Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0015759

Physical Location & Seq

Genomic Coordinates Reverse (-)

65789653 .. 65796798

Gene Structure 7146 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG388500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGATATCGGGGTCAAATTCCAATTCGGGGCTAGGGTTTGGGGTGGAGTCAAATTCTCAGGGCTCTGGCTCTGAATTCAGTGACTTTCTGGCTCCACAAGGGCTTCAGGTTGTTGGGTTGGAGTCCGATTCGGATTCGAATAACGATGAATTTGAAAGCGGAGGTAGAAGAGTGGCGGAGGTTACCAGGAGGATGAGGAGTGCTCAGCTAACTGAGCTCTTCGAAGGTGCTAGAAATGTTGAGATGGTTGAGGTGATATATGACAAGACGACTGGGAGAAGCAAGAGATTCGGGTTTGTGACCATGTCGAGTGCTCAGGAAGTAGAAGCAGCTGCTCGACAGTTCAATGGCTCTCATGACGGAGGGTCTATTCCGGCTACCATATCAACACTGTTAGCAACTAACGCATCAATTAAACCGATGAACTTCATGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008187 GO:0008266 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009894 GO:0009895 GO:0009941 GO:0010033 GO:0010319 GO:0010468 GO:0010605 GO:0010608 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043489 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055035 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902369

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

145

Amino Acids

15.45

Weight (kDa)

