Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0015759

Physical Location & Seq

Genomic Coordinates Forward (+)

55698542 .. 55699121

Gene Structure 580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00038260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCGAATGTTAAGGGAGAGAGAGGCGGAAGTGGTCGGGTTCGATTCGCGGTTCGGATCGGGTGATGATGGTGATGATATCGGGGTCAAATTCCAATTTGGGGCTAGGGTTTGGGGTGGAGCCAAATTCTCGGGGCTCCGGCTCGAATTCGGTGACTTTCTTGCTCCACGAGGGCTTCGGGTTGTTGGGTTGGAGTCCGATTCGGATTCGGTTAACGATGAATTCGAAAGTGGAGGTAGAAGAGTGGCGGAGGTTACTAGGATGATGAGGAGGTTCTTAGCGACGACGCCGGCGAGCCCAATTTCTCGCCGACCTCAAGCTCTTCATCGGAAACCTTCCCTTCTTGTCGACGGTGCTCGGCTAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

13.5

Weight (kDa)

9.65

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015759)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0026031 RchiOBHm_Chr7g0203031
rosa_multiflora	Rmu_co8054850.1_g000001 Rmu_sc0006847.1_g000017
rosa_roxburghii	Rroxscaffold_1G00038260
rosa_rugosa	Rorug02G0443100
rosa_samantha	Rh1BG340600 Rh1CG353700 Rh1CG388500 Rh1DG371500 Rh1DG405300 Rh5BG221800 Rh5CG198900 Rh5DG181400 Rh7AG202600 Rh7AG275400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	348
AccII	CGCG	1 cut(s)	49
AciI	CCGC	3 cut(s)	26, 49, 248
AclWI	GGATC	1 cut(s)	64
AcsI	RAATTY	4 cut(s)	89, 125, 146, 221
AcyI	GRCGYC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	100
AluBI	AGCT	1 cut(s)	320
AluI	AGCT	1 cut(s)	320
Alw21I	GWGCWC	1 cut(s)	358
AlwI	GGATC	1 cut(s)	64
Ama87I	CYCGRG	1 cut(s)	130
ApoI	RAATTY	4 cut(s)	89, 125, 146, 221
AsuHPI	GGTGA	3 cut(s)	74, 83, 164
AsuII	TTCGAA	1 cut(s)	225
AvaI	CYCGRG	1 cut(s)	130
BanII	GRGCYC	2 cut(s)	138, 299
BauI	CACGAG	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	358
BccI	CCATC	1 cut(s)	62
BfaI	CTAG	2 cut(s)	105, 258
BmeT110I	CYCGRG	1 cut(s)	130
BmiI	GGNNCC	2 cut(s)	121, 137
Bpu14I	TTCGAA	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	300
BsaHI	GRCGYC	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse118I	RCCGGY	1 cut(s)	289
BseGI	GGATG	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	283
Bsh1236I	CGCG	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	358
BsiHKCI	CYCGRG	1 cut(s)	130
BsiSI	CCGG	2 cut(s)	139, 290
BslI	CCNNNNNNNGG	1 cut(s)	100
BsoBI	CYCGRG	1 cut(s)	130
Bsp119I	TTCGAA	1 cut(s)	225
Bsp1286I	GDGCHC	3 cut(s)	138, 299, 358
Bsp143I	GATC	1 cut(s)	56
BspACI	CCGC	3 cut(s)	26, 49, 248
BspFNI	CGCG	1 cut(s)	49
BspLI	GGNNCC	2 cut(s)	121, 137
BspPI	GGATC	1 cut(s)	64
BspQI	GCTCTTC	1 cut(s)	327
BspT104I	TTCGAA	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	289
BssMI	GATC	1 cut(s)	56
BssNI	GRCGYC	1 cut(s)	287
BssSI	CACGAG	1 cut(s)	168
Bst2BI	CACGAG	1 cut(s)	168
Bst4CI	ACNGT	1 cut(s)	353
Bst6I	CTCTTC	2 cut(s)	235, 327
BstACI	GRCGYC	1 cut(s)	287
BstBI	TTCGAA	1 cut(s)	225
BstC8I	GCNNGC	2 cut(s)	291, 295
BstDEI	CTNAG	2 cut(s)	277, 366
BstF5I	GGATG	1 cut(s)	267
BstFNI	CGCG	1 cut(s)	49
BstKTI	GATC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	56
BstUI	CGCG	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	267
Cac8I	GCNNGC	2 cut(s)	291, 295
