RchiOBHm_Chr5g0033651

Plant organelle RNA recognition domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
27531038 .. 27532739
1702 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1302 bp
ATGAACATCTTCTTCACCTATTCCTCCCATTTCCTCAAACCCAGCTCCAAAACCCTCCACCCCATCCCTCTCCTCCTCCACAACCTCACCTCCACCAGACCCATCTCCAAATCCACCTCCATCCCCAAGAAAATGGACCGCGTCCGCGACCACGGCTACGACAACTACATGGAAATCGAGAAGAAGATCCGCAAAGTCCTCAAATTCCAGGCCCTCATTCTCTCCCAGCCCCACCAGATCATCCAAGCCTCTCGCCTCGACATGCTCGCCCGCCGCCTCGGCTTCAAGCAGCACGAGGCCGCCGCCTTCGTCCTCAAGTTCCCTCACGAGAAGCGGGCCCTGGCGGCCCAGGTCCCCGACGCCGTGACCCGGCTCAGGAAGCTGGTGATGATGTCCAACACGGGTCGGATCCGGCTCGAGCATGTTCGGATTGCCAGGTATGAATTCGGGCTACCCGATGATTTCGAATACTCTGTAGTTCTCAAGTACCCTGAGTATTTCAGATTGTTTGATGCTGATGAGAGTAGGAGTAAGTACATTGAGGTAGTTGAGAAGGACCCAAGTTTATCTGTTTGTGCTATAGAGAAGCTTAGGGAGAGAGAGTATAGGGAGAAGGGGGTTGATGCTGAGGATATAAGGTTTTCATTCATTGTGAATTTTCCGCCGGGGTTTAAGATAGGGAAGTATTATAGGATTGCGGTGTGGAAATGGCAGAGAGTGCCGTATTGGAGTCCTTATGAGGATGTTTCGGGGTATGACATGAGGTCGCTTGAGGCGCAGAAGAGGATGGAGAAGAGGGCCGTGGCGGTGATTCATGAGCTGTTGAATTTGACCGTGGAGAAGAAGATTACGTTGGAGAGGATTGCGCATTTTAGAATGGCGATGAATCTGCCGAAGAAGTTGAAGGAGTTTCTTCTGCAGCATCAGGGGATTTTCTACATTTCGACTAGGGGGAATCACGGGAAGCTGCATACGGTGTTTCTTAGGGAGGCTTATAGGAAGGGTGAGTTGGTAGAGCCGAATGATTTGTATTTGGCGAGAAGAAAGTTGGCTGAGTTGGTGTTGATGAGCCCAAGGAAGGCGAAAATGGATAGTGAATTGGTTAGTTACCATAGAGACTGGGGAGATGATGAGAGGGGGTTCGTTGGAAGAGAATGTGTTGAGAATGCTTTTGAAGATTTTGGGGGTTGCAATGATGATAGGCAGAGGAGGGACTCAAATGCGGGTGATGATTATGACTCCGATACAGACGATGGTTCTGATAAAACTCTGGATGAAAAGGATGTCTGTGTAACGGATTGA

Protein Analysis

433

Amino Acids

50.77

Weight (kDa)

9.01

Isoelectric Point (pI)