4.75

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	60 - 119	5.8e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015759)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0026031 RchiOBHm_Chr7g0203031
rosa_multiflora	Rmu_co8054850.1_g000001 Rmu_sc0006847.1_g000017
rosa_roxburghii	Rroxscaffold_1G00038260
rosa_rugosa	Rorug02G0443100
rosa_samantha	Rh1BG340600 Rh1CG353700 Rh1CG388500 Rh1DG371500 Rh1DG405300 Rh5BG221800 Rh5CG198900 Rh5DG181400 Rh7AG202600 Rh7AG275400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	159, 176
AcsI	RAATTY	4 cut(s)	16, 52, 74, 149
AcuI	CTGAAG	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	2 cut(s)	155, 346
AhdI	GACNNNNNGTC	1 cut(s)	364
AjnI	CCWGG	1 cut(s)	185
AluBI	AGCT	3 cut(s)	208, 217, 332
AluI	AGCT	3 cut(s)	208, 217, 332
Alw21I	GWGCWC	3 cut(s)	205, 219, 316
ApeKI	GCWGC	2 cut(s)	329, 332
ApoI	RAATTY	4 cut(s)	16, 52, 74, 149
AsuHPI	GGTGA	1 cut(s)	265
AsuII	TTCGAA	2 cut(s)	137, 222
BanII	GRGCYC	2 cut(s)	65, 219
Bbv12I	GWGCWC	3 cut(s)	205, 219, 316
BbvI	GCAGC	2 cut(s)	319, 341
BccI	CCATC	1 cut(s)	238
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciT130I	CCWGG	1 cut(s)	187
BfaI	CTAG	2 cut(s)	32, 231
BisI	GCNGC	2 cut(s)	330, 333
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	2 cut(s)	331, 334
Bme1390I	CCNGG	1 cut(s)	187
BmeRI	GACNNNNNGTC	1 cut(s)	364
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	1 cut(s)	187
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	1 cut(s)	416
BmuI	ACTGGG	1 cut(s)	282
BplI	GAGNNNNNCTC	2 cut(s)	187, 219
Bpu10I	CCTNAGC	1 cut(s)	315
Bpu1102I	GCTNAGC	1 cut(s)	204
Bpu14I	TTCGAA	2 cut(s)	137, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	187
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	4 cut(s)	71, 204, 218, 329
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	1 cut(s)	211
BseXI	GCAGC	2 cut(s)	319, 341
BsiHKAI	GWGCWC	3 cut(s)	205, 219, 316
BsiSI	CCGG	1 cut(s)	374
BslI	CCNNNNNNNGG	1 cut(s)	27
Bsp119I	TTCGAA	2 cut(s)	137, 222
Bsp1286I	GDGCHC	4 cut(s)	65, 205, 219, 316
Bsp1720I	GCTNAGC	1 cut(s)	204
BspACI	CCGC	2 cut(s)	159, 176
BspCNI	CTCAG	4 cut(s)	70, 205, 217, 328
BspHI	TCATGA	2 cut(s)	355, 429
BspLI	GGNNCC	1 cut(s)	93
BspQI	GCTCTTC	1 cut(s)	224
BspT104I	TTCGAA	2 cut(s)	137, 222
BsrI	ACTGG	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	2 cut(s)	342, 393
Bst6I	CTCTTC	2 cut(s)	163, 224
BstBI	TTCGAA	2 cut(s)	137, 222
BstDEI	CTNAG	4 cut(s)	57, 204, 213, 315
BstEII	GGTNACC	1 cut(s)	181
BstF5I	GGATG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	2 cut(s)	214, 404
BstNI	CCWGG	1 cut(s)	187
BstPI	GGTNACC	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	185
BstV1I	GCAGC	2 cut(s)	319, 341
BtsCI	GGATG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	85, 389
CciI	TCATGA	2 cut(s)	355, 429
CviAII	CATG	3 cut(s)	304, 356, 430
DdeI	CTNAG	4 cut(s)	57, 204, 213, 315
DriI	GACNNNNNGTC	1 cut(s)	364
Eam1104I	CTCTTC	2 cut(s)	163, 224
Eam1105I	GACNNNNNGTC	1 cut(s)	364
EarI	CTCTTC	2 cut(s)	163, 224
EciI	GGCGGA	1 cut(s)	191
Ecl136II	GAGCTC	1 cut(s)	217
Eco24I	GRGCYC	2 cut(s)	65, 219
Eco32I	GATATC	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	89
Eco91I	GGTNACC	1 cut(s)	181
EcoICRI	GAGCTC	1 cut(s)	217
EcoO65I	GGTNACC	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	185
EcoRV	GATATC	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	65, 219
FaeI	CATG	3 cut(s)	307, 359, 433
FaiI	YATR	6 cut(s)	259, 261, 305, 357, 383, 431
FatI	CATG	3 cut(s)	303, 355, 429
Fnu4HI	GCNGC	2 cut(s)	330, 333
FokI	GGATG	1 cut(s)	205
FriOI	GRGCYC	2 cut(s)	65, 219
Fsp4HI	GCNGC	2 cut(s)	330, 333
FspBI	CTAG	2 cut(s)	32, 231
GluI	GCNGC	2 cut(s)	330, 333
HapII	CCGG	1 cut(s)	374
Hin1II	CATG	3 cut(s)	307, 359, 433
HinfI	GANTC	5 cut(s)	47, 122, 128, 134, 288
HpaII	CCGG	1 cut(s)	374
HphI	GGTGA	1 cut(s)	265
Hpy188I	TCNGA	3 cut(s)	73, 127, 133
Hpy188III	TCNNGA	3 cut(s)	317, 356, 430
HpyAV	CCTTC	1 cut(s)	218
HpyCH4III	ACNGT	2 cut(s)	342, 393
HpyF10VI	GCNNNNNNNGC	2 cut(s)	214, 404
HpyF3I	CTNAG	4 cut(s)	57, 204, 213, 315
Hsp92II	CATG	3 cut(s)	307, 359, 433
LguI	GCTCTTC	1 cut(s)	224
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	9 cut(s)	44, 51, 74, 92, 172, 199, 258, 302, 387
Lsp1109I	GCAGC	2 cut(s)	319, 341
LweI	GCATC	1 cut(s)	416
MaeI	CTAG	2 cut(s)	32, 231
MaeIII	GTNAC	3 cut(s)	80, 181, 298
MboII	GAAGA	2 cut(s)	180, 211
MhlI	GDGCHC	4 cut(s)	65, 205, 219, 316
MluCI	AATT	6 cut(s)	16, 22, 52, 74, 149, 411
MlyI	GAGTC	2 cut(s)	56, 131
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	6 cut(s)	155, 172, 183, 189, 244, 356
MseI	TTAA	1 cut(s)	414
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	2 cut(s)	214, 404
NlaIII	CATG	3 cut(s)	307, 359, 433
NlaIV	GGNNCC	1 cut(s)	93
NmuCI	GTSAC	2 cut(s)	80, 298
NspV	TTCGAA	2 cut(s)	137, 222
PagI	TCATGA	2 cut(s)	355, 429
PciSI	GCTCTTC	1 cut(s)	224
PfeI	GAWTC	3 cut(s)	128, 134, 288
PflFI	GACNNNGTC	1 cut(s)	304
PkrI	GCNGC	2 cut(s)	331, 334
PleI	GAGTC	2 cut(s)	55, 130
PpsI	GAGTC	2 cut(s)	55, 130
Psp124BI	GAGCTC	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	185
PspEI	GGTNACC	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	93
PsyI	GACNNNGTC	1 cut(s)	304
PvuII	CAGCTG	1 cut(s)	332
SacI	GAGCTC	1 cut(s)	219
SapI	GCTCTTC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	2 cut(s)	330, 333
SchI	GAGTC	2 cut(s)	56, 131
ScrFI	CCNGG	1 cut(s)	187
SduI	GDGCHC	4 cut(s)	65, 205, 219, 316
SetI	ASST	8 cut(s)	111, 166, 183, 210, 219, 229, 255, 334
SfaNI	GCATC	1 cut(s)	416
SfuI	TTCGAA	2 cut(s)	137, 222
Sse9I	AATT	6 cut(s)	16, 22, 52, 74, 149, 411
SsiI	CCGC	2 cut(s)	159, 176
SspMI	CTAG	2 cut(s)	32, 231
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	185
TaaI	ACNGT	2 cut(s)	342, 393
TaqI	TCGA	4 cut(s)	137, 222, 308, 337
TasI	AATT	6 cut(s)	16, 22, 52, 74, 149, 411
TfiI	GAWTC	3 cut(s)	128, 134, 288
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	2 cut(s)	85, 396
TseFI	GTSAC	2 cut(s)	80, 298
TseI	GCWGC	2 cut(s)	329, 332
Tsp45I	GTSAC	2 cut(s)	80, 298
TspDTI	ATGAA	3 cut(s)	162, 418, 437
TspGWI	ACGGA	1 cut(s)	375
TspRI	CASTG	2 cut(s)	85, 396
Tth111I	GACNNNGTC	1 cut(s)	304
XapI	RAATTY	4 cut(s)	16, 52, 74, 149
XspI	CTAG	2 cut(s)	32, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.