RchiOBHm_Chr5g0046861

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0015196
Physical Location & Seq
Reverse (-)
43088819 .. 43091433
2615 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 990 bp
ATGAAAATGTCTAGCAGAGCTCATCTAGTGGCAGTAGGGATATTTGGGCTCATATTTGTAAGCCTTACAGGGCAGTGCTATGGGGCACTAGAGGTAGGGTTCTACGAGAGAAAGTGCCTTGCTGATGTTGAAAAAGTAGTAGCTGATGTAGTCAAGGCAAAGTACAAAATGGACCGAACAATTGCTGCTGCTCTCGTTCGCATGCAGTTCCACGATTGCTTTGTGAATGGATGTGATGCGTCCATTCTACTAGATGGAAGCTCCAGTGAGAAAACAGCTCCTCCGAATCTCAGTGTACGGGGTTATGATGTCATTGATGCCGCAAAAGCTGCAGTCGAAGTTGTATGCCCAGGAAAGGTCTCCTGCTCGGATATCATTGTAATGGCTACCAGAGAAGCTGTATGCCTGAGTGGAGGAGGGCGATACAGTGTTCAAACTGGGAGAAGAGATGGCTTTGTATCTCTTGCATCAAATGTTGATCTCCCAGCTCCATCAATTTCAGTGAATCAATCTGTTGCAGCATTTGCTAGAAAAGGACTCAATGCCATTGACATGGTTTATCTTCTTGGCGGTCACACCATTGGGGTGGCACATTGTTTTCTCTTCCAAGACCGTCTATACAATTTCCAAAACACTGGCGGACCTGACCGGAGCATGGATTCATCATTGCTGCAAAAGCTGAGATCTATCTGCCCTCAAAATTCAGCAGGCAGTAAAACTGCTGATCTTGACCAGAACGAGTACGTACCAAGTTCGTTCATTGTTGACAACTCATTCTACAAGCAAATACGAGCCAGGAGAGGAGTTCTTCAAATAGACCAAGAGCTAGCTTTCGACCCCATAACTCAGTCCACAGTGACAACAATTGCCAATAGTTTTGGCTTCTCCGCGAAATTTGGGCAGGCCATGGTTAAGTTGGGAGCAGTGGGAGTACTTACAGGCACGCAAGGGGAGATCAGGAAATCATGCAGAGCAGTTAACACTCCTTGA

Protein Analysis

329

Amino Acids

35.25

Weight (kDa)