Cfr10I	RCCGGY	1 cut(s)	289
CseI	GACGC	1 cut(s)	295
CviJI	RGCY	8 cut(s)	104, 122, 136, 142, 175, 297, 320, 361
CviKI_1	RGCY	8 cut(s)	104, 122, 136, 142, 175, 297, 320, 361
DdeI	CTNAG	2 cut(s)	277, 366
DpnI	GATC	1 cut(s)	58
DpnII	GATC	1 cut(s)	56
Eam1104I	CTCTTC	2 cut(s)	235, 327
EarI	CTCTTC	2 cut(s)	235, 327
EciI	GGCGGA	2 cut(s)	41, 263
Eco24I	GRGCYC	2 cut(s)	138, 299
Eco32I	GATATC	1 cut(s)	79
Eco88I	CYCGRG	1 cut(s)	130
EcoRI	GAATTC	2 cut(s)	146, 221
EcoRV	GATATC	1 cut(s)	79
EcoT38I	GRGCYC	2 cut(s)	138, 299
FblI	GTMKAC	1 cut(s)	348
FokI	GGATG	1 cut(s)	274
FriOI	GRGCYC	2 cut(s)	138, 299
FspBI	CTAG	2 cut(s)	105, 258
HapII	CCGG	2 cut(s)	139, 290
HgaI	GACGC	1 cut(s)	295
Hin1I	GRCGYC	1 cut(s)	287
HincII	GTYRAC	2 cut(s)	214, 349
HindII	GTYRAC	2 cut(s)	214, 349
HinfI	GANTC	4 cut(s)	44, 194, 200, 206
HpaI	GTTAAC	1 cut(s)	214
HpaII	CCGG	2 cut(s)	139, 290
HphI	GGTGA	3 cut(s)	74, 83, 164
Hpy166II	GTNNAC	2 cut(s)	214, 349
Hpy188I	TCNGA	4 cut(s)	56, 199, 205, 330
Hpy8I	GTNNAC	2 cut(s)	214, 349
Hpy99I	CGWCG	3 cut(s)	286, 289, 353
HpyAV	CCTTC	2 cut(s)	345, 350
HpyCH4III	ACNGT	1 cut(s)	353
HpyF3I	CTNAG	2 cut(s)	277, 366
Hsp92I	GRCGYC	1 cut(s)	287
KroI	GCCGGC	1 cut(s)	289
KroNI	GCCGGC	1 cut(s)	291
KspAI	GTTAAC	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	56
LguI	GCTCTTC	1 cut(s)	327
LmnI	GCTCC	3 cut(s)	119, 141, 169
LpnPI	CCDG	2 cut(s)	152, 303
MaeI	CTAG	2 cut(s)	105, 258
MaeIII	GTNAC	2 cut(s)	152, 253
MalI	GATC	1 cut(s)	58
MboI	GATC	1 cut(s)	56
MboII	GAAGA	2 cut(s)	252, 314
MhlI	GDGCHC	3 cut(s)	138, 299, 358
MluCI	AATT	6 cut(s)	89, 95, 125, 146, 221, 300
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	7 cut(s)	16, 164, 227, 244, 261, 264, 324
MreI	CGCCGGCG	1 cut(s)	289
MroNI	GCCGGC	1 cut(s)	289
MseI	TTAA	2 cut(s)	11, 213
MspI	CCGG	2 cut(s)	139, 290
MvnI	CGCG	1 cut(s)	49
NaeI	GCCGGC	1 cut(s)	291
NdeII	GATC	1 cut(s)	56
NgoMIV	GCCGGC	1 cut(s)	289
NlaIV	GGNNCC	2 cut(s)	121, 137
NmeAIII	GCCGAG	1 cut(s)	337
NmuCI	GTSAC	1 cut(s)	152
NspV	TTCGAA	1 cut(s)	225
PciSI	GCTCTTC	1 cut(s)	327
PcsI	WCGNNNNNNNCGW	2 cut(s)	222, 290
PdiI	GCCGGC	1 cut(s)	291
PfeI	GAWTC	3 cut(s)	44, 200, 206
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PspN4I	GGNNCC	2 cut(s)	121, 137
SalI	GTCGAC	1 cut(s)	347
SapI	GCTCTTC	1 cut(s)	327
SaqAI	TTAA	2 cut(s)	11, 213
Sau3AI	GATC	1 cut(s)	56
SchI	GAGTC	1 cut(s)	203
SduI	GDGCHC	3 cut(s)	138, 299, 358
SetI	ASST	6 cut(s)	238, 255, 275, 316, 322, 337
SfuI	TTCGAA	1 cut(s)	225
SgrAI	CRCCGGYG	1 cut(s)	289
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
Sse9I	AATT	6 cut(s)	89, 95, 125, 146, 221, 300
SsiI	CCGC	3 cut(s)	26, 49, 248
SspMI	CTAG	2 cut(s)	105, 258
TaaI	ACNGT	1 cut(s)	353
TaqI	TCGA	4 cut(s)	42, 144, 225, 348
TasI	AATT	6 cut(s)	89, 95, 125, 146, 221, 300
TfiI	GAWTC	3 cut(s)	44, 200, 206
Tru1I	TTAA	2 cut(s)	11, 213
Tru9I	TTAA	2 cut(s)	11, 213
TseFI	GTSAC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	2 cut(s)	234, 314
XapI	RAATTY	4 cut(s)	89, 125, 146, 221
XmiI	GTMKAC	1 cut(s)	348
XspI	CTAG	2 cut(s)	105, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.