Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0015759

Physical Location & Seq

Genomic Coordinates Reverse (-)

19910008 .. 19911371

Gene Structure 1364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG198900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGACGGCAATGATATCAGGGTCAAATTCCAATTCGGGGCTAGGGTTTGGGGTGGAGTCAAATTCTCAGGGTTCCAGCTCTAAATTCAGTGACTTTCTAGCTCCACAAGGGCTTCGAGTTGTTGGGTTGGAGTCCGATTCAGATTTGGATAAAAATGAATTCAAAAGTGGAGGTAGAAGAGCGGCGAAGGTTACCAGGAGGATGATGAGGTTCTCAGTGACGACGCCGTTTCGAACTTCGAGCAGGACGAGGAGGTTCTCAGTGACGAGGCCGGTGAGCCCAATTTCTTGCCTGACCTCAAGCTCTTCATCGAAAACCTTCCCCTCACTGTCGCTAACTGAGCTCTTCGAAGGTGCTGGAAATGTTGAGATGGTTGAGGTATGGTTTTGTTTTTCATTCGAAATTTTGCATCTTTTTTTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

141

Amino Acids

15.43

Weight (kDa)

9.58

Isoelectric Point (pI)

54.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015759)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0026031 RchiOBHm_Chr7g0203031
rosa_multiflora	Rmu_co8054850.1_g000001 Rmu_sc0006847.1_g000017
rosa_roxburghii	Rroxscaffold_1G00038260
rosa_rugosa	Rorug02G0443100
rosa_samantha	Rh1BG340600 Rh1CG353700 Rh1CG388500 Rh1DG371500 Rh1DG405300 Rh5BG221800 Rh5CG198900 Rh5DG181400 Rh7AG202600 Rh7AG275400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	182
AciI	CCGC	1 cut(s)	182
AcsI	RAATTY	5 cut(s)	25, 61, 83, 158, 402
AcyI	GRCGYC	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	36
AgsI	TTSAA	2 cut(s)	163, 421
AjnI	CCWGG	1 cut(s)	194
AluBI	AGCT	4 cut(s)	78, 101, 303, 343
AluI	AGCT	4 cut(s)	78, 101, 303, 343
Alw21I	GWGCWC	1 cut(s)	345
AoxI	GGCC	1 cut(s)	269
ApoI	RAATTY	5 cut(s)	25, 61, 83, 158, 402
Asp700I	GAANNNNTTC	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	286
AsuII	TTCGAA	3 cut(s)	232, 348, 399
BanII	GRGCYC	2 cut(s)	281, 345
Bbv12I	GWGCWC	1 cut(s)	345
BccI	CCATC	1 cut(s)	364
BceAI	ACGGC	2 cut(s)	21, 211
BciT130I	CCWGG	1 cut(s)	196
BfaI	CTAG	2 cut(s)	41, 98
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme1390I	CCNGG	1 cut(s)	196
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	196
BmsI	GCATC	1 cut(s)	418
Bpu14I	TTCGAA	3 cut(s)	232, 348, 399
BpuEI	CTTGAG	1 cut(s)	283
BsaHI	GRCGYC	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
Bse118I	RCCGGY	1 cut(s)	271
Bse3DI	GCAATG	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	196
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	36
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	4 cut(s)	80, 228, 273, 330
BseRI	GAGGAG	1 cut(s)	265
BshFI	GGCC	1 cut(s)	271
BsiHKAI	GWGCWC	1 cut(s)	345
BsiSI	CCGG	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	36
BsnI	GGCC	1 cut(s)	271
Bsp119I	TTCGAA	3 cut(s)	232, 348, 399
Bsp1286I	GDGCHC	2 cut(s)	281, 345
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	1 cut(s)	271
BspCNI	CTCAG	4 cut(s)	79, 227, 272, 331
BspLI	GGNNCC	1 cut(s)	73
BspQI	GCTCTTC	3 cut(s)	172, 310, 350
BspT104I	TTCGAA	3 cut(s)	232, 348, 399
BsrBI	CCGCTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	15
BsrFI	RCCGGY	1 cut(s)	271
BssAI	RCCGGY	1 cut(s)	271
BssNI	GRCGYC	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	196
Bst4CI	ACNGT	1 cut(s)	330
Bst6I	CTCTTC	3 cut(s)	172, 310, 350
BstACI	GRCGYC	1 cut(s)	224
BstBI	TTCGAA	3 cut(s)	232, 348, 399
BstDEI	CTNAG	4 cut(s)	66, 214, 259, 339
BstEII	GGTNACC	1 cut(s)	190
BstF5I	GGATG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstNI	CCWGG	1 cut(s)	196
BstPI	GGTNACC	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	207
BtsIMutI	CAGTG	4 cut(s)	94, 222, 267, 326
