Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0015759

Physical Location & Seq

Genomic Coordinates Forward (+)

28752366 .. 28752996

Gene Structure 631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG275400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGATATTGGGGCCAAATTCCAATTCGGGGGTAGGGATTGGGGTGGAGTCAAATTCTCAGGGCTCCGGCTCTGAATTCGGTGACTTTGTAGCTCCACAAGGGCTTCGGGATGAGGAGGTTCTCAGCGACGATGCCGGCAAGCCCAATTTCTCGCTTGACCTCAAGCTGTTCGTCAGATTCACTATCGATAATGCTCAGCTAGTTGAGCTCTTCGAAGGTGCTGGAAATATTGAGATGGTTGAGGTGATATATGACAAGTCGACTGGGAGAAGCAGGGGATTCGGGTTTGTGACCATGTCGAGTGCTCAGGAAGTAGAAGCAGCTGCTCGACAGTTCGATGGCTATATGAGTCACCATTTTGTGTCTATGATATGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008187 GO:0008266 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009894 GO:0009895 GO:0009941 GO:0010033 GO:0010319 GO:0010468 GO:0010605 GO:0010608 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043489 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055035 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902369

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

126

Amino Acids

13.56

Weight (kDa)

4.38

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	61 - 116	8e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015759)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0026031 RchiOBHm_Chr7g0203031
rosa_multiflora	Rmu_co8054850.1_g000001 Rmu_sc0006847.1_g000017
rosa_roxburghii	Rroxscaffold_1G00038260
rosa_rugosa	Rorug02G0443100
rosa_samantha	Rh1BG340600 Rh1CG353700 Rh1CG388500 Rh1DG371500 Rh1DG405300 Rh5BG221800 Rh5CG198900 Rh5DG181400 Rh7AG202600 Rh7AG275400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	260
AcsI	RAATTY	3 cut(s)	16, 52, 74
AfiI	CCNNNNNNNGG	1 cut(s)	27
AjuI	GAANNNNNNNTTGG	2 cut(s)	7, 39
AluBI	AGCT	5 cut(s)	92, 166, 199, 208, 323
AluI	AGCT	5 cut(s)	92, 166, 199, 208, 323
Alw21I	GWGCWC	2 cut(s)	210, 307
AoxI	GGCC	1 cut(s)	11
ApeKI	GCWGC	2 cut(s)	320, 323
ApoI	RAATTY	3 cut(s)	16, 52, 74
AspS9I	GGNCC	1 cut(s)	11
AsuHPI	GGTGA	3 cut(s)	92, 256, 344
AsuII	TTCGAA	1 cut(s)	213
BanII	GRGCYC	2 cut(s)	65, 210
Bbv12I	GWGCWC	2 cut(s)	210, 307
BbvI	GCAGC	2 cut(s)	310, 332
BccI	CCATC	2 cut(s)	229, 332
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BfaI	CTAG	1 cut(s)	200
BisI	GCNGC	2 cut(s)	321, 324
BlpI	GCTNAGC	1 cut(s)	195
BlsI	GCNGC	2 cut(s)	322, 325
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	2 cut(s)	12, 64
BmrI	ACTGGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	121
BmuI	ACTGGG	1 cut(s)	273
Bpu10I	CCTNAGC	1 cut(s)	306
Bpu1102I	GCTNAGC	1 cut(s)	195
Bpu14I	TTCGAA	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	146
Bsa29I	ATCGAT	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	1 cut(s)	268
BseCI	ATCGAT	1 cut(s)	186
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	4 cut(s)	71, 136, 209, 320
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	2 cut(s)	310, 332
BshFI	GGCC	1 cut(s)	13
BshVI	ATCGAT	1 cut(s)	186
BsiHKAI	GWGCWC	2 cut(s)	210, 307
BsiSI	CCGG	2 cut(s)	66, 135
BslI	CCNNNNNNNGG	1 cut(s)	27
BsnI	GGCC	1 cut(s)	13
Bsp119I	TTCGAA	1 cut(s)	213
Bsp1286I	GDGCHC	3 cut(s)	65, 210, 307
Bsp1720I	GCTNAGC	1 cut(s)	195
BspANI	GGCC	1 cut(s)	13
BspCNI	CTCAG	4 cut(s)	70, 135, 208, 319
BspDI	ATCGAT	1 cut(s)	186
BspLI	GGNNCC	2 cut(s)	12, 64
BspQI	GCTCTTC	1 cut(s)	215
BspT104I	TTCGAA	1 cut(s)	213
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	268
BssAI	RCCGGY	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	333
Bst6I	CTCTTC	1 cut(s)	215
BstBI	TTCGAA	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	136, 140
