Rmu_co8054850.1_g000001

29 kDa ribonucleoprotein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8054850.1
Physical Location & Seq
Reverse (-)
1 .. 518
518 bp
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UTR
Exon/CDS
Intron
Rmu_co8054850.1_g000001.1.cds

Sequence Viewer

Length: 207 bp
atgagcccaatttctcgtttgaccttaagctcttcgtcggaaaccttcccctcactgtcgctaactgagctcttcaaaggtgctggaaatgttgagatggttgaggtgatatatgacaacacaactaggagaagcaggggattcaggtttgtgaccatgtcgagtgcgcaggaagtagaagcagctgctcgacagttcattggctat

Protein Analysis

69

Amino Acids

7.66

Weight (kDa)

6.16

Isoelectric Point (pI)

70.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 168
AflII CTTAAG 1 cut(s) 25
AgsI TTSAA 1 cut(s) 76
AluBI AGCT 3 cut(s) 30, 70, 185
AluI AGCT 3 cut(s) 30, 70, 185
Alw21I GWGCWC 1 cut(s) 72
ApeKI GCWGC 2 cut(s) 182, 185
AspLEI GCGC 1 cut(s) 169
AsuHPI GGTGA 1 cut(s) 118
BanII GRGCYC 2 cut(s) 8, 72
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 2 cut(s) 172, 194
BccI CCATC 1 cut(s) 91
BfaI CTAG 1 cut(s) 126
BfrI CTTAAG 1 cut(s) 25
BisI GCNGC 2 cut(s) 183, 186
BlsI GCNGC 2 cut(s) 184, 187
BseMII CTCAG 1 cut(s) 57
BseXI GCAGC 2 cut(s) 172, 194
BsiHKAI GWGCWC 1 cut(s) 72
Bsp1286I GDGCHC 2 cut(s) 8, 72
BspCNI CTCAG 1 cut(s) 58
BspQI GCTCTTC 2 cut(s) 37, 77
BspTI CTTAAG 1 cut(s) 25
Bst4CI ACNGT 2 cut(s) 57, 195
Bst6I CTCTTC 2 cut(s) 37, 77
BstAFI CTTAAG 1 cut(s) 25
BstDEI CTNAG 1 cut(s) 66
BstHHI GCGC 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstV1I GCAGC 2 cut(s) 172, 194
BtsIMutI CAGTG 1 cut(s) 53
CfoI GCGC 1 cut(s) 169
CviAII CATG 1 cut(s) 157
CviJI RGCY 5 cut(s) 6, 30, 70, 185, 204
CviKI_1 RGCY 5 cut(s) 6, 30, 70, 185, 204
DdeI CTNAG 1 cut(s) 66
Eam1104I CTCTTC 2 cut(s) 37, 77
EarI CTCTTC 2 cut(s) 37, 77
Ecl136II GAGCTC 1 cut(s) 70
Eco24I GRGCYC 2 cut(s) 8, 72
Eco53kI GAGCTC 1 cut(s) 70
EcoICRI GAGCTC 1 cut(s) 70
EcoT38I GRGCYC 2 cut(s) 8, 72
FaeI CATG 1 cut(s) 160
FaiI YATR 3 cut(s) 112, 114, 158
FatI CATG 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 183, 186
FriOI GRGCYC 2 cut(s) 8, 72
Fsp4HI GCNGC 2 cut(s) 183, 186
FspBI CTAG 1 cut(s) 126
FspI TGCGCA 1 cut(s) 168
GlaI GCGC 1 cut(s) 168
GluI GCNGC 2 cut(s) 183, 186
HhaI GCGC 1 cut(s) 169
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HinfI GANTC 1 cut(s) 141
HphI GGTGA 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 40
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 2 cut(s) 57, 195
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HpyF3I CTNAG 1 cut(s) 66
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 1 cut(s) 167
LguI GCTCTTC 2 cut(s) 37, 77
LpnPI CCDG 4 cut(s) 69, 121, 130, 155
Lsp1109I GCAGC 2 cut(s) 172, 194
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 151
MboII GAAGA 2 cut(s) 24, 64
MhlI GDGCHC 2 cut(s) 8, 72
MluCI AATT 1 cut(s) 9
MmeI TCCRAC 1 cut(s) 18
MnlI CCTC 2 cut(s) 61, 97
MseI TTAA 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 185
MspCI CTTAAG 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 67
NlaIII CATG 1 cut(s) 160
NmuCI GTSAC 1 cut(s) 151
NsbI TGCGCA 1 cut(s) 168
PciSI GCTCTTC 2 cut(s) 37, 77
PfeI GAWTC 1 cut(s) 141
PflFI GACNNNGTC 1 cut(s) 157
PkrI GCNGC 2 cut(s) 184, 187
Psp124BI GAGCTC 1 cut(s) 72
PsyI GACNNNGTC 1 cut(s) 157
PvuII CAGCTG 1 cut(s) 185
SacI GAGCTC 1 cut(s) 72
SapI GCTCTTC 2 cut(s) 37, 77
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 2 cut(s) 183, 186
SduI GDGCHC 2 cut(s) 8, 72
SetI ASST 8 cut(s) 26, 32, 47, 72, 82, 108, 149, 187
SgeI CNNG 9 cut(s) 27, 96, 138, 148, 157, 169, 174, 182, 201
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
Sse9I AATT 1 cut(s) 9
SspMI CTAG 1 cut(s) 126
SstI GAGCTC 1 cut(s) 72
TaaI ACNGT 2 cut(s) 57, 195
TaqI TCGA 2 cut(s) 161, 190
TasI AATT 1 cut(s) 9
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TscAI CASTG 1 cut(s) 60
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 2 cut(s) 182, 185
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 1 cut(s) 187
TspRI CASTG 1 cut(s) 60
Tth111I GACNNNGTC 1 cut(s) 157
Vha464I CTTAAG 1 cut(s) 25
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.