Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0015759

Physical Location & Seq

Genomic Coordinates Reverse (-)

62453212 .. 62461058

Gene Structure 7847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG405300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGATATCGGGGTCAAATTCCAATTCGGGGCTAGGGTTTGGGGTGGAGTCAAATTCTCAGGGCTCTGGCTCTGAATTCAGTGACTTTCTGGCTCCACAAGGGCTTCAGGTTGTTGGGTTGGAGTCCGATTCGGATTCGAATAACGATGAATTTGAAAGCGGAGGTAGAAGAGTGGCGGAGGTTACCAGGAGGATGAGGAGTGCTCAGCTAACTGAGCTCTTCGAAGGTGCTAGAAATGTTGAGATGGTTGAGGTGATATATGACAAGACGACTGGGAGAAGCAAGAGATTCGGGTTTGTGACCATGTCGAGTGCTCAGGAAGTAGAAGCAGCTGCTCGACAGTTCAATGGCTCTTTGATTGTACCTGAGATTCTAGTTGTGGATTCGGCTGGAGTAGTAGAATTGAAACAAGCTGAGATTCTAGTTGCTGGCAATGGCAGTGAACAACCCAACAATTGGACTGCGGCGGCGGCGGGACTGATCACTGATGGACTTGAAACAGAAAATTATACTAAAAGTAAAAATGGAAACACGTGTGGCGCCGAGACTAAACTGGCCAACCACCGTGTAACCACAAAGTTCGCGCCGCGCCCTCCAGGTTTATCTCCCACGTGTGTCACGCAAGTCAATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008187 GO:0008266 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009894 GO:0009895 GO:0009941 GO:0010033 GO:0010319 GO:0010468 GO:0010605 GO:0010608 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043489 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055035 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902369

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

211

Amino Acids

22.37

Weight (kDa)