BstDEI	CTNAG	4 cut(s)	57, 122, 195, 306
BstF5I	GGATG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	205
BstV1I	GCAGC	2 cut(s)	310, 332
Bsu15I	ATCGAT	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	13
BsuTUI	ATCGAT	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	115
Cac8I	GCNNGC	2 cut(s)	136, 140
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	11
ClaI	ATCGAT	1 cut(s)	186
CviAII	CATG	1 cut(s)	295
DdeI	CTNAG	4 cut(s)	57, 122, 195, 306
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Ecl136II	GAGCTC	1 cut(s)	208
Eco24I	GRGCYC	2 cut(s)	65, 210
Eco53kI	GAGCTC	1 cut(s)	208
EcoICRI	GAGCTC	1 cut(s)	208
EcoRI	GAATTC	1 cut(s)	74
EcoT38I	GRGCYC	2 cut(s)	65, 210
FaeI	CATG	1 cut(s)	298
FaiI	YATR	7 cut(s)	250, 252, 296, 345, 347, 368, 373
FatI	CATG	1 cut(s)	294
FblI	GTMKAC	1 cut(s)	260
Fnu4HI	GCNGC	2 cut(s)	321, 324
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	2 cut(s)	65, 210
Fsp4HI	GCNGC	2 cut(s)	321, 324
FspBI	CTAG	1 cut(s)	200
GluI	GCNGC	2 cut(s)	321, 324
HaeIII	GGCC	1 cut(s)	13
HapII	CCGG	2 cut(s)	66, 135
Hin1II	CATG	1 cut(s)	298
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HinfI	GANTC	4 cut(s)	47, 177, 279, 349
HpaII	CCGG	2 cut(s)	66, 135
HphI	GGTGA	3 cut(s)	92, 256, 344
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	2 cut(s)	73, 176
Hpy188III	TCNNGA	2 cut(s)	107, 308
Hpy8I	GTNNAC	1 cut(s)	261
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	1 cut(s)	209
HpyCH4III	ACNGT	1 cut(s)	333
HpyF10VI	GCNNNNNNNGC	1 cut(s)	205
HpyF3I	CTNAG	4 cut(s)	57, 122, 195, 306
Hsp92II	CATG	1 cut(s)	298
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
LguI	GCTCTTC	1 cut(s)	215
LmnI	GCTCC	2 cut(s)	68, 97
LpnPI	CCDG	7 cut(s)	44, 79, 148, 207, 249, 259, 293
Lsp1109I	GCAGC	2 cut(s)	310, 332
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	200
MaeIII	GTNAC	3 cut(s)	80, 289, 350
MboII	GAAGA	1 cut(s)	202
MhlI	GDGCHC	3 cut(s)	65, 210, 307
MluCI	AATT	5 cut(s)	16, 22, 52, 74, 145
MlyI	GAGTC	2 cut(s)	56, 358
MnlI	CCTC	4 cut(s)	106, 109, 170, 235
MroNI	GCCGGC	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	2 cut(s)	66, 135
MwoI	GCNNNNNNNGC	1 cut(s)	205
NaeI	GCCGGC	1 cut(s)	136
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	2 cut(s)	12, 64
NmuCI	GTSAC	3 cut(s)	80, 289, 350
NspV	TTCGAA	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	215
PdiI	GCCGGC	1 cut(s)	136
PfeI	GAWTC	2 cut(s)	177, 279
PflFI	GACNNNGTC	1 cut(s)	295
PkrI	GCNGC	2 cut(s)	322, 325
PleI	GAGTC	2 cut(s)	55, 357
PpsI	GAGTC	2 cut(s)	55, 357
Psp124BI	GAGCTC	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	12, 64
PspPI	GGNCC	1 cut(s)	11
PsyI	GACNNNGTC	1 cut(s)	295
PvuII	CAGCTG	1 cut(s)	323
SacI	GAGCTC	1 cut(s)	210
SalI	GTCGAC	1 cut(s)	259
SapI	GCTCTTC	1 cut(s)	215
SatI	GCNGC	2 cut(s)	321, 324
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	2 cut(s)	56, 358
SduI	GDGCHC	3 cut(s)	65, 210, 307
SetI	ASST	9 cut(s)	94, 120, 162, 168, 201, 210, 220, 246, 325
SfaNI	GCATC	1 cut(s)	121
SfuI	TTCGAA	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	5 cut(s)	16, 22, 52, 74, 145
SspI	AATATT	1 cut(s)	229
SspMI	CTAG	1 cut(s)	200
SstI	GAGCTC	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	333
TaqI	TCGA	6 cut(s)	186, 213, 260, 299, 328, 336
TasI	AATT	5 cut(s)	16, 22, 52, 74, 145
TfiI	GAWTC	2 cut(s)	177, 279
TseFI	GTSAC	3 cut(s)	80, 289, 350
TseI	GCWGC	2 cut(s)	320, 323
Tsp45I	GTSAC	3 cut(s)	80, 289, 350
Tth111I	GACNNNGTC	1 cut(s)	295
XapI	RAATTY	3 cut(s)	16, 52, 74
XmiI	GTMKAC	1 cut(s)	260
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.