Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005455

Physical Location & Seq

Genomic Coordinates Reverse (-)

21536414 .. 21538557

Gene Structure 2144 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGACCTGACAGAGATGGCTGCTTGCCTGGTCAACCCGTCTCTTCTTCTCATGAAGAAAAAGTCAACAGTCTCACAACTGAATCCACGTTGCGAGGAGGATGCCGAAAAATACGCATTCCCATTTCATACTGGGACTAATGTATCAGAGGCTTCAAAGGCAGTCTTGGCATATGAGAAGGCAGAAGAGATTTTGCGCCGGAGTTTGACATTGATAGGACAGAGTTGCTTACATTTGGTTCAAATTCATCATGCACAGAGAGTTCGGTGGATGGTAGTTTGGATAAAGAACTTGAACCTCAGGGAGATACTTTGGAAATTAAAAGAATCAATGCAGTCAGATGTAAGACAAGCAGCTGTGTGGAATACTCTTGGTTTGATACTACTTAAAACCGGTACATTTGCCATTTCGGTATTGTCATCTTTGTTAGCAGTTGCCCATACCAACTATGATTGCCTTGCAAACCTTGAAATTGCTTACCTTCAAAGTGGATATTTGGCGATTTTCAGTGGATATTTGGAACTGTCAAAAAATTGTTTCCAGGAGTTGATCCTCAAAGATCAAAATCATCCCACCGCCTTGATCAATTATGCTGCCCTTCTTTTATGTAGATATGGTTGTTGCAGAGTGCTGCTTTATCATCATAATGCGCTGGTCAAAGAACCTGCATCATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000291 GO:0000785 GO:0000956 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0035327 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0055087 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_19 TPR_2 TPR_7 TPR_8

Protein Analysis

225

Amino Acids

25.42

Weight (kDa)

8.38

Isoelectric Point (pI)

