Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005933

Physical Location & Seq

Genomic Coordinates Forward (+)

32035031 .. 32035728

Gene Structure 698 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCTACAGTGGATAAGATTGTGTAAGGCATTCTTGGTAGAAGCACAATGGTTTAGGCGTGGGGAGTTGCCAAACTCCGGAGATTACTTGAAGAATGGGATTATCAGTTCAGGGGTGCCTGCATTTTTAACCCACGCCTTCTGTATTATTGGTCAAGGTATGATCAAGGAAACCATAGATCTTTTCAACAACATCAACTTACCTAGTATCGTGTCTTCAACGGCCATGATACTTCGGCTATGGGATGACTTTGGAACTGCCAAGGATGAGGACCAAAATGGGTTTGATGGATCATACATAGAGTGCTACATGAAAGAACACAAAGGCTCTTCTGTTGAAGAGGTGCAAGCATATGTAATCCAAAAGATTTCAGATGAGTGGAAGTGCCTCAACCAAGAATGCTTCTCTGCTTGCAATCCATTTTCAGAGTCCTTTACACAATTCGCTCTCAATATTTCTAGAATGGTTCCCATGATGTACGATTACAATGCCCATCATTGTCTTCCAAGCCTTGAGGAGAATATGAAGTCGTTGCTTTCGGATAGTTTTCTTGCCAAAGGCATCTACGGGAAACCCATGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009987 GO:0010333 GO:0010334 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031347 GO:0034007 GO:0042214 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043692 GO:0043693 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046246 GO:0046872 GO:0048583 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051761 GO:0051762 GO:0065007 GO:0071704 GO:0080013 GO:0080134 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00902 ko00909 ko01100 ko01110 ko01130 map00902 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

194

Amino Acids

22.09

Weight (kDa)