Cfr10I	RCCGGY	1 cut(s)	271
CseI	GACGC	1 cut(s)	232
CviJI	RGCY	8 cut(s)	40, 78, 101, 112, 271, 279, 303, 343
CviKI_1	RGCY	8 cut(s)	40, 78, 101, 112, 271, 279, 303, 343
DdeI	CTNAG	4 cut(s)	66, 214, 259, 339
Eam1104I	CTCTTC	3 cut(s)	172, 310, 350
EarI	CTCTTC	3 cut(s)	172, 310, 350
Ecl136II	GAGCTC	1 cut(s)	343
Eco24I	GRGCYC	2 cut(s)	281, 345
Eco32I	GATATC	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	343
Eco91I	GGTNACC	1 cut(s)	190
EcoICRI	GAGCTC	1 cut(s)	343
EcoO65I	GGTNACC	1 cut(s)	190
EcoRI	GAATTC	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	194
EcoRV	GATATC	1 cut(s)	15
EcoT38I	GRGCYC	2 cut(s)	281, 345
FaiI	YATR	1 cut(s)	382
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	1 cut(s)	214
FriOI	GRGCYC	2 cut(s)	281, 345
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	2 cut(s)	41, 98
GluI	GCNGC	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	271
HapII	CCGG	1 cut(s)	272
HgaI	GACGC	1 cut(s)	232
Hin1I	GRCGYC	1 cut(s)	224
HinfI	GANTC	3 cut(s)	56, 131, 137
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	1 cut(s)	286
Hpy188I	TCNGA	2 cut(s)	136, 142
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	3 cut(s)	181, 328, 344
HpyCH4III	ACNGT	1 cut(s)	330
HpyCH4V	TGCA	1 cut(s)	409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	4 cut(s)	66, 214, 259, 339
Hsp92I	GRCGYC	1 cut(s)	224
LguI	GCTCTTC	3 cut(s)	172, 310, 350
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	9 cut(s)	3, 53, 88, 181, 208, 229, 285, 305, 342
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	2 cut(s)	41, 98
MaeIII	GTNAC	4 cut(s)	89, 190, 217, 262
MbiI	CCGCTC	1 cut(s)	182
MboII	GAAGA	3 cut(s)	189, 297, 337
MhlI	GDGCHC	2 cut(s)	281, 345
MluCI	AATT	8 cut(s)	25, 31, 61, 83, 158, 282, 402, 421
MlyI	GAGTC	2 cut(s)	65, 140
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	9 cut(s)	164, 192, 201, 243, 246, 261, 307, 334, 370
MroXI	GAANNNNTTC	1 cut(s)	317
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	196
MwoI	GCNNNNNNNGC	1 cut(s)	340
NlaIV	GGNNCC	1 cut(s)	73
NmuCI	GTSAC	3 cut(s)	89, 217, 262
NspV	TTCGAA	3 cut(s)	232, 348, 399
PciSI	GCTCTTC	3 cut(s)	172, 310, 350
PcsI	WCGNNNNNNNCGW	1 cut(s)	245
PdmI	GAANNNNTTC	1 cut(s)	317
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	184
PleI	GAGTC	2 cut(s)	64, 139
PpsI	GAGTC	2 cut(s)	64, 139
Psp124BI	GAGCTC	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	194
PspEI	GGTNACC	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	194
PspN4I	GGNNCC	1 cut(s)	73
SacI	GAGCTC	1 cut(s)	345
SapI	GCTCTTC	3 cut(s)	172, 310, 350
SatI	GCNGC	1 cut(s)	183
SchI	GAGTC	2 cut(s)	65, 140
ScrFI	CCNGG	1 cut(s)	196
SduI	GDGCHC	2 cut(s)	281, 345
SfaNI	GCATC	1 cut(s)	418
SfuI	TTCGAA	3 cut(s)	232, 348, 399
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
Sse9I	AATT	8 cut(s)	25, 31, 61, 83, 158, 282, 402, 421
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	2 cut(s)	41, 98
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	194
TaaI	ACNGT	1 cut(s)	330
TaqI	TCGA	6 cut(s)	115, 232, 239, 311, 348, 399
TasI	AATT	8 cut(s)	25, 31, 61, 83, 158, 282, 402, 421
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	1 cut(s)	137
TscAI	CASTG	4 cut(s)	94, 222, 267, 333
TseFI	GTSAC	3 cut(s)	89, 217, 262
Tsp45I	GTSAC	3 cut(s)	89, 217, 262
TspDTI	ATGAA	3 cut(s)	171, 297, 384
TspRI	CASTG	4 cut(s)	94, 222, 267, 333
XapI	RAATTY	5 cut(s)	25, 61, 83, 158, 402
XmnI	GAANNNNTTC	1 cut(s)	317
XspI	CTAG	2 cut(s)	41, 98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.