36.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 48 - 109 1.5e-10 Plant organelle RNA recognition domain
PORR PF11955 110 - 358 3.4e-86 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 867
AccII CGCG 2 cut(s) 141, 147
AclWI GGATC 3 cut(s) 181, 403, 416
AcsI RAATTY 4 cut(s) 203, 443, 655, 826
AcyI GRCGYC 1 cut(s) 360
AfaI GTAC 2 cut(s) 488, 536
AfiI CCNNNNNNNGG 3 cut(s) 369, 375, 1078
AgsI TTSAA 4 cut(s) 286, 826, 904, 1175
AhdI GACNNNNNGTC 1 cut(s) 763
AjnI CCWGG 4 cut(s) 207, 339, 348, 434
AjuI GAANNNNNNNTTGG 4 cut(s) 836, 868, 992, 1024
AluBI AGCT 5 cut(s) 45, 382, 589, 820, 967
AluI AGCT 5 cut(s) 45, 382, 589, 820, 967
Alw26I GTCTC 1 cut(s) 1110
AlwI GGATC 3 cut(s) 181, 403, 416
Ama87I CYCGRG 1 cut(s) 416
AoxI GGCC 5 cut(s) 210, 297, 336, 345, 798
ApaI GGGCCC 1 cut(s) 340
ApeKI GCWGC 3 cut(s) 289, 919, 967
ApoI RAATTY 4 cut(s) 203, 443, 655, 826
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 2 cut(s) 778, 868
AspS9I GGNCC 8 cut(s) 136, 211, 336, 337, 346, 352, 556, 798
AsuC2I CCSGG 2 cut(s) 370, 666
AsuHPI GGTGA 6 cut(s) 7, 79, 397, 820, 1016, 1238
AsuII TTCGAA 1 cut(s) 465
AvaI CYCGRG 1 cut(s) 416
AvaII GGWCC 3 cut(s) 136, 352, 556
BaeGI GKGCMC 1 cut(s) 340
BamHI GGATCC 1 cut(s) 408
BanII GRGCYC 2 cut(s) 340, 1073
BauI CACGAG 2 cut(s) 293, 326
BbvCI CCTCAGC 1 cut(s) 627
BbvI GCAGC 3 cut(s) 301, 931, 954
BccI CCATC 5 cut(s) 71, 110, 128, 781, 1247
BceAI ACGGC 4 cut(s) 169, 347, 706, 785
BcgI CGANNNNNNTGC 2 cut(s) 871, 905
BciT130I CCWGG 4 cut(s) 209, 341, 350, 436
BcnI CCSGG 2 cut(s) 370, 666
BcoDI GTCTC 1 cut(s) 1110
BfaI CTAG 1 cut(s) 948
BfmI CTRYAG 3 cut(s) 474, 579, 917
BglI GCCNNNNNGGC 2 cut(s) 279, 344
BisI GCNGC 7 cut(s) 274, 290, 300, 303, 345, 920, 968
BlsI GCNGC 7 cut(s) 275, 291, 301, 304, 346, 921, 969
Bme1390I CCNGG 6 cut(s) 209, 341, 350, 370, 436, 666
Bme18I GGWCC 3 cut(s) 136, 352, 556
BmeRI GACNNNNNGTC 1 cut(s) 763
BmeT110I CYCGRG 1 cut(s) 416
BmgT120I GGNCC 8 cut(s) 136, 211, 336, 337, 346, 352, 556, 798
BmiI GGNNCC 4 cut(s) 338, 354, 410, 558
BmrFI CCNGG 6 cut(s) 209, 341, 350, 370, 436, 666
BmrI ACTGGG 1 cut(s) 1129
BmsI GCATC 3 cut(s) 502, 613, 931
BmuI ACTGGG 1 cut(s) 1129
Bpu10I CCTNAGC 3 cut(s) 374, 590, 627
Bpu14I TTCGAA 1 cut(s) 465
BpuEI CTTGAG 3 cut(s) 299, 467, 791
BpuMI CCSGG 2 cut(s) 370, 666
BsaHI GRCGYC 1 cut(s) 360
BsaJI CCNNGG 8 cut(s) 151, 277, 339, 348, 665, 801, 834, 1073
BsaXI ACNNNNNCTCC 4 cut(s) 74, 104, 587, 617
Bsc4I CCNNNNNNNGG 3 cut(s) 369, 375, 1078
Bse1I ACTGG 1 cut(s) 1124
Bse3DI GCAATG 1 cut(s) 1198
BseBI CCWGG 4 cut(s) 209, 341, 350, 436
BseDI CCNNGG 8 cut(s) 151, 277, 339, 348, 665, 801, 834, 1073
BseGI GGATG 7 cut(s) 63, 120, 240, 748, 792, 1279, 1288