4.75

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	60 - 118	1.6e-08	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015759)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0026031 RchiOBHm_Chr7g0203031
rosa_multiflora	Rmu_co8054850.1_g000001 Rmu_sc0006847.1_g000017
rosa_roxburghii	Rroxscaffold_1G00038260
rosa_rugosa	Rorug02G0443100
rosa_samantha	Rh1BG340600 Rh1CG353700 Rh1CG388500 Rh1DG371500 Rh1DG405300 Rh5BG221800 Rh5CG198900 Rh5DG181400 Rh7AG202600 Rh7AG275400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	539
AccB7I	CCANNNNNTGG	1 cut(s)	456
AccII	CGCG	2 cut(s)	584, 589
AciI	CCGC	7 cut(s)	159, 176, 464, 467, 470, 473, 587
AcoI	YGGCCR	1 cut(s)	555
AcsI	RAATTY	4 cut(s)	16, 52, 74, 149
AcuI	CTGAAG	1 cut(s)	89
AcvI	CACGTG	2 cut(s)	534, 612
AcyI	GRCGYC	1 cut(s)	540
AfaI	GTAC	1 cut(s)	363
AfiI	CCNNNNNNNGG	2 cut(s)	27, 456
AflIII	ACRYGT	3 cut(s)	531, 533, 611
AgsI	TTSAA	4 cut(s)	155, 346, 406, 497
AjnI	CCWGG	2 cut(s)	185, 595
AluBI	AGCT	4 cut(s)	208, 217, 332, 413
AluI	AGCT	4 cut(s)	208, 217, 332, 413
Alw21I	GWGCWC	3 cut(s)	205, 219, 316
Alw26I	GTCTC	1 cut(s)	539
AoxI	GGCC	1 cut(s)	555
ApeKI	GCWGC	2 cut(s)	329, 332
ApoI	RAATTY	4 cut(s)	16, 52, 74, 149
AspLEI	GCGC	3 cut(s)	542, 586, 591
AsuHPI	GGTGA	1 cut(s)	265
AsuII	TTCGAA	2 cut(s)	137, 222
BalI	TGGCCA	1 cut(s)	557
BanI	GGYRCC	1 cut(s)	539
BanII	GRGCYC	2 cut(s)	65, 219
BbrPI	CACGTG	2 cut(s)	534, 612
Bbv12I	GWGCWC	3 cut(s)	205, 219, 316
BbvI	GCAGC	2 cut(s)	319, 341
BccI	CCATC	2 cut(s)	238, 482
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciT130I	CCWGG	2 cut(s)	187, 597
BclI	TGATCA	1 cut(s)	480
BcoDI	GTCTC	1 cut(s)	539
BfaI	CTAG	4 cut(s)	32, 231, 374, 422
BfoI	RGCGCY	1 cut(s)	543
BisI	GCNGC	6 cut(s)	330, 333, 465, 468, 471, 587
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	6 cut(s)	331, 334, 466, 469, 472, 588
Bme1390I	CCNGG	2 cut(s)	187, 597
BmiI	GGNNCC	2 cut(s)	93, 541
BmrFI	CCNGG	2 cut(s)	187, 597
BmrI	ACTGGG	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	282
BplI	GAGNNNNNCTC	2 cut(s)	187, 219
BpmI	CTGGAG	2 cut(s)	411, 579
Bpu10I	CCTNAGC	1 cut(s)	315
Bpu1102I	GCTNAGC	1 cut(s)	204
Bpu14I	TTCGAA	2 cut(s)	137, 222
BsaAI	YACGTR	2 cut(s)	534, 612
BsaHI	GRCGYC	1 cut(s)	540
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 456
Bse1I	ACTGG	2 cut(s)	277, 558
Bse3DI	GCAATG	1 cut(s)	439
BseBI	CCWGG	2 cut(s)	187, 597
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	2 cut(s)	27, 456
BseMI	GCAATG	1 cut(s)	439
BseMII	CTCAG	6 cut(s)	71, 204, 218, 329, 357, 405
BseNI	ACTGG	2 cut(s)	277, 558
BseRI	GAGGAG	1 cut(s)	211
BseXI	GCAGC	2 cut(s)	319, 341
Bsh1236I	CGCG	2 cut(s)	584, 589
BshFI	GGCC	1 cut(s)	557
BshNI	GGYRCC	1 cut(s)	539
BsiHKAI	GWGCWC	3 cut(s)	205, 219, 316
BslFI	GGGAC	1 cut(s)	489
BslI	CCNNNNNNNGG	2 cut(s)	27, 456
BsmAI	GTCTC	1 cut(s)	539
BsmFI	GGGAC	1 cut(s)	489
BsnI	GGCC	1 cut(s)	557
Bsp119I	TTCGAA	2 cut(s)	137, 222
Bsp1286I	GDGCHC	4 cut(s)	65, 205, 219, 316
Bsp143I	GATC	1 cut(s)	480
Bsp1720I	GCTNAGC	1 cut(s)	204
BspACI	CCGC	7 cut(s)	159, 176, 464, 467, 470, 473, 587
