Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0015759

Physical Location & Seq

Genomic Coordinates Reverse (-)

20052937 .. 20053600

Gene Structure 664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG181400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGACGGCAATGATATCAGGGTCAAATTCCAATTCGGGGCTAGGGTTTGGGGTGGAGTCAAATTCTCTGGGTTCCAGCTCTAAATTCAGTGACTTTCTAGCTCCACAAGGGCTTCGAGTTGTTGGGTTGGAGTCCGATTCAGATTTGGATAAAAATGAATTCAAAAGTGGAGGTAGAAGAGCGGCGAAGGTTACCAGGAGGATGATGAGGTTCTCAGTGACGACGCCGTTTCGAACTTCGAGCAGGACGAGGAGGTTCTCAGTGACGAGGCCGGTGAGCCCAATTTCTTGCCTGACCTCAAGCTCTTCATCGAAAACCTTCCCCTCACTGTCGCTAACTGAGCTCTTCGAAGGTGCTGGAAATGTTGAGATGGTTGAGGTGATATATGACAAGATGACTGGGAGAAGAAGGGGATTCGGGTTTGTGACCATGTCGAGTGCTCAGGAAGTAGAAGCAGCTGCTCGACAGTTCAATGGCTATGTGAGTCACCATTTTGTGTCTATGATTTGTGTGTGTATATGTGAGAAGGTGAAAAAAATTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008187 GO:0008266 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009894 GO:0009895 GO:0009941 GO:0010033 GO:0010319 GO:0010468 GO:0010605 GO:0010608 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043489 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055035 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902369

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

181

Amino Acids

19.73

Weight (kDa)

