Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0015759

Physical Location & Seq

Genomic Coordinates Forward (+)

25652484 .. 25657323

Gene Structure 4840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG221800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGACGGCGATGATATCGGGGTCAAATTCCAATTCGGGGGTAGAGTTTGGGGTGGAGTCAAATTCTCAGGGCTCCGGCTCTAAATTCGGTGACTTTCTAGCTCCACAAGGGCTTCGGTGGAGGCGGAAGAGCGGCGGAGGTTACCAGGAGGATGATGAGGTTCTCAAGGACCACGCCGACGAGCCCAATTTCTCGCCTGACCTCAAGCTCTTCGTCGGAAACCTTCCCCTCACTGTTGAGATGGTTGAGGTGATGTATGACAAGACGACTGGAAGAAGCAAGGGACTCGGGTTTCTGACCATGTCGAGTGCTCAGGAAGTAGAAGCAGCTGCTCGACAGTTCAATGTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008187 GO:0008266 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009894 GO:0009895 GO:0009941 GO:0010033 GO:0010319 GO:0010468 GO:0010605 GO:0010608 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043489 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055035 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902369

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

117

Amino Acids

12.71

Weight (kDa)

4.77

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015759)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0026031 RchiOBHm_Chr7g0203031
rosa_multiflora	Rmu_co8054850.1_g000001 Rmu_sc0006847.1_g000017
rosa_roxburghii	Rroxscaffold_1G00038260
rosa_rugosa	Rorug02G0443100
rosa_samantha	Rh1BG340600 Rh1CG353700 Rh1CG388500 Rh1DG371500 Rh1DG405300 Rh5BG221800 Rh5CG198900 Rh5DG181400 Rh7AG202600 Rh7AG275400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	132
AciI	CCGC	3 cut(s)	124, 132, 135
AcsI	RAATTY	3 cut(s)	25, 61, 83
AfiI	CCNNNNNNNGG	1 cut(s)	36
AgsI	TTSAA	1 cut(s)	343
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	3 cut(s)	101, 208, 329
AluI	AGCT	3 cut(s)	101, 208, 329
Alw21I	GWGCWC	1 cut(s)	313
Ama87I	CYCGRG	1 cut(s)	287
ApeKI	GCWGC	2 cut(s)	326, 329
ApoI	RAATTY	3 cut(s)	25, 61, 83
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	2 cut(s)	101, 262
AvaI	CYCGRG	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	169
BanII	GRGCYC	2 cut(s)	74, 186
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	2 cut(s)	316, 338
BccI	CCATC	1 cut(s)	235
BceAI	ACGGC	1 cut(s)	21
BcgI	CGANNNNNNTGC	2 cut(s)	268, 302
BciT130I	CCWGG	1 cut(s)	146
BfaI	CTAG	1 cut(s)	98
BisI	GCNGC	3 cut(s)	133, 327, 330
BlsI	GCNGC	3 cut(s)	134, 328, 331
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	146
Bpu10I	CCTNAGC	1 cut(s)	312
BpuEI	CTTGAG	2 cut(s)	149, 188
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
Bse1I	ACTGG	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	146
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	36
BseMII	CTCAG	2 cut(s)	80, 326
BseNI	ACTGG	1 cut(s)	274
BseXI	GCAGC	2 cut(s)	316, 338
BsiHKAI	GWGCWC	1 cut(s)	313
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	297
BslI	CCNNNNNNNGG	1 cut(s)	36
BsmFI	GGGAC	1 cut(s)	297
BsoBI	CYCGRG	1 cut(s)	287
Bsp1286I	GDGCHC	3 cut(s)	74, 186, 313
BspACI	CCGC	3 cut(s)	124, 132, 135
BspCNI	CTCAG	2 cut(s)	79, 325
BspLI	GGNNCC	1 cut(s)	73
BspQI	GCTCTTC	2 cut(s)	122, 215
BsrBI	CCGCTC	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	274
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	2 cut(s)	235, 339
Bst6I	CTCTTC	2 cut(s)	122, 215
BstDEI	CTNAG	2 cut(s)	66, 312
BstEII	GGTNACC	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	157