BseLI CCNNNNNNNGG 3 cut(s) 369, 375, 1078
BseMI GCAATG 1 cut(s) 1198
BseMII CTCAG 4 cut(s) 388, 483, 618, 1044
BseNI ACTGG 1 cut(s) 1124
BseRI GAGGAG 3 cut(s) 62, 65, 1222
BseSI GKGCMC 1 cut(s) 340
BseXI GCAGC 3 cut(s) 301, 931, 954
BseYI CCCAGC 2 cut(s) 41, 225
Bsh1236I CGCG 2 cut(s) 141, 147
BshFI GGCC 5 cut(s) 212, 299, 338, 347, 800
BsiHKCI CYCGRG 1 cut(s) 416
BsiSI CCGG 3 cut(s) 370, 412, 665
BslFI GGGAC 2 cut(s) 338, 1226
BslI CCNNNNNNNGG 3 cut(s) 369, 375, 1078
BsmAI GTCTC 1 cut(s) 1110
BsmFI GGGAC 2 cut(s) 338, 1226
BsmI GAATGC 1 cut(s) 1171
BsnI GGCC 5 cut(s) 212, 299, 338, 347, 800
BsoBI CYCGRG 1 cut(s) 416
Bsp119I TTCGAA 1 cut(s) 465
Bsp120I GGGCCC 1 cut(s) 336
Bsp1286I GDGCHC 2 cut(s) 340, 1073
Bsp143I GATC 3 cut(s) 186, 237, 408
BspANI GGCC 5 cut(s) 212, 299, 338, 347, 800
BspCNI CTCAG 4 cut(s) 387, 484, 619, 1045
BspFNI CGCG 2 cut(s) 141, 147
BspHI TCATGA 1 cut(s) 814
BspLI GGNNCC 4 cut(s) 338, 354, 410, 558
BspMAI CTGCAG 1 cut(s) 921
BspPI GGATC 3 cut(s) 181, 403, 416
BspT104I TTCGAA 1 cut(s) 465
BsrDI GCAATG 1 cut(s) 1198
BsrI ACTGG 1 cut(s) 1124
BssECI CCNNGG 8 cut(s) 151, 277, 339, 348, 665, 801, 834, 1073
BssMI GATC 3 cut(s) 186, 237, 408
BssNI GRCGYC 1 cut(s) 360
BssSI CACGAG 2 cut(s) 293, 326
BssT1I CCWWGG 1 cut(s) 1073
Bst2BI CACGAG 2 cut(s) 293, 326
Bst2UI CCWGG 4 cut(s) 209, 341, 350, 436
Bst4CI ACNGT 2 cut(s) 835, 976
Bst6I CTCTTC 3 cut(s) 776, 788, 1144
BstACI GRCGYC 1 cut(s) 360
BstAPI GCANNNNNTGC 1 cut(s) 718
BstBI TTCGAA 1 cut(s) 465
BstC8I GCNNGC 3 cut(s) 267, 271, 336
BstDEI CTNAG 6 cut(s) 374, 492, 590, 627, 983, 1053
BstDSI CCRYGG 3 cut(s) 151, 801, 834
BstF5I GGATG 7 cut(s) 63, 120, 240, 748, 792, 1279, 1288
BstFNI CGCG 2 cut(s) 141, 147
BstHHI GCGC 2 cut(s) 778, 868
BstKTI GATC 3 cut(s) 189, 240, 411
BstMAI GTCTC 1 cut(s) 1110
BstMBI GATC 3 cut(s) 186, 237, 408
BstMWI GCNNNNNNNGC 6 cut(s) 153, 279, 344, 379, 718, 775
BstNI CCWGG 4 cut(s) 209, 341, 350, 436
BstNSI RCATGY 2 cut(s) 265, 425
BstSCI CCNGG 6 cut(s) 207, 339, 348, 368, 434, 664
BstSFI CTRYAG 3 cut(s) 474, 579, 917
BstSLI GKGCMC 1 cut(s) 340
BstUI CGCG 2 cut(s) 141, 147
BstV1I GCAGC 3 cut(s) 301, 931, 954
BstX2I RGATCY 2 cut(s) 186, 408
BstXI CCANNNNNNTGG 1 cut(s) 133
BstYI RGATCY 2 cut(s) 186, 408
BsuRI GGCC 5 cut(s) 212, 299, 338, 347, 800
BtgI CCRYGG 3 cut(s) 151, 801, 834
BtgZI GCGATG 1 cut(s) 896
BtsCI GGATG 7 cut(s) 63, 120, 240, 748, 792, 1279, 1288
Cac8I GCNNGC 3 cut(s) 267, 271, 336
CciI TCATGA 1 cut(s) 814
CfoI GCGC 2 cut(s) 778, 868
Cfr13I GGNCC 8 cut(s) 136, 211, 336, 337, 346, 352, 556, 798
CseI GACGC 2 cut(s) 130, 368
Csp6I GTAC 2 cut(s) 487, 535
CviAII CATG 5 cut(s) 169, 262, 422, 760, 815
CviQI GTAC 2 cut(s) 487, 535
DdeI CTNAG 6 cut(s) 374, 492, 590, 627, 983, 1053
