Rh1BG340600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
47451042 .. 47451263
222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG340600.1

Sequence Viewer

Length: 222 bp
ATGACGGCGATAATATCAGGGTCAAATTCCAATTCGGGGCTAGGGTTTGGGGTGGAGTCAAATTCTCAAGGCTCCGGCTCAGTTCTAGCTCCACAAGGGCTTCGGGTTGTTGGGTTGGAGTCCGATTTGGATTCGGATAACGATGAATTCGAAAGCAGAGGTAGAAGAGCGGTGGAGGTTACCAAGAGGCGGATTCGCTGTGGGGAGGTTCACCGGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

7.81

Weight (kDa)

6.56

Isoelectric Point (pI)

56.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 170
AciI CCGC 2 cut(s) 170, 190
AcsI RAATTY 3 cut(s) 25, 61, 146
AfiI CCNNNNNNNGG 2 cut(s) 36, 189
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
ApoI RAATTY 3 cut(s) 25, 61, 146
AsuHPI GGTGA 1 cut(s) 203
AsuII TTCGAA 1 cut(s) 150
BceAI ACGGC 1 cut(s) 21
BfaI CTAG 2 cut(s) 41, 86
BmiI GGNNCC 1 cut(s) 73
Bpu14I TTCGAA 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 51
BsaWI WCCGGW 1 cut(s) 213
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 189
BseLI CCNNNNNNNGG 2 cut(s) 36, 189
BseMII CTCAG 1 cut(s) 93
BsiSI CCGG 2 cut(s) 75, 214
BslI CCNNNNNNNGG 2 cut(s) 36, 189
Bsp119I TTCGAA 1 cut(s) 150
BspACI CCGC 2 cut(s) 170, 190
BspCNI CTCAG 1 cut(s) 92
BspLI GGNNCC 1 cut(s) 73
BspQI GCTCTTC 1 cut(s) 160
BspT104I TTCGAA 1 cut(s) 150
BsrBI CCGCTC 1 cut(s) 170
Bst6I CTCTTC 1 cut(s) 160
BstBI TTCGAA 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 79
BstEII GGTNACC 1 cut(s) 178
BstPI GGTNACC 1 cut(s) 178
CviJI RGCY 5 cut(s) 40, 72, 78, 89, 100
CviKI_1 RGCY 5 cut(s) 40, 72, 78, 89, 100
DdeI CTNAG 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
EciI GGCGGA 1 cut(s) 205
Eco91I GGTNACC 1 cut(s) 178
EcoO65I GGTNACC 1 cut(s) 178
EcoRI GAATTC 1 cut(s) 146
FspBI CTAG 2 cut(s) 41, 86
HapII CCGG 2 cut(s) 75, 214
HinfI GANTC 4 cut(s) 56, 119, 131, 193
HpaII CCGG 2 cut(s) 75, 214
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 2 cut(s) 124, 136
Hpy8I GTNNAC 1 cut(s) 211
HpyF3I CTNAG 1 cut(s) 79
LguI GCTCTTC 1 cut(s) 160
LmnI GCTCC 2 cut(s) 77, 94
LpnPI CCDG 2 cut(s) 3, 88
MaeI CTAG 2 cut(s) 41, 86
MaeIII GTNAC 1 cut(s) 178
MbiI CCGCTC 1 cut(s) 170
MboII GAAGA 1 cut(s) 177
MluCI AATT 4 cut(s) 25, 31, 61, 146
MlyI GAGTC 2 cut(s) 65, 128
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 5 cut(s) 152, 169, 180, 199, 210
MspI CCGG 2 cut(s) 75, 214
NlaIV GGNNCC 1 cut(s) 73
NspV TTCGAA 1 cut(s) 150
PciSI GCTCTTC 1 cut(s) 160
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PfeI GAWTC 2 cut(s) 131, 193
PleI GAGTC 2 cut(s) 64, 127
PpsI GAGTC 2 cut(s) 64, 127
PspEI GGTNACC 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 73
SapI GCTCTTC 1 cut(s) 160
SchI GAGTC 2 cut(s) 65, 128
SetI ASST 5 cut(s) 91, 163, 180, 210, 221
SfuI TTCGAA 1 cut(s) 150
SgeI CNNG 9 cut(s) 30, 48, 53, 80, 87, 98, 107, 116, 196
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
Sse9I AATT 4 cut(s) 25, 31, 61, 146
SsiI CCGC 2 cut(s) 170, 190
SspMI CTAG 2 cut(s) 41, 86
TaqI TCGA 1 cut(s) 150
TasI AATT 4 cut(s) 25, 31, 61, 146
TfiI GAWTC 2 cut(s) 131, 193
TspDTI ATGAA 1 cut(s) 159
XapI RAATTY 3 cut(s) 25, 61, 146
XspI CTAG 2 cut(s) 41, 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.