RchiOBHm_Chr7g0203031

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0015759
Physical Location & Seq
Forward (+)
20702709 .. 20704185
1477 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18171

Sequence Viewer

Length: 267 bp
ATGATATCGGGGTCAAATTCCAATTCGGGGCTAGGGTTCGGCTCTGAATTCAGTGACTTTCTGGCTCCACAAGAGCTTCGGGTTATTGGGTTGGAGTCCGATTTGGATTCAGATAACAATGAATTCAAAAGTGGAGGTAGAAGAGTGGCGGAGGTTACCAGGAGGATGAGGAGGTTCTCAACAACGACGCCAGCGAGCCCAATTTTCCGCCTAACCTCAAGCTCTTCGTCTGAAACCTTCCCTTCACTGTCGACAGTGCTCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.51

Weight (kDa)

5.28

Isoelectric Point (pI)

65.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 251
AciI CCGC 2 cut(s) 149, 208
AcsI RAATTY 3 cut(s) 16, 47, 122
AcyI GRCGYC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 27
AgsI TTSAA 1 cut(s) 127
AjnI CCWGG 1 cut(s) 158
AluBI AGCT 3 cut(s) 76, 222, 264
AluI AGCT 3 cut(s) 76, 222, 264
Alw21I GWGCWC 1 cut(s) 261
ApoI RAATTY 3 cut(s) 16, 47, 122
BanII GRGCYC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 261
BciT130I CCWGG 1 cut(s) 160
BfaI CTAG 1 cut(s) 32
BlpI GCTNAGC 1 cut(s) 260
Bme1390I CCNGG 1 cut(s) 160
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 160
Bpu1102I GCTNAGC 1 cut(s) 260
BpuEI CTTGAG 1 cut(s) 202
BsaHI GRCGYC 1 cut(s) 188
Bsc4I CCNNNNNNNGG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 261
BslI CCNNNNNNNGG 1 cut(s) 27
Bsp1286I GDGCHC 2 cut(s) 200, 261
Bsp1720I GCTNAGC 1 cut(s) 260
BspACI CCGC 2 cut(s) 149, 208
BspLI GGNNCC 1 cut(s) 66
BspQI GCTCTTC 1 cut(s) 229
BssNI GRCGYC 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 2 cut(s) 249, 256
Bst6I CTCTTC 2 cut(s) 136, 229
BstACI GRCGYC 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 192, 196
BstDEI CTNAG 1 cut(s) 260
BstEII GGTNACC 1 cut(s) 154
BstF5I GGATG 1 cut(s) 171
BstNI CCWGG 1 cut(s) 160
BstPI GGTNACC 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 158
BtsCI GGATG 1 cut(s) 171
BtsIMutI CAGTG 3 cut(s) 58, 245, 261
Cac8I GCNNGC 2 cut(s) 192, 196
CseI GACGC 1 cut(s) 196
CviJI RGCY 7 cut(s) 31, 42, 65, 76, 198, 222, 264
CviKI_1 RGCY 7 cut(s) 31, 42, 65, 76, 198, 222, 264
DdeI CTNAG 1 cut(s) 260
Eam1104I CTCTTC 2 cut(s) 136, 229
EarI CTCTTC 2 cut(s) 136, 229
EciI GGCGGA 2 cut(s) 164, 197
Eco24I GRGCYC 1 cut(s) 200
Eco32I GATATC 1 cut(s) 6
Eco91I GGTNACC 1 cut(s) 154
EcoO65I GGTNACC 1 cut(s) 154
EcoRI GAATTC 2 cut(s) 47, 122
EcoRII CCWGG 1 cut(s) 158
EcoRV GATATC 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 200
FblI GTMKAC 1 cut(s) 251
FokI GGATG 1 cut(s) 178
FriOI GRGCYC 1 cut(s) 200
FspBI CTAG 1 cut(s) 32
HgaI GACGC 1 cut(s) 196
Hin1I GRCGYC 1 cut(s) 188
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 2 cut(s) 95, 107
Hpy166II GTNNAC 1 cut(s) 252
Hpy188I TCNGA 4 cut(s) 46, 100, 112, 232
Hpy8I GTNNAC 1 cut(s) 252
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 2 cut(s) 247, 252
HpyCH4III ACNGT 2 cut(s) 249, 256
HpyF3I CTNAG 1 cut(s) 260
Hsp92I GRCGYC 1 cut(s) 188
LguI GCTCTTC 1 cut(s) 229
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 4 cut(s) 47, 145, 172, 204
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 2 cut(s) 53, 154
MboII GAAGA 2 cut(s) 153, 216
MhlI GDGCHC 2 cut(s) 200, 261
MluCI AATT 5 cut(s) 16, 22, 47, 122, 201
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 6 cut(s) 128, 145, 156, 162, 165, 226
MspR9I CCNGG 1 cut(s) 160
MvaI CCWGG 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 53
PciSI GCTCTTC 1 cut(s) 229
PcsI WCGNNNNNNNCGW 1 cut(s) 191
PfeI GAWTC 1 cut(s) 107
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 158
PspEI GGTNACC 1 cut(s) 154
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 66
SalI GTCGAC 1 cut(s) 250
SapI GCTCTTC 1 cut(s) 229
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 160
SduI GDGCHC 2 cut(s) 200, 261
SetI ASST 8 cut(s) 78, 139, 156, 176, 218, 224, 239, 266
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
Sse9I AATT 5 cut(s) 16, 22, 47, 122, 201
SsiI CCGC 2 cut(s) 149, 208
SspMI CTAG 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 158
TaaI ACNGT 2 cut(s) 249, 256
TaqI TCGA 1 cut(s) 251
TasI AATT 5 cut(s) 16, 22, 47, 122, 201
TfiI GAWTC 1 cut(s) 107
TscAI CASTG 3 cut(s) 58, 252, 261
TseFI GTSAC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 1 cut(s) 135
TspRI CASTG 3 cut(s) 58, 252, 261
XapI RAATTY 3 cut(s) 16, 47, 122
XmiI GTMKAC 1 cut(s) 251
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.