DpnI GATC 3 cut(s) 188, 239, 410
DpnII GATC 3 cut(s) 186, 237, 408
DriI GACNNNNNGTC 1 cut(s) 763
Eam1104I CTCTTC 3 cut(s) 776, 788, 1144
Eam1105I GACNNNNNGTC 1 cut(s) 763
EarI CTCTTC 3 cut(s) 776, 788, 1144
EciI GGCGGA 1 cut(s) 651
Eco130I CCWWGG 1 cut(s) 1073
Eco24I GRGCYC 2 cut(s) 340, 1073
Eco47I GGWCC 3 cut(s) 136, 352, 556
Eco88I CYCGRG 1 cut(s) 416
EcoO109I RGGNCCY 4 cut(s) 211, 337, 352, 556
EcoRI GAATTC 1 cut(s) 443
EcoRII CCWGG 4 cut(s) 207, 339, 348, 434
EcoT14I CCWWGG 1 cut(s) 1073
EcoT38I GRGCYC 2 cut(s) 340, 1073
ErhI CCWWGG 1 cut(s) 1073
FaeI CATG 5 cut(s) 172, 265, 425, 763, 818
FaqI GGGAC 2 cut(s) 338, 1226
FatI CATG 5 cut(s) 168, 261, 421, 759, 814
FauI CCCGC 3 cut(s) 278, 327, 1216
Fnu4HI GCNGC 7 cut(s) 274, 290, 300, 303, 345, 920, 968
FokI GGATG 7 cut(s) 50, 107, 227, 755, 799, 1286, 1295
FriOI GRGCYC 2 cut(s) 340, 1073
Fsp4HI GCNGC 7 cut(s) 274, 290, 300, 303, 345, 920, 968
FspBI CTAG 1 cut(s) 948
FspI TGCGCA 1 cut(s) 867
GlaI GCGC 2 cut(s) 777, 867
GluI GCNGC 7 cut(s) 274, 290, 300, 303, 345, 920, 968
GsaI CCCAGC 2 cut(s) 45, 229
HaeIII GGCC 5 cut(s) 212, 299, 338, 347, 800
HapII CCGG 3 cut(s) 370, 412, 665
HgaI GACGC 2 cut(s) 130, 368
HhaI GCGC 2 cut(s) 778, 868
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 5 cut(s) 172, 265, 425, 763, 818
Hin6I GCGC 2 cut(s) 776, 866
HinP1I GCGC 2 cut(s) 776, 866
HindIII AAGCTT 1 cut(s) 587
HinfI GANTC 6 cut(s) 730, 811, 886, 955, 1214, 1238
HpaII CCGG 3 cut(s) 370, 412, 665
HphI GGTGA 6 cut(s) 7, 79, 397, 820, 1016, 1238
Hpy188I TCNGA 5 cut(s) 408, 429, 503, 1243, 1261
Hpy188III TCNNGA 5 cut(s) 178, 326, 376, 815, 1271
Hpy99I CGWCG 1 cut(s) 362
HpyAV CCTTC 6 cut(s) 316, 547, 607, 898, 994, 1072
HpyCH4III ACNGT 2 cut(s) 835, 976
HpyCH4IV ACGT 1 cut(s) 851
HpyCH4V TGCA 3 cut(s) 919, 970, 1191
HpyF10VI GCNNNNNNNGC 6 cut(s) 153, 279, 344, 379, 718, 775
HpyF3I CTNAG 6 cut(s) 374, 492, 590, 627, 983, 1053
HpySE526I ACGT 1 cut(s) 851
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 5 cut(s) 172, 265, 425, 763, 818
HspAI GCGC 2 cut(s) 776, 866
Kzo9I GATC 3 cut(s) 186, 237, 408
LmnI GCTCC 1 cut(s) 50
Lsp1109I GCAGC 3 cut(s) 301, 931, 954
LweI GCATC 3 cut(s) 502, 613, 931
MaeI CTAG 1 cut(s) 948
MaeII ACGT 1 cut(s) 851
MaeIII GTNAC 3 cut(s) 364, 1106, 1291
MalI GATC 3 cut(s) 188, 239, 410
MboI GATC 3 cut(s) 186, 237, 408
MflI RGATCY 2 cut(s) 186, 408
MhlI GDGCHC 2 cut(s) 340, 1073
MluCI AATT 5 cut(s) 203, 443, 655, 826, 1097
MlyI GAGTC 3 cut(s) 739, 1208, 1232
MmeI TCCRAC 4 cut(s) 386, 420, 834, 1126
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 1 cut(s) 672
MspI CCGG 3 cut(s) 370, 412, 665
MspR9I CCNGG 6 cut(s) 209, 341, 350, 370, 436, 666