5.07

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	3 - 128	2.3e-31	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	3 - 128	1.9e-25	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005933)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g30650
rosa_chinensis	RchiOBHm_Chr5g0037521
rosa_laevigata	RLG00000008452 RLG00000008453 RLG00000008456 RLG00000008459 RLG00000008462 RLG00000008465 RLG00000008469 RLG00000008472 RLG00000008475 RLG00000008478 RLG00000008481 RLG00000008484 RLG00000008487 RLG00000008490
rosa_multiflora	Rmu_sc0000365.1_g000040 Rmu_sc0002210.1_g000006 Rmu_sc0002521.1_g000037
rosa_roxburghii	Rroxscaffold_1G00043490 Rroxscaffold_1G00043560 Rroxscaffold_5G00354900 Rroxscaffold_5G00354930
rosa_samantha	Rh4AG159200 Rh4AG159400 Rh4CG170600 Rh5AG254700 Rh5CG290000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	115
AccIII	TCCGGA	1 cut(s)	77
AclWI	GGATC	1 cut(s)	298
AcoI	YGGCCR	1 cut(s)	222
AfaI	GTAC	1 cut(s)	479
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	4 cut(s)	91, 187, 219, 338
AloI	GAACNNNNNNTCC	2 cut(s)	91, 123
AlwI	GGATC	1 cut(s)	298
Aor13HI	TCCGGA	1 cut(s)	77
AoxI	GGCC	1 cut(s)	222
AspS9I	GGNCC	1 cut(s)	271
AvaII	GGWCC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	115
BarI	GAAGNNNNNNTAC	2 cut(s)	199, 231
BbsI	GAAGAC	2 cut(s)	207, 494
BccI	CCATC	2 cut(s)	281, 501
BceAI	ACGGC	1 cut(s)	237
BcgI	CGANNNNNNTGC	2 cut(s)	470, 504
BclI	TGATCA	1 cut(s)	162
BfaI	CTAG	2 cut(s)	204, 459
BfmI	CTRYAG	1 cut(s)	5
BglII	AGATCT	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	2 cut(s)	117, 468
BmsI	GCATC	1 cut(s)	570
BpiI	GAAGAC	2 cut(s)	207, 494
BpuEI	CTTGAG	1 cut(s)	533
BsaJI	CCNNGG	1 cut(s)	261
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
BseAI	TCCGGA	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	2 cut(s)	250, 271
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	530
BshFI	GGCC	1 cut(s)	224
BshNI	GGYRCC	1 cut(s)	115
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmI	GAATGC	2 cut(s)	29, 404
BsnI	GGCC	1 cut(s)	224
Bsp13I	TCCGGA	1 cut(s)	77
Bsp143I	GATC	3 cut(s)	162, 178, 290
BspANI	GGCC	1 cut(s)	224
BspEI	TCCGGA	1 cut(s)	77
BspLI	GGNNCC	2 cut(s)	117, 468
BspPI	GGATC	1 cut(s)	298
BspQI	GCTCTTC	1 cut(s)	334
BspT107I	GGYRCC	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	3 cut(s)	162, 178, 290
BssT1I	CCWWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	9
Bst6I	CTCTTC	2 cut(s)	333, 334
BstC8I	GCNNGC	3 cut(s)	120, 348, 412
BstF5I	GGATG	2 cut(s)	250, 271
BstKTI	GATC	3 cut(s)	165, 181, 293
BstMBI	GATC	3 cut(s)	162, 178, 290
BstSFI	CTRYAG	1 cut(s)	5
BstV2I	GAAGAC	2 cut(s)	207, 494
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	224
BtsCI	GGATG	2 cut(s)	250, 271
BtsIMutI	CAGTG	1 cut(s)	14
Cac8I	GCNNGC	3 cut(s)	120, 348, 412
Cfr13I	GGNCC	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	478
CviAII	CATG	4 cut(s)	226, 310, 472, 577
CviJI	RGCY	4 cut(s)	224, 238, 327, 510
CviKI_1	RGCY	4 cut(s)	224, 238, 327, 510
CviQI	GTAC	1 cut(s)	478
DpnI	GATC	3 cut(s)	164, 180, 292
DpnII	GATC	3 cut(s)	162, 178, 290
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	2 cut(s)	333, 334
EarI	CTCTTC	2 cut(s)	333, 334
Eco130I	CCWWGG	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	4 cut(s)	229, 313, 475, 580
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FatI	CATG	4 cut(s)	225, 309, 471, 576
FauNDI	CATATG	1 cut(s)	352
FbaI	TGATCA	1 cut(s)	162
FokI	GGATG	2 cut(s)	257, 278
FspBI	CTAG	2 cut(s)	204, 459
HaeIII	GGCC	1 cut(s)	224
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	4 cut(s)	229, 313, 475, 580
HinfI	GANTC	1 cut(s)	428
HpaII	CCGG	1 cut(s)	78
Hpy188I	TCNGA	3 cut(s)	373, 427, 541
Hpy188III	TCNNGA	2 cut(s)	78, 459
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4V	TGCA	4 cut(s)	122, 346, 414, 580
Hsp92II	CATG	4 cut(s)	229, 313, 475, 580
Kpn2I	TCCGGA	1 cut(s)	77
Ksp22I	TGATCA	1 cut(s)	162
Kzo9I	GATC	3 cut(s)	162, 178, 290
LguI	GCTCTTC	1 cut(s)	334
LpnPI	CCDG	3 cut(s)	91, 96, 132
LweI	GCATC	1 cut(s)	570
MaeI	CTAG	2 cut(s)	204, 459
MalI	GATC	3 cut(s)	164, 180, 292
MboI	GATC	3 cut(s)	162, 178, 290
MboII	GAAGA	5 cut(s)	103, 207, 321, 350, 494
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	1 cut(s)	440
MlyI	GAGTC	1 cut(s)	437
MnlI	CCTC	4 cut(s)	262, 334, 398, 508
MroI	TCCGGA	1 cut(s)	77
MseI	TTAA	1 cut(s)	128
MspI	CCGG	1 cut(s)	78
Mva1269I	GAATGC	2 cut(s)	29, 404
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	3 cut(s)	162, 178, 290
NlaIII	CATG	4 cut(s)	229, 313, 475, 580
NlaIV	GGNNCC	2 cut(s)	117, 468
PciSI	GCTCTTC	1 cut(s)	334
PctI	GAATGC	2 cut(s)	29, 404
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
PspN4I	GGNNCC	2 cut(s)	117, 468
PspPI	GGNCC	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
SapI	GCTCTTC	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	128
Sau3AI	GATC	3 cut(s)	162, 178, 290
Sau96I	GGNCC	1 cut(s)	271
SchI	GAGTC	1 cut(s)	437
SetI	ASST	3 cut(s)	160, 205, 345
SfaNI	GCATC	1 cut(s)	570
SfcI	CTRYAG	1 cut(s)	5
SinI	GGWCC	1 cut(s)	271
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	1 cut(s)	440
SspI	AATATT	1 cut(s)	454
SspMI	CTAG	2 cut(s)	204, 459
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	9
TasI	AATT	1 cut(s)	440
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
TscAI	CASTG	1 cut(s)	14
TspDTI	ATGAA	2 cut(s)	326, 539
TspRI	CASTG	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	271
XbaI	TCTAGA	1 cut(s)	458
XspI	CTAG	2 cut(s)	204, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.