Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015759

Physical Location & Seq

Genomic Coordinates Reverse (-)

20004509 .. 20005163

Gene Structure 655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGATATCAGGGTCAAATTCCAATTCGGGGCTAGGGTTTGGGGTGGAGTCAAATTCTCTGGGTTCCAGCTCTAAATTCAGTGACTTTCTAGCTCCACAAGGGCTTCGAGTTGTTGGGTTGGAGTCCGATTCAGATTTGGATAAAAATGAATTCAAAAGTGGAGGTAGAAGAGCGGCGAAGGTTACCAGGAGGATGATGAGGTTCTCAGTGACGACGCCGTTTCGAACTTCGAGCAGGACGAGGAGGTTCTCAGTGACGAGGCCGGTGAGCCCAATTTCTTGCCTGACCTCAAGCTCTTCATCGAAAACCTTCCCCTCACTGTCGCTAACTGAGCTCTTCGAAGGTGCTGGAAATGTTGAGATGGTTGAGGTGATATATGACAAGATGACTGGGAGAAGAAGGGGATTCGGGTTTGTGACCATGTCGAGTGCTCAGGAAGTAGAAGCAGCTGCTCGACAGTTCAATGGCTATGTGAAAAAAATTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008187 GO:0008266 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009894 GO:0009895 GO:0009941 GO:0010033 GO:0010319 GO:0010468 GO:0010605 GO:0010608 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043489 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055035 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902369

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

162

Amino Acids

17.61

Weight (kDa)

10.32

Isoelectric Point (pI)