Mva1269I GAATGC 1 cut(s) 1171
MvaI CCWGG 4 cut(s) 209, 341, 350, 436
MvnI CGCG 2 cut(s) 141, 147
MwoI GCNNNNNNNGC 6 cut(s) 153, 279, 344, 379, 718, 775
NciI CCSGG 2 cut(s) 370, 666
NdeII GATC 3 cut(s) 186, 237, 408
NlaIII CATG 5 cut(s) 172, 265, 425, 763, 818
NlaIV GGNNCC 4 cut(s) 338, 354, 410, 558
NmeAIII GCCGAG 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 364
NsbI TGCGCA 1 cut(s) 867
NspI RCATGY 2 cut(s) 265, 425
NspV TTCGAA 1 cut(s) 465
PaeR7I CTCGAG 1 cut(s) 416
PagI TCATGA 1 cut(s) 814
PcsI WCGNNNNNNNCGW 1 cut(s) 453
PctI GAATGC 1 cut(s) 1171
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 3 cut(s) 811, 886, 955
PflFI GACNNNGTC 1 cut(s) 140
PkrI GCNGC 7 cut(s) 275, 291, 301, 304, 346, 921, 969
PleI GAGTC 3 cut(s) 738, 1208, 1232
PpsI GAGTC 3 cut(s) 738, 1208, 1232
PpuMI RGGWCCY 2 cut(s) 352, 556
Psp5II RGGWCCY 2 cut(s) 352, 556
Psp6I CCWGG 4 cut(s) 207, 339, 348, 434
PspFI CCCAGC 2 cut(s) 41, 225
PspGI CCWGG 4 cut(s) 207, 339, 348, 434
PspN4I GGNNCC 4 cut(s) 338, 354, 410, 558
PspOMI GGGCCC 1 cut(s) 336
PspPI GGNCC 8 cut(s) 136, 211, 336, 337, 346, 352, 556, 798
PspPPI RGGWCCY 2 cut(s) 352, 556
PspXI VCTCGAGB 1 cut(s) 416
PstI CTGCAG 1 cut(s) 921
PsuI RGATCY 2 cut(s) 186, 408
PsyI GACNNNGTC 1 cut(s) 140
RsaI GTAC 2 cut(s) 488, 536
RsaNI GTAC 2 cut(s) 487, 535
SaqAI TTAA 1 cut(s) 672
SatI GCNGC 7 cut(s) 274, 290, 300, 303, 345, 920, 968
Sau3AI GATC 3 cut(s) 186, 237, 408
Sau96I GGNCC 8 cut(s) 136, 211, 336, 337, 346, 352, 556, 798
SchI GAGTC 3 cut(s) 739, 1208, 1232
ScrFI CCNGG 6 cut(s) 209, 341, 350, 370, 436, 666
SduI GDGCHC 2 cut(s) 340, 1073
SfaNI GCATC 3 cut(s) 502, 613, 931
SfcI CTRYAG 3 cut(s) 474, 579, 917
SfiI GGCCNNNNNGGCC 1 cut(s) 344
Sfr274I CTCGAG 1 cut(s) 416
SfuI TTCGAA 1 cut(s) 465
SinI GGWCC 3 cut(s) 136, 352, 556
SlaI CTCGAG 1 cut(s) 416
SmlI CTYRAG 4 cut(s) 314, 416, 482, 770
SmoI CTYRAG 4 cut(s) 314, 416, 482, 770
Sse9I AATT 5 cut(s) 203, 443, 655, 826, 1097
SspMI CTAG 1 cut(s) 948
StyD4I CCNGG 6 cut(s) 207, 339, 348, 368, 434, 664
StyI CCWWGG 1 cut(s) 1073
TaaI ACNGT 2 cut(s) 835, 976
TaiI ACGT 1 cut(s) 854
TaqI TCGA 5 cut(s) 177, 258, 417, 465, 944
TasI AATT 5 cut(s) 203, 443, 655, 826, 1097
TatI WGTACW 1 cut(s) 534
TauI GCSGC 4 cut(s) 276, 302, 305, 347
TfiI GAWTC 3 cut(s) 811, 886, 955
Tru1I TTAA 1 cut(s) 672
Tru9I TTAA 1 cut(s) 672
TseFI GTSAC 1 cut(s) 364
TseI GCWGC 3 cut(s) 289, 919, 967
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 7 cut(s) 17, 456, 633, 637, 803, 899, 1290
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 3 cut(s) 136, 352, 556
XapI RAATTY 4 cut(s) 203, 443, 655, 826
XceI RCATGY 2 cut(s) 265, 425
XhoI CTCGAG 1 cut(s) 416
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.