9.83

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	112 - 161	4.5e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015759)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0026031 RchiOBHm_Chr7g0203031
rosa_multiflora	Rmu_co8054850.1_g000001 Rmu_sc0006847.1_g000017
rosa_roxburghii	Rroxscaffold_1G00038260
rosa_rugosa	Rorug02G0443100
rosa_samantha	Rh1BG340600 Rh1CG353700 Rh1CG388500 Rh1DG371500 Rh1DG405300 Rh5BG221800 Rh5CG198900 Rh5DG181400 Rh7AG202600 Rh7AG275400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	182
AciI	CCGC	1 cut(s)	182
AcsI	RAATTY	4 cut(s)	25, 61, 83, 158
AcyI	GRCGYC	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	36
AgsI	TTSAA	2 cut(s)	163, 472
AjnI	CCWGG	1 cut(s)	194
AluBI	AGCT	5 cut(s)	78, 101, 303, 343, 458
AluI	AGCT	5 cut(s)	78, 101, 303, 343, 458
Alw21I	GWGCWC	2 cut(s)	345, 442
AoxI	GGCC	1 cut(s)	269
ApeKI	GCWGC	2 cut(s)	455, 458
ApoI	RAATTY	4 cut(s)	25, 61, 83, 158
Asp700I	GAANNNNTTC	1 cut(s)	317
AsuHPI	GGTGA	4 cut(s)	286, 391, 479, 541
AsuII	TTCGAA	2 cut(s)	232, 348
BanII	GRGCYC	2 cut(s)	281, 345
Bbv12I	GWGCWC	2 cut(s)	345, 442
BbvI	GCAGC	2 cut(s)	445, 467
BccI	CCATC	1 cut(s)	364
BceAI	ACGGC	2 cut(s)	21, 211
BciT130I	CCWGG	1 cut(s)	196
BfaI	CTAG	2 cut(s)	41, 98
BisI	GCNGC	3 cut(s)	183, 456, 459
BlsI	GCNGC	3 cut(s)	184, 457, 460
Bme1390I	CCNGG	1 cut(s)	196
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	196
BmrI	ACTGGG	1 cut(s)	408
BmuI	ACTGGG	1 cut(s)	408
Bpu10I	CCTNAGC	1 cut(s)	441
Bpu14I	TTCGAA	2 cut(s)	232, 348
BpuEI	CTTGAG	1 cut(s)	283
BsaHI	GRCGYC	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
Bse118I	RCCGGY	1 cut(s)	271
Bse1I	ACTGG	1 cut(s)	403
Bse3DI	GCAATG	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	196
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	36
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	4 cut(s)	228, 273, 330, 455
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	1 cut(s)	265
BseXI	GCAGC	2 cut(s)	445, 467
BshFI	GGCC	1 cut(s)	271
BsiHKAI	GWGCWC	2 cut(s)	345, 442
BsiSI	CCGG	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	36
BsnI	GGCC	1 cut(s)	271
Bsp119I	TTCGAA	2 cut(s)	232, 348
Bsp1286I	GDGCHC	3 cut(s)	281, 345, 442
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	1 cut(s)	271
BspCNI	CTCAG	4 cut(s)	227, 272, 331, 454
BspLI	GGNNCC	1 cut(s)	73
BspQI	GCTCTTC	3 cut(s)	172, 310, 350
BspT104I	TTCGAA	2 cut(s)	232, 348
BsrBI	CCGCTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	15
BsrFI	RCCGGY	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	403
BssAI	RCCGGY	1 cut(s)	271
BssNI	GRCGYC	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	196
Bst4CI	ACNGT	2 cut(s)	330, 468
Bst6I	CTCTTC	3 cut(s)	172, 310, 350
BstACI	GRCGYC	1 cut(s)	224
BstBI	TTCGAA	2 cut(s)	232, 348
BstDEI	CTNAG	4 cut(s)	214, 259, 339, 441
BstEII	GGTNACC	1 cut(s)	190
BstF5I	GGATG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstNI	CCWGG	1 cut(s)	196
BstPI	GGTNACC	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	194
BstV1I	GCAGC	2 cut(s)	445, 467
BsuRI	GGCC	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	207
BtsIMutI	CAGTG	4 cut(s)	94, 222, 267, 326
Cfr10I	RCCGGY	1 cut(s)	271
CseI	GACGC	1 cut(s)	232
CviAII	CATG	1 cut(s)	430
DdeI	CTNAG	4 cut(s)	214, 259, 339, 441
Eam1104I	CTCTTC	3 cut(s)	172, 310, 350
EarI	CTCTTC	3 cut(s)	172, 310, 350
Ecl136II	GAGCTC	1 cut(s)	343
Eco24I	GRGCYC	2 cut(s)	281, 345