BstNI	CCWGG	1 cut(s)	146
BstPI	GGTNACC	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	144
BstV1I	GCAGC	2 cut(s)	316, 338
BtgZI	GCGATG	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	169
CviAII	CATG	1 cut(s)	301
CviJI	RGCY	7 cut(s)	72, 78, 101, 112, 184, 208, 329
CviKI_1	RGCY	7 cut(s)	72, 78, 101, 112, 184, 208, 329
DdeI	CTNAG	2 cut(s)	66, 312
Eam1104I	CTCTTC	2 cut(s)	122, 215
EarI	CTCTTC	2 cut(s)	122, 215
EciI	GGCGGA	2 cut(s)	139, 150
Eco24I	GRGCYC	2 cut(s)	74, 186
Eco32I	GATATC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	169
Eco88I	CYCGRG	1 cut(s)	287
Eco91I	GGTNACC	1 cut(s)	140
EcoO65I	GGTNACC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	144
EcoRV	GATATC	1 cut(s)	15
EcoT38I	GRGCYC	2 cut(s)	74, 186
FaeI	CATG	1 cut(s)	304
FaiI	YATR	2 cut(s)	258, 302
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	1 cut(s)	300
Fnu4HI	GCNGC	3 cut(s)	133, 327, 330
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	2 cut(s)	74, 186
Fsp4HI	GCNGC	3 cut(s)	133, 327, 330
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	3 cut(s)	133, 327, 330
HapII	CCGG	1 cut(s)	75
Hin1II	CATG	1 cut(s)	304
HinfI	GANTC	2 cut(s)	56, 285
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	2 cut(s)	101, 262
Hpy188I	TCNGA	2 cut(s)	218, 297
Hpy188III	TCNNGA	1 cut(s)	314
Hpy99I	CGWCG	2 cut(s)	182, 218
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	2 cut(s)	235, 339
HpyF3I	CTNAG	2 cut(s)	66, 312
Hsp92II	CATG	1 cut(s)	304
LguI	GCTCTTC	2 cut(s)	122, 215
LmnI	GCTCC	2 cut(s)	77, 106
LpnPI	CCDG	7 cut(s)	53, 88, 131, 158, 210, 255, 299
Lsp1109I	GCAGC	2 cut(s)	316, 338
MaeI	CTAG	1 cut(s)	98
MaeIII	GTNAC	2 cut(s)	89, 140
MbiI	CCGCTC	1 cut(s)	132
MboII	GAAGA	3 cut(s)	139, 202, 285
MhlI	GDGCHC	3 cut(s)	74, 186, 313
MluCI	AATT	5 cut(s)	25, 31, 61, 83, 187
MlyI	GAGTC	2 cut(s)	65, 279
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	7 cut(s)	114, 131, 142, 151, 212, 239, 241
MseI	TTAA	1 cut(s)	352
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	146
NlaIII	CATG	1 cut(s)	304
NlaIV	GGNNCC	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	89
PciSI	GCTCTTC	2 cut(s)	122, 215
PflFI	GACNNNGTC	1 cut(s)	301
PkrI	GCNGC	3 cut(s)	134, 328, 331
PleI	GAGTC	2 cut(s)	64, 279
PpsI	GAGTC	2 cut(s)	64, 279
Psp6I	CCWGG	1 cut(s)	144
PspEI	GGTNACC	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	169
PsyI	GACNNNGTC	1 cut(s)	301
PvuII	CAGCTG	1 cut(s)	329
SapI	GCTCTTC	2 cut(s)	122, 215
SaqAI	TTAA	1 cut(s)	352
SatI	GCNGC	3 cut(s)	133, 327, 330
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	2 cut(s)	65, 279
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	3 cut(s)	74, 186, 313
SetI	ASST	8 cut(s)	103, 142, 162, 204, 210, 225, 252, 331
SinI	GGWCC	1 cut(s)	169
SmlI	CTYRAG	2 cut(s)	164, 203
SmoI	CTYRAG	2 cut(s)	164, 203
Sse9I	AATT	5 cut(s)	25, 31, 61, 83, 187
SsiI	CCGC	3 cut(s)	124, 132, 135
SspMI	CTAG	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	144
TaaI	ACNGT	2 cut(s)	235, 339
TaqI	TCGA	2 cut(s)	305, 334
TasI	AATT	5 cut(s)	25, 31, 61, 83, 187
TauI	GCSGC	1 cut(s)	135
Tru1I	TTAA	1 cut(s)	352
Tru9I	TTAA	1 cut(s)	352
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	2 cut(s)	326, 329
Tsp45I	GTSAC	1 cut(s)	89
TspRI	CASTG	1 cut(s)	238
Tth111I	GACNNNGTC	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	169
XapI	RAATTY	3 cut(s)	25, 61, 83
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.