BspANI	GGCC	1 cut(s)	557
BspCNI	CTCAG	6 cut(s)	70, 205, 217, 328, 358, 406
BspFNI	CGCG	2 cut(s)	584, 589
BspLI	GGNNCC	2 cut(s)	93, 541
BspQI	GCTCTTC	1 cut(s)	224
BspT104I	TTCGAA	2 cut(s)	137, 222
BspT107I	GGYRCC	1 cut(s)	539
BsrDI	GCAATG	1 cut(s)	439
BsrI	ACTGG	2 cut(s)	277, 558
BssMI	GATC	1 cut(s)	480
BssNI	GRCGYC	1 cut(s)	540
Bst2UI	CCWGG	2 cut(s)	187, 597
Bst4CI	ACNGT	2 cut(s)	342, 566
Bst6I	CTCTTC	2 cut(s)	163, 224
BstACI	GRCGYC	1 cut(s)	540
BstBAI	YACGTR	2 cut(s)	534, 612
BstBI	TTCGAA	2 cut(s)	137, 222
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	6 cut(s)	57, 204, 213, 315, 366, 414
BstEII	GGTNACC	1 cut(s)	181
BstF5I	GGATG	1 cut(s)	198
BstFNI	CGCG	2 cut(s)	584, 589
BstH2I	RGCGCY	1 cut(s)	543
BstHHI	GCGC	3 cut(s)	542, 586, 591
BstKTI	GATC	1 cut(s)	483
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	1 cut(s)	480
BstMWI	GCNNNNNNNGC	2 cut(s)	214, 470
BstNI	CCWGG	2 cut(s)	187, 597
BstPI	GGTNACC	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	185, 595
BstUI	CGCG	2 cut(s)	584, 589
BstV1I	GCAGC	2 cut(s)	319, 341
BsuRI	GGCC	1 cut(s)	557
BtsCI	GGATG	1 cut(s)	198
BtsI	GCAGTG	1 cut(s)	445
BtsIMutI	CAGTG	3 cut(s)	85, 445, 483
Cac8I	GCNNGC	1 cut(s)	430
CfoI	GCGC	3 cut(s)	542, 586, 591
Csp6I	GTAC	1 cut(s)	362
CviAII	CATG	1 cut(s)	304
CviQI	GTAC	1 cut(s)	362
DdeI	CTNAG	6 cut(s)	57, 204, 213, 315, 366, 414
DinI	GGCGCC	1 cut(s)	541
DpnI	GATC	1 cut(s)	482
DpnII	GATC	1 cut(s)	480
EaeI	YGGCCR	1 cut(s)	555
Eam1104I	CTCTTC	2 cut(s)	163, 224
EarI	CTCTTC	2 cut(s)	163, 224
EciI	GGCGGA	1 cut(s)	191
Ecl136II	GAGCTC	1 cut(s)	217
Eco24I	GRGCYC	2 cut(s)	65, 219
Eco32I	GATATC	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	89
Eco72I	CACGTG	2 cut(s)	534, 612
Eco91I	GGTNACC	1 cut(s)	181
EcoICRI	GAGCTC	1 cut(s)	217
EcoO65I	GGTNACC	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	185, 595
EcoRV	GATATC	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	65, 219
EgeI	GGCGCC	1 cut(s)	541
EheI	GGCGCC	1 cut(s)	541
FaeI	CATG	1 cut(s)	307
FaiI	YATR	4 cut(s)	259, 261, 305, 510
FaqI	GGGAC	1 cut(s)	489
FatI	CATG	1 cut(s)	303
FauI	CCCGC	1 cut(s)	466
FbaI	TGATCA	1 cut(s)	480
Fnu4HI	GCNGC	6 cut(s)	330, 333, 465, 468, 471, 587
FokI	GGATG	1 cut(s)	205
FriOI	GRGCYC	2 cut(s)	65, 219
Fsp4HI	GCNGC	6 cut(s)	330, 333, 465, 468, 471, 587
FspBI	CTAG	4 cut(s)	32, 231, 374, 422
GlaI	GCGC	3 cut(s)	541, 585, 590
GluI	GCNGC	6 cut(s)	330, 333, 465, 468, 471, 587
GsuI	CTGGAG	2 cut(s)	411, 579
HaeII	RGCGCY	1 cut(s)	543
HaeIII	GGCC	1 cut(s)	557
HhaI	GCGC	3 cut(s)	542, 586, 591
Hin1I	GRCGYC	1 cut(s)	540
Hin1II	CATG	1 cut(s)	307
Hin6I	GCGC	3 cut(s)	540, 584, 589
HinP1I	GCGC	3 cut(s)	540, 584, 589
HinfI	GANTC	8 cut(s)	47, 122, 128, 134, 288, 370, 383, 418
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	1 cut(s)	443
Hpy188I	TCNGA	3 cut(s)	73, 127, 133
Hpy188III	TCNNGA	1 cut(s)	317
Hpy8I	GTNNAC	1 cut(s)	443
HpyAV	CCTTC	1 cut(s)	218
HpyCH4III	ACNGT	2 cut(s)	342, 566
HpyCH4IV	ACGT	2 cut(s)	533, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	214, 470
HpyF3I	CTNAG	6 cut(s)	57, 204, 213, 315, 366, 414