Eco32I	GATATC	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	343
Eco91I	GGTNACC	1 cut(s)	190
EcoICRI	GAGCTC	1 cut(s)	343
EcoO65I	GGTNACC	1 cut(s)	190
EcoRI	GAATTC	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	194
EcoRV	GATATC	1 cut(s)	15
EcoT38I	GRGCYC	2 cut(s)	281, 345
FaeI	CATG	1 cut(s)	433
FaiI	YATR	7 cut(s)	385, 387, 431, 480, 503, 518, 520
FatI	CATG	1 cut(s)	429
Fnu4HI	GCNGC	3 cut(s)	183, 456, 459
FokI	GGATG	1 cut(s)	214
FriOI	GRGCYC	2 cut(s)	281, 345
Fsp4HI	GCNGC	3 cut(s)	183, 456, 459
FspBI	CTAG	2 cut(s)	41, 98
GluI	GCNGC	3 cut(s)	183, 456, 459
HaeIII	GGCC	1 cut(s)	271
HapII	CCGG	1 cut(s)	272
HgaI	GACGC	1 cut(s)	232
Hin1I	GRCGYC	1 cut(s)	224
Hin1II	CATG	1 cut(s)	433
HinfI	GANTC	5 cut(s)	56, 131, 137, 414, 484
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	4 cut(s)	286, 391, 479, 541
Hpy188I	TCNGA	2 cut(s)	136, 142
Hpy188III	TCNNGA	1 cut(s)	443
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	5 cut(s)	181, 328, 344, 402, 520
HpyCH4III	ACNGT	2 cut(s)	330, 468
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	4 cut(s)	214, 259, 339, 441
Hsp92I	GRCGYC	1 cut(s)	224
Hsp92II	CATG	1 cut(s)	433
LguI	GCTCTTC	3 cut(s)	172, 310, 350
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	2 cut(s)	445, 467
MaeI	CTAG	2 cut(s)	41, 98
MaeIII	GTNAC	6 cut(s)	89, 190, 217, 262, 424, 485
MbiI	CCGCTC	1 cut(s)	182
MboII	GAAGA	4 cut(s)	189, 297, 337, 417
MhlI	GDGCHC	3 cut(s)	281, 345, 442
MluCI	AATT	7 cut(s)	25, 31, 61, 83, 158, 282, 537
MlyI	GAGTC	3 cut(s)	65, 140, 493
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	9 cut(s)	164, 192, 201, 243, 246, 261, 307, 334, 370
MroXI	GAANNNNTTC	1 cut(s)	317
MspA1I	CMGCKG	1 cut(s)	458
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	196
MwoI	GCNNNNNNNGC	1 cut(s)	340
NlaIII	CATG	1 cut(s)	433
NlaIV	GGNNCC	1 cut(s)	73
NmuCI	GTSAC	5 cut(s)	89, 217, 262, 424, 485
NspV	TTCGAA	2 cut(s)	232, 348
PciSI	GCTCTTC	3 cut(s)	172, 310, 350
PcsI	WCGNNNNNNNCGW	1 cut(s)	245
PdmI	GAANNNNTTC	1 cut(s)	317
PfeI	GAWTC	2 cut(s)	137, 414
PflFI	GACNNNGTC	1 cut(s)	430
PkrI	GCNGC	3 cut(s)	184, 457, 460
PleI	GAGTC	3 cut(s)	64, 139, 492
PpsI	GAGTC	3 cut(s)	64, 139, 492
Psp124BI	GAGCTC	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	194
PspEI	GGTNACC	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	194
PspN4I	GGNNCC	1 cut(s)	73
PsyI	GACNNNGTC	1 cut(s)	430
PvuII	CAGCTG	1 cut(s)	458
SacI	GAGCTC	1 cut(s)	345
SapI	GCTCTTC	3 cut(s)	172, 310, 350
SatI	GCNGC	3 cut(s)	183, 456, 459
SchI	GAGTC	3 cut(s)	65, 140, 493
ScrFI	CCNGG	1 cut(s)	196
SduI	GDGCHC	3 cut(s)	281, 345, 442
SfuI	TTCGAA	2 cut(s)	232, 348
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
Sse9I	AATT	7 cut(s)	25, 31, 61, 83, 158, 282, 537
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	2 cut(s)	41, 98
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	194
TaaI	ACNGT	2 cut(s)	330, 468
TaqI	TCGA	7 cut(s)	115, 232, 239, 311, 348, 434, 463
TasI	AATT	7 cut(s)	25, 31, 61, 83, 158, 282, 537
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	2 cut(s)	137, 414
TscAI	CASTG	4 cut(s)	94, 222, 267, 333
TseFI	GTSAC	5 cut(s)	89, 217, 262, 424, 485
TseI	GCWGC	2 cut(s)	455, 458
Tsp45I	GTSAC	5 cut(s)	89, 217, 262, 424, 485
TspDTI	ATGAA	2 cut(s)	171, 297
TspRI	CASTG	4 cut(s)	94, 222, 267, 333
Tth111I	GACNNNGTC	1 cut(s)	430
XapI	RAATTY	4 cut(s)	25, 61, 83, 158
XmnI	GAANNNNTTC	1 cut(s)	317
XspI	CTAG	2 cut(s)	41, 98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.