56.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	109 - 157	4.6e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015759)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0026031 RchiOBHm_Chr7g0203031
rosa_multiflora	Rmu_co8054850.1_g000001 Rmu_sc0006847.1_g000017
rosa_roxburghii	Rroxscaffold_1G00038260
rosa_rugosa	Rorug02G0443100
rosa_samantha	Rh1BG340600 Rh1CG353700 Rh1CG388500 Rh1DG371500 Rh1DG405300 Rh5BG221800 Rh5CG198900 Rh5DG181400 Rh7AG202600 Rh7AG275400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	173
AciI	CCGC	1 cut(s)	173
AcsI	RAATTY	4 cut(s)	16, 52, 74, 149
AcyI	GRCGYC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	2 cut(s)	154, 463
AjnI	CCWGG	1 cut(s)	185
AluBI	AGCT	5 cut(s)	69, 92, 294, 334, 449
AluI	AGCT	5 cut(s)	69, 92, 294, 334, 449
Alw21I	GWGCWC	2 cut(s)	336, 433
AoxI	GGCC	1 cut(s)	260
ApeKI	GCWGC	2 cut(s)	446, 449
ApoI	RAATTY	4 cut(s)	16, 52, 74, 149
Asp700I	GAANNNNTTC	1 cut(s)	308
AsuHPI	GGTGA	2 cut(s)	277, 382
AsuII	TTCGAA	2 cut(s)	223, 339
BanII	GRGCYC	2 cut(s)	272, 336
Bbv12I	GWGCWC	2 cut(s)	336, 433
BbvI	GCAGC	2 cut(s)	436, 458
BccI	CCATC	1 cut(s)	355
BceAI	ACGGC	1 cut(s)	202
BciT130I	CCWGG	1 cut(s)	187
BfaI	CTAG	2 cut(s)	32, 89
BisI	GCNGC	3 cut(s)	174, 447, 450
BlsI	GCNGC	3 cut(s)	175, 448, 451
Bme1390I	CCNGG	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	187
BmrI	ACTGGG	1 cut(s)	399
BmuI	ACTGGG	1 cut(s)	399
Bpu10I	CCTNAGC	1 cut(s)	432
Bpu14I	TTCGAA	2 cut(s)	223, 339
BpuEI	CTTGAG	1 cut(s)	274
BsaHI	GRCGYC	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse118I	RCCGGY	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	394
BseBI	CCWGG	1 cut(s)	187
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	4 cut(s)	219, 264, 321, 446
BseNI	ACTGG	1 cut(s)	394
BseRI	GAGGAG	1 cut(s)	256
BseXI	GCAGC	2 cut(s)	436, 458
BshFI	GGCC	1 cut(s)	262
BsiHKAI	GWGCWC	2 cut(s)	336, 433
BsiSI	CCGG	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	27
BsnI	GGCC	1 cut(s)	262
Bsp119I	TTCGAA	2 cut(s)	223, 339
Bsp1286I	GDGCHC	3 cut(s)	272, 336, 433
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	1 cut(s)	262
BspCNI	CTCAG	4 cut(s)	218, 263, 322, 445
BspLI	GGNNCC	1 cut(s)	64
BspQI	GCTCTTC	3 cut(s)	163, 301, 341
BspT104I	TTCGAA	2 cut(s)	223, 339
BsrBI	CCGCTC	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	394
BssAI	RCCGGY	1 cut(s)	262
BssNI	GRCGYC	1 cut(s)	215
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	2 cut(s)	321, 459
Bst6I	CTCTTC	3 cut(s)	163, 301, 341
BstACI	GRCGYC	1 cut(s)	215
BstBI	TTCGAA	2 cut(s)	223, 339
BstDEI	CTNAG	4 cut(s)	205, 250, 330, 432
BstEII	GGTNACC	1 cut(s)	181
BstF5I	GGATG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	1 cut(s)	331
BstNI	CCWGG	1 cut(s)	187
BstPI	GGTNACC	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	185
BstV1I	GCAGC	2 cut(s)	436, 458
BsuRI	GGCC	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	198
BtsIMutI	CAGTG	4 cut(s)	85, 213, 258, 317
Cfr10I	RCCGGY	1 cut(s)	262
CseI	GACGC	1 cut(s)	223
CviAII	CATG	1 cut(s)	421
DdeI	CTNAG	4 cut(s)	205, 250, 330, 432
Eam1104I	CTCTTC	3 cut(s)	163, 301, 341
EarI	CTCTTC	3 cut(s)	163, 301, 341
Ecl136II	GAGCTC	1 cut(s)	334
Eco24I	GRGCYC	2 cut(s)	272, 336
Eco32I	GATATC	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	334
Eco91I	GGTNACC	1 cut(s)	181
EcoICRI	GAGCTC	1 cut(s)	334
EcoO65I	GGTNACC	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	185
EcoRV	GATATC	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	272, 336
FaeI	CATG	1 cut(s)	424
FaiI	YATR	4 cut(s)	376, 378, 422, 471
FatI	CATG	1 cut(s)	420
Fnu4HI	GCNGC	3 cut(s)	174, 447, 450
FokI	GGATG	1 cut(s)	205
FriOI	GRGCYC	2 cut(s)	272, 336
Fsp4HI	GCNGC	3 cut(s)	174, 447, 450
FspBI	CTAG	2 cut(s)	32, 89
GluI	GCNGC	3 cut(s)	174, 447, 450
HaeIII	GGCC	1 cut(s)	262
HapII	CCGG	1 cut(s)	263
HgaI	GACGC	1 cut(s)	223
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	1 cut(s)	424
HinfI	GANTC	4 cut(s)	47, 122, 128, 405
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	2 cut(s)	277, 382
Hpy188I	TCNGA	2 cut(s)	127, 133
Hpy188III	TCNNGA	1 cut(s)	434
Hpy99I	CGWCG	1 cut(s)	217
HpyAV	CCTTC	4 cut(s)	172, 319, 335, 393
HpyCH4III	ACNGT	2 cut(s)	321, 459
HpyF10VI	GCNNNNNNNGC	1 cut(s)	331
HpyF3I	CTNAG	4 cut(s)	205, 250, 330, 432
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	1 cut(s)	424
LguI	GCTCTTC	3 cut(s)	163, 301, 341
LmnI	GCTCC	1 cut(s)	97
Lsp1109I	GCAGC	2 cut(s)	436, 458
MaeI	CTAG	2 cut(s)	32, 89
MaeIII	GTNAC	5 cut(s)	80, 181, 208, 253, 415
MbiI	CCGCTC	1 cut(s)	173
MboII	GAAGA	4 cut(s)	180, 288, 328, 408
MhlI	GDGCHC	3 cut(s)	272, 336, 433
MluCI	AATT	7 cut(s)	16, 22, 52, 74, 149, 273, 480
MlyI	GAGTC	2 cut(s)	56, 131
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	9 cut(s)	155, 183, 192, 234, 237, 252, 298, 325, 361
MroXI	GAANNNNTTC	1 cut(s)	308
MspA1I	CMGCKG	1 cut(s)	449
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	1 cut(s)	331
NlaIII	CATG	1 cut(s)	424
NlaIV	GGNNCC	1 cut(s)	64
NmuCI	GTSAC	4 cut(s)	80, 208, 253, 415
NspV	TTCGAA	2 cut(s)	223, 339
PciSI	GCTCTTC	3 cut(s)	163, 301, 341
PcsI	WCGNNNNNNNCGW	1 cut(s)	236
PdmI	GAANNNNTTC	1 cut(s)	308
PfeI	GAWTC	2 cut(s)	128, 405
PflFI	GACNNNGTC	1 cut(s)	421
PkrI	GCNGC	3 cut(s)	175, 448, 451
PleI	GAGTC	2 cut(s)	55, 130
PpsI	GAGTC	2 cut(s)	55, 130
Psp124BI	GAGCTC	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	185
PspEI	GGTNACC	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	64
PsyI	GACNNNGTC	1 cut(s)	421
PvuII	CAGCTG	1 cut(s)	449
SacI	GAGCTC	1 cut(s)	336
SapI	GCTCTTC	3 cut(s)	163, 301, 341
SatI	GCNGC	3 cut(s)	174, 447, 450
SchI	GAGTC	2 cut(s)	56, 131
ScrFI	CCNGG	1 cut(s)	187
SduI	GDGCHC	3 cut(s)	272, 336, 433
SfuI	TTCGAA	2 cut(s)	223, 339
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
Sse9I	AATT	7 cut(s)	16, 22, 52, 74, 149, 273, 480
SsiI	CCGC	1 cut(s)	173
SspMI	CTAG	2 cut(s)	32, 89
SstI	GAGCTC	1 cut(s)	336
StyD4I	CCNGG	1 cut(s)	185
TaaI	ACNGT	2 cut(s)	321, 459
TaqI	TCGA	7 cut(s)	106, 223, 230, 302, 339, 425, 454
TasI	AATT	7 cut(s)	16, 22, 52, 74, 149, 273, 480
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	2 cut(s)	128, 405
TscAI	CASTG	4 cut(s)	85, 213, 258, 324
TseFI	GTSAC	4 cut(s)	80, 208, 253, 415
TseI	GCWGC	2 cut(s)	446, 449
Tsp45I	GTSAC	4 cut(s)	80, 208, 253, 415
TspDTI	ATGAA	2 cut(s)	162, 288
TspRI	CASTG	4 cut(s)	85, 213, 258, 324
Tth111I	GACNNNGTC	1 cut(s)	421
XapI	RAATTY	4 cut(s)	16, 52, 74, 149
XmnI	GAANNNNTTC	1 cut(s)	308
XspI	CTAG	2 cut(s)	32, 89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.