HpySE526I	ACGT	2 cut(s)	533, 611
Hsp92I	GRCGYC	1 cut(s)	540
Hsp92II	CATG	1 cut(s)	307
HspAI	GCGC	3 cut(s)	540, 584, 589
KasI	GGCGCC	1 cut(s)	539
Ksp22I	TGATCA	1 cut(s)	480
Kzo9I	GATC	1 cut(s)	480
LguI	GCTCTTC	1 cut(s)	224
LmnI	GCTCC	1 cut(s)	97
Lsp1109I	GCAGC	2 cut(s)	319, 341
MaeI	CTAG	4 cut(s)	32, 231, 374, 422
MaeII	ACGT	2 cut(s)	533, 611
MaeIII	GTNAC	5 cut(s)	80, 181, 298, 568, 616
MalI	GATC	1 cut(s)	482
MboI	GATC	1 cut(s)	480
MboII	GAAGA	2 cut(s)	180, 211
MfeI	CAATTG	1 cut(s)	454
MhlI	GDGCHC	4 cut(s)	65, 205, 219, 316
MlsI	TGGCCA	1 cut(s)	557
MluCI	AATT	8 cut(s)	16, 22, 52, 74, 149, 401, 454, 505
MluNI	TGGCCA	1 cut(s)	557
Mly113I	GGCGCC	1 cut(s)	540
MlyI	GAGTC	2 cut(s)	56, 131
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	6 cut(s)	155, 172, 183, 189, 244, 603
Mox20I	TGGCCA	1 cut(s)	557
MscI	TGGCCA	1 cut(s)	557
Msp20I	TGGCCA	1 cut(s)	557
MspA1I	CMGCKG	1 cut(s)	332
MspR9I	CCNGG	2 cut(s)	187, 597
MteI	GCGCNGCGC	1 cut(s)	587
MunI	CAATTG	1 cut(s)	454
MvaI	CCWGG	2 cut(s)	187, 597
MvnI	CGCG	2 cut(s)	584, 589
MwoI	GCNNNNNNNGC	2 cut(s)	214, 470
NarI	GGCGCC	1 cut(s)	540
NdeII	GATC	1 cut(s)	480
NlaIII	CATG	1 cut(s)	307
NlaIV	GGNNCC	2 cut(s)	93, 541
NmeAIII	GCCGAG	1 cut(s)	568
NmuCI	GTSAC	3 cut(s)	80, 298, 616
NspV	TTCGAA	2 cut(s)	137, 222
PciSI	GCTCTTC	1 cut(s)	224
PfeI	GAWTC	6 cut(s)	128, 134, 288, 370, 383, 418
PflFI	GACNNNGTC	1 cut(s)	304
PflMI	CCANNNNNTGG	1 cut(s)	456
PkrI	GCNGC	6 cut(s)	331, 334, 466, 469, 472, 588
PleI	GAGTC	2 cut(s)	55, 130
PluTI	GGCGCC	1 cut(s)	543
PmaCI	CACGTG	2 cut(s)	534, 612
PmlI	CACGTG	2 cut(s)	534, 612
PpsI	GAGTC	2 cut(s)	55, 130
Ppu21I	YACGTR	2 cut(s)	534, 612
Psp124BI	GAGCTC	1 cut(s)	219
Psp6I	CCWGG	2 cut(s)	185, 595
PspCI	CACGTG	2 cut(s)	534, 612
PspEI	GGTNACC	1 cut(s)	181
PspGI	CCWGG	2 cut(s)	185, 595
PspN4I	GGNNCC	2 cut(s)	93, 541
PsyI	GACNNNGTC	1 cut(s)	304
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
SacI	GAGCTC	1 cut(s)	219
SapI	GCTCTTC	1 cut(s)	224
SatI	GCNGC	6 cut(s)	330, 333, 465, 468, 471, 587
Sau3AI	GATC	1 cut(s)	480
SchI	GAGTC	2 cut(s)	56, 131
ScrFI	CCNGG	2 cut(s)	187, 597
SduI	GDGCHC	4 cut(s)	65, 205, 219, 316
SfoI	GGCGCC	1 cut(s)	541
SfuI	TTCGAA	2 cut(s)	137, 222
Sse9I	AATT	8 cut(s)	16, 22, 52, 74, 149, 401, 454, 505
SsiI	CCGC	7 cut(s)	159, 176, 464, 467, 470, 473, 587
SspDI	GGCGCC	1 cut(s)	539
SspMI	CTAG	4 cut(s)	32, 231, 374, 422
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	185, 595
TaaI	ACNGT	2 cut(s)	342, 566
TaiI	ACGT	2 cut(s)	536, 614
TaqI	TCGA	4 cut(s)	137, 222, 308, 337
TasI	AATT	8 cut(s)	16, 22, 52, 74, 149, 401, 454, 505
TauI	GCSGC	4 cut(s)	467, 470, 473, 589
TfiI	GAWTC	6 cut(s)	128, 134, 288, 370, 383, 418
TscAI	CASTG	3 cut(s)	85, 445, 490
TseFI	GTSAC	3 cut(s)	80, 298, 616
TseI	GCWGC	2 cut(s)	329, 332
Tsp45I	GTSAC	3 cut(s)	80, 298, 616
TspDTI	ATGAA	1 cut(s)	162
TspRI	CASTG	3 cut(s)	85, 445, 490
Tth111I	GACNNNGTC	1 cut(s)	304
Van91I	CCANNNNNTGG	1 cut(s)	456
XapI	RAATTY	4 cut(s)	16, 52, 74, 149
XspI	CTAG	4 cut(s)	32, 231, 374, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.