51.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63200 AT5G63200
fragaria_vesca	FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030
malus_domestica	MD06G1160400.v1.1
prunus_persica	Prupe.5G160000_v2.0.a1
pyrus_communis	pycom06g14350
rosa_chinensis	RchiOBHm_Chr5g0027621 RchiOBHm_Chr5g0027631 RchiOBHm_Chr7g0191501
rosa_laevigata	RLG00000004443
rosa_multiflora	Rmu_co8226669.1_g000001 Rmu_sc0002661.1_g000013 Rmu_sc0010599.1_g000002
rosa_roxburghii	Rroxscaffold_157G00438440 Rroxscaffold_3G00263740
rosa_rugosa	Rorug05G0100300 Rorug06G0510500
rosa_samantha	Rh5CG212600 Rh5DG194500 Rh7AG118900 Rh7BG121000 Rh7CG123700 Rh7DG121800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	673
AciI	CCGC	1 cut(s)	576
AclWI	GGATC	1 cut(s)	544
AcsI	RAATTY	1 cut(s)	243
AfaI	GTAC	1 cut(s)	397
AgeI	ACCGGT	1 cut(s)	392
AgsI	TTSAA	5 cut(s)	156, 242, 295, 470, 485
AjnI	CCWGG	2 cut(s)	27, 540
AluBI	AGCT	1 cut(s)	356
AluI	AGCT	1 cut(s)	356
Alw26I	GTCTC	2 cut(s)	45, 76
AlwI	GGATC	1 cut(s)	544
ApeKI	GCWGC	4 cut(s)	20, 353, 593, 631
ApoI	RAATTY	1 cut(s)	243
AsiGI	ACCGGT	1 cut(s)	392
AspLEI	GCGC	2 cut(s)	198, 652
AspS9I	GGNCC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	4
AxyI	CCTNAGG	1 cut(s)	299
BaeI	ACNNNNGTAYC	2 cut(s)	126, 159
BbvI	GCAGC	4 cut(s)	7, 365, 580, 618
BccI	CCATC	2 cut(s)	10, 265
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BciT130I	CCWGG	2 cut(s)	29, 542
BclI	TGATCA	1 cut(s)	582
BcoDI	GTCTC	2 cut(s)	45, 76
BfuAI	ACCTGC	1 cut(s)	673
BisI	GCNGC	4 cut(s)	21, 354, 594, 632
BlsI	GCNGC	4 cut(s)	22, 355, 595, 633
Bme1390I	CCNGG	2 cut(s)	29, 542
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	2 cut(s)	29, 542
BmrI	ACTGGG	1 cut(s)	141
BmsI	GCATC	1 cut(s)	91
BmuI	ACTGGG	1 cut(s)	141
BsaBI	GATNNNNATC	1 cut(s)	564
BsaWI	WCCGGW	1 cut(s)	392
Bse118I	RCCGGY	1 cut(s)	392
Bse1I	ACTGG	1 cut(s)	136
Bse21I	CCTNAGG	1 cut(s)	299
Bse8I	GATNNNNATC	1 cut(s)	564
BseBI	CCWGG	2 cut(s)	29, 542
BseGI	GGATG	3 cut(s)	106, 276, 568
BseJI	GATNNNNATC	1 cut(s)	564
BseMII	CTCAG	1 cut(s)	313
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	4 cut(s)	7, 365, 580, 618
BshTI	ACCGGT	1 cut(s)	392
BsiSI	CCGG	2 cut(s)	199, 393
BslFI	GGGAC	1 cut(s)	148
BsmAI	GTCTC	2 cut(s)	45, 76
BsmBI	CGTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	148
BsmI	GAATGC	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	549, 559, 582
BspACI	CCGC	1 cut(s)	576
BspCNI	CTCAG	1 cut(s)	312
BspHI	TCATGA	1 cut(s)	51
BspMI	ACCTGC	1 cut(s)	673
BspPI	GGATC	1 cut(s)	544
BsrFI	RCCGGY	1 cut(s)	392
BsrI	ACTGG	1 cut(s)	136
BssAI	RCCGGY	1 cut(s)	392
BssMI	GATC	3 cut(s)	549, 559, 582
Bst2UI	CCWGG	2 cut(s)	29, 542
Bst4CI	ACNGT	2 cut(s)	70, 525
Bst6I	CTCTTC	2 cut(s)	48, 180
BstC8I	GCNNGC	1 cut(s)	25
BstDEI	CTNAG	1 cut(s)	299
BstF5I	GGATG	3 cut(s)	106, 276, 568
BstHHI	GCGC	2 cut(s)	198, 652
BstKTI	GATC	3 cut(s)	552, 562, 585
BstMAI	GTCTC	2 cut(s)	45, 76
BstMBI	GATC	3 cut(s)	549, 559, 582
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 167
BstNI	CCWGG	2 cut(s)	29, 542
BstSCI	CCNGG	2 cut(s)	27, 540
BstV1I	GCAGC	4 cut(s)	7, 365, 580, 618
Bsu36I	CCTNAGG	1 cut(s)	299
BtsCI	GGATG	3 cut(s)	106, 276, 568
BtsIMutI	CAGTG	1 cut(s)	514
BveI	ACCTGC	1 cut(s)	673
Cac8I	GCNNGC	1 cut(s)	25
CciI	TCATGA	1 cut(s)	51
CfoI	GCGC	2 cut(s)	198, 652
Cfr10I	RCCGGY	1 cut(s)	392
