(s) 755
PctI GAATGC 1 cut(s) 117
PdmI GAANNNNTTC 2 cut(s) 51, 200
PfeI GAWTC 1 cut(s) 443
PflFI GACNNNGTC 2 cut(s) 71, 1058
PinAI ACCGGT 1 cut(s) 825
PkrI GCNGC 5 cut(s) 321, 375, 385, 808, 811
PleI GAGTC 3 cut(s) 18, 67, 616
PpsI GAGTC 3 cut(s) 18, 67, 616
Psp6I CCWGG 2 cut(s) 191, 289
PspFI CCCAGC 1 cut(s) 637
PspGI CCWGG 2 cut(s) 191, 289
PspN4I GGNNCC 2 cut(s) 48, 980
PspPI GGNCC 1 cut(s) 1149
PspXI VCTCGAGB 2 cut(s) 605, 1124
PsuI RGATCY 1 cut(s) 454
PsyI GACNNNGTC 2 cut(s) 71, 1058
RsaI GTAC 2 cut(s) 251, 750
RsaNI GTAC 2 cut(s) 250, 749
RseI CAYNNNNRTG 1 cut(s) 698
SalI GTCGAC 2 cut(s) 156, 1052
SaqAI TTAA 3 cut(s) 99, 735, 962
SatI GCNGC 5 cut(s) 320, 374, 384, 807, 810
Sau3AI GATC 4 cut(s) 413, 454, 844, 993
Sau96I GGNCC 1 cut(s) 1149
SchI GAGTC 3 cut(s) 19, 68, 617
ScrFI CCNGG 2 cut(s) 193, 291
SfaNI GCATC 1 cut(s) 578
Sfr274I CTCGAG 3 cut(s) 56, 605, 1124
SlaI CTCGAG 3 cut(s) 56, 605, 1124
SmiMI CAYNNNNRTG 1 cut(s) 698
SmlI CTYRAG 3 cut(s) 56, 605, 1124
SmoI CTYRAG 3 cut(s) 56, 605, 1124
Sse9I AATT 4 cut(s) 22, 367, 744, 790
SseBI AGGCCT 1 cut(s) 755
SsiI CCGC 3 cut(s) 14, 50, 511
SspI AATATT 2 cut(s) 218, 600
SspMI CTAG 4 cut(s) 323, 803, 818, 1200
StuI AGGCCT 1 cut(s) 755
StyD4I CCNGG 2 cut(s) 191, 289
StyI CCWWGG 2 cut(s) 267, 438
TaaI ACNGT 6 cut(s) 254, 697, 725, 901, 1012, 1037
TaiI ACGT 1 cut(s) 541
TaqI TCGA 8 cut(s) 20, 57, 157, 606, 1053, 1125, 1143, 1164
TaqII GACCGA 1 cut(s) 679
TasI AATT 4 cut(s) 22, 367, 744, 790
TatI WGTACW 1 cut(s) 748
TfiI GAWTC 1 cut(s) 443
Tru1I TTAA 3 cut(s) 99, 735, 962
Tru9I TTAA 3 cut(s) 99, 735, 962
TscAI CASTG 5 cut(s) 259, 423, 490, 555, 1017
TseFI GTSAC 2 cut(s) 691, 1178
TseI GCWGC 5 cut(s) 319, 373, 383, 806, 809
Tsp45I GTSAC 2 cut(s) 691, 1178
TspDTI ATGAA 5 cut(s) 324, 329, 338, 506, 756
TspGWI ACGGA 1 cut(s) 164
TspRI CASTG 5 cut(s) 259, 423, 490, 555, 1017
Tth111I GACNNNGTC 2 cut(s) 71, 1058
XapI RAATTY 1 cut(s) 22
XceI RCATGY 1 cut(s) 1078
XhoI CTCGAG 3 cut(s) 56, 605, 1124
XmiI GTMKAC 3 cut(s) 157, 720, 1053
XmnI GAANNNNTTC 2 cut(s) 51, 200
XspI CTAG 4 cut(s) 323, 803, 818, 1200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.