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	396
CspAI	ACCGGT	1 cut(s)	392
CviAII	CATG	2 cut(s)	52, 251
CviJI	RGCY	3 cut(s)	20, 152, 356
CviKI_1	RGCY	3 cut(s)	20, 152, 356
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	3 cut(s)	551, 561, 584
DpnII	GATC	3 cut(s)	549, 559, 582
Eam1104I	CTCTTC	2 cut(s)	48, 180
EarI	CTCTTC	2 cut(s)	48, 180
Eco47I	GGWCC	1 cut(s)	4
Eco81I	CCTNAGG	1 cut(s)	299
EcoRII	CCWGG	2 cut(s)	27, 540
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	2 cut(s)	55, 254
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	2 cut(s)	51, 250
FauNDI	CATATG	1 cut(s)	172
FbaI	TGATCA	1 cut(s)	582
Fnu4HI	GCNGC	4 cut(s)	21, 354, 594, 632
FokI	GGATG	3 cut(s)	113, 283, 555
Fsp4HI	GCNGC	4 cut(s)	21, 354, 594, 632
GlaI	GCGC	2 cut(s)	197, 651
GluI	GCNGC	4 cut(s)	21, 354, 594, 632
HapII	CCGG	2 cut(s)	199, 393
HhaI	GCGC	2 cut(s)	198, 652
Hin1II	CATG	2 cut(s)	55, 254
Hin6I	GCGC	2 cut(s)	196, 650
HinP1I	GCGC	2 cut(s)	196, 650
HincII	GTYRAC	2 cut(s)	34, 66
HindII	GTYRAC	2 cut(s)	34, 66
HinfI	GANTC	2 cut(s)	82, 326
HpaII	CCGG	2 cut(s)	199, 393
Hpy166II	GTNNAC	2 cut(s)	34, 66
Hpy188I	TCNGA	2 cut(s)	148, 340
Hpy188III	TCNNGA	1 cut(s)	52
Hpy8I	GTNNAC	2 cut(s)	34, 66
HpyAV	CCTTC	3 cut(s)	172, 491, 608
HpyCH4III	ACNGT	2 cut(s)	70, 525
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	5 cut(s)	254, 334, 461, 624, 668
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 167
HpyF3I	CTNAG	1 cut(s)	299
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	2 cut(s)	55, 254
HspAI	GCGC	2 cut(s)	196, 650
Ksp22I	TGATCA	1 cut(s)	582
Kzo9I	GATC	3 cut(s)	549, 559, 582
Lsp1109I	GCAGC	4 cut(s)	7, 365, 580, 618
LweI	GCATC	1 cut(s)	91
MaeII	ACGT	1 cut(s)	88
MalI	GATC	3 cut(s)	551, 561, 584
MboI	GATC	3 cut(s)	549, 559, 582
MboII	GAAGA	4 cut(s)	35, 38, 67, 197
MluCI	AATT	5 cut(s)	243, 317, 471, 532, 586
MnlI	CCTC	5 cut(s)	88, 91, 142, 308, 563
MseI	TTAA	2 cut(s)	320, 387
MslI	CAYNNNNRTG	1 cut(s)	645
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	2 cut(s)	199, 393
MspR9I	CCNGG	2 cut(s)	29, 542
Mva1269I	GAATGC	1 cut(s)	116
MvaI	CCWGG	2 cut(s)	29, 542
MwoI	GCNNNNNNNGC	2 cut(s)	158, 167
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	3 cut(s)	549, 559, 582
NlaIII	CATG	2 cut(s)	55, 254
PagI	TCATGA	1 cut(s)	51
PctI	GAATGC	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	82, 326
PfoI	TCCNGGA	1 cut(s)	540
PinAI	ACCGGT	1 cut(s)	392
PkrI	GCNGC	4 cut(s)	22, 355, 595, 633
Psp6I	CCWGG	2 cut(s)	27, 540
PspGI	CCWGG	2 cut(s)	27, 540
PspPI	GGNCC	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
RseI	CAYNNNNRTG	1 cut(s)	645
SaqAI	TTAA	2 cut(s)	320, 387
SatI	GCNGC	4 cut(s)	21, 354, 594, 632
Sau3AI	GATC	3 cut(s)	549, 559, 582
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	29, 542
SetI	ASST	7 cut(s)	9, 91, 300, 358, 468, 483, 667
SfaNI	GCATC	1 cut(s)	91
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	645
Sse9I	AATT	5 cut(s)	243, 317, 471, 532, 586
SsiI	CCGC	1 cut(s)	576
StyD4I	CCNGG	2 cut(s)	27, 540
TaaI	ACNGT	2 cut(s)	70, 525
TaiI	ACGT	1 cut(s)	91
TasI	AATT	5 cut(s)	243, 317, 471, 532, 586
TfiI	GAWTC	2 cut(s)	82, 326
Tru1I	TTAA	2 cut(s)	320, 387
Tru9I	TTAA	2 cut(s)	320, 387
TscAI	CASTG	1 cut(s)	514
TseI	GCWGC	4 cut(s)	20, 353, 593, 631
TspDTI	ATGAA	3 cut(s)	68, 116, 236
TspRI	CASTG	1 cut(s)	514
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.