8.63

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 47 - 292 5.4e-79 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015196)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22410
fragaria_vesca FvH4_3g25270
malus_domestica MD03G1147900.v1.1
prunus_persica Prupe.6G132800_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046861
rosa_laevigata RLG00000034451
rosa_multiflora Rmu_sc0002264.1_g000029
rosa_roxburghii Rroxscaffold_1G00034520
rosa_rugosa Rorug05G0232300
rosa_samantha Rh1BG405200 Rh1DG435700 Rh5AG311600 Rh5BG320600 Rh5CG346700 Rh5DG331300
rosa_wichuraiana Rw5G029120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 890
AciI CCGC 4 cut(s) 321, 570, 639, 888
AcsI RAATTY 2 cut(s) 700, 893
AfaI GTAC 5 cut(s) 164, 297, 743, 747, 933
AfiI CCNNNNNNNGG 2 cut(s) 355, 655
AgsI TTSAA 3 cut(s) 131, 434, 812
AjnI CCWGG 2 cut(s) 349, 794
Alw21I GWGCWC 1 cut(s) 22
Alw26I GTCTC 1 cut(s) 364
AoxI GGCC 1 cut(s) 903
ApeKI GCWGC 5 cut(s) 185, 188, 329, 518, 670
ApoI RAATTY 2 cut(s) 700, 893
AspS9I GGNCC 2 cut(s) 172, 641
AsuNHI GCTAGC 1 cut(s) 826
AvaII GGWCC 2 cut(s) 172, 641
BaeGI GKGCMC 1 cut(s) 88
BanII GRGCYC 2 cut(s) 22, 51
Bbv12I GWGCWC 1 cut(s) 22
BbvI GCAGC 5 cut(s) 172, 175, 316, 530, 657
BccI CCATC 3 cut(s) 248, 443, 499
BciT130I CCWGG 2 cut(s) 351, 796
BcoDI GTCTC 1 cut(s) 364
BfaI CTAG 6 cut(s) 12, 26, 89, 251, 528, 827
BfmI CTRYAG 1 cut(s) 330
BglII AGATCT 1 cut(s) 683
BisI GCNGC 6 cut(s) 186, 189, 321, 330, 519, 671
BlsI GCNGC 6 cut(s) 187, 190, 322, 331, 520, 672
BmcAI AGTACT 1 cut(s) 933
Bme1390I CCNGG 2 cut(s) 351, 796
Bme18I GGWCC 2 cut(s) 172, 641
BmgT120I GGNCC 2 cut(s) 172, 641
BmrFI CCNGG 2 cut(s) 351, 796
BmrI ACTGGG 1 cut(s) 447
BmsI GCATC 3 cut(s) 226, 307, 476
BmtI GCTAGC 1 cut(s) 830
BmuI ACTGGG 1 cut(s) 447
BpmI CTGGAG 1 cut(s) 247
BsaAI YACGTR 1 cut(s) 745
BsaI GGTCTC 1 cut(s) 364
BsaJI CCNNGG 2 cut(s) 349, 906
BsaWI WCCGGW 1 cut(s) 648
BsaXI ACNNNNNCTCC 2 cut(s) 265, 295
Bsc4I CCNNNNNNNGG 2 cut(s) 355, 655
Bse1I ACTGG 3 cut(s) 264, 442, 640
Bse3DI GCAATG 1 cut(s) 665
BseBI CCWGG 2 cut(s) 351, 796
BseDI CCNNGG 2 cut(s) 349, 906
BseGI GGATG 1 cut(s) 236
BseLI CCNNNNNNNGG 2 cut(s) 355, 655
BseMI GCAATG 1 cut(s) 665
BseMII CTCAG 4 cut(s) 304, 398, 671, 860
BseNI ACTGG 3 cut(s) 264, 442, 640
BseRI GAGGAG 3 cut(s) 270, 429, 816
BseSI GKGCMC 1 cut(s) 88
BseXI GCAGC 5 cut(s) 172, 175, 316, 530, 657
BseYI CCCAGC 1 cut(s) 484
Bsh1236I CGCG 1 cut(s) 890
BshFI GGCC 1 cut(s) 905
BsiHKAI GWGCWC 1 cut(s) 22
BsiSI CCGG 1 cut(s) 649
BslI CCNNNNNNNGG 2 cut(s) 355, 655
BsmAI GTCTC 1 cut(s) 364
BsnI GGCC 1 cut(s) 905
Bso31I GGTCTC 1 cut(s) 364
Bsp1286I GDGCHC 3 cut(s) 22, 51, 88
Bsp143I GATC 4 cut(s) 478, 683, 724, 954
Bsp19I CCATGG 1 cut(s) 906
BspACI CCGC 4 cut(s) 321, 570, 639, 888
BspANI GGCC 1 cut(s) 905
BspCNI CTCAG 4 cut(s) 303, 399, 672, 859
BspFNI CGCG 1 cut(s) 890
BspMAI CTGCAG 1 cut(s) 334
BspOI GCTAGC 1 cut(s) 830
BspTNI GGTCTC 1 cut(s) 364
BsrDI GCAATG 1 cut(s) 665
BsrI ACTGG 3 cut(s) 264, 442, 640
BssECI CCNNGG 2 cut(s) 349, 906
BssMI GATC 4 cut(s) 478, 683, 724, 954
BssT1I CCWWGG 1 cut(s) 906
Bst2UI CCWGG 2 cut(s) 351, 796
Bst4CI ACNGT 3 cut(s) 428, 614, 856
Bst6I CTCTTC 2 cut(s) 439, 608
BstAPI GCANNNNNTGC 2 cut(s) 329, 524
BstBAI YACGTR 1 cut(s) 745
BstC8I GCNNGC 5 cut(s) 203, 709, 828, 903, 944
BstDEI CTNAG 4 cut(s) 290, 407, 680, 846
BstDSI CCRYGG 1 cut(s) 906
BstF5I GGATG 1 cut(s) 236
BstFNI CGCG 1 cut(s) 890
BstKTI GATC 4 cut(s) 481, 686, 727, 957
BstMAI GTCTC 1 cut(s) 364
BstMBI GATC 4 cut(s) 478, 683, 724, 954
BstMWI GCNNNNNNNGC 4 cut(s) 326, 329, 524, 676
BstNI CCWGG 2 cut(s) 351, 796
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 2 cut(s) 349, 794
BstSFI CTRYAG 1 cut(s) 330
BstSLI GKGCMC 1 cut(s) 88
BstSNI TACGTA 1 cut(s) 745
BstUI CGCG 1 cut(s) 890
BstV1I GCAGC 5 cut(s) 172, 175, 316, 530, 657
BstX2I RGATCY 1 cut(s) 683
BstXI CCANNNNNNTGG 3 cut(s) 553, 586, 635
BstYI RGATCY 1 cut(s) 683
BsuRI GGCC 1 cut(s) 905
BtgI CCRYGG 1 cut(s) 906
BtsCI GGATG 1 cut(s) 236
BtsI GCAGTG 2 cut(s) 80, 930
BtsIMutI CAGTG 8 cut(s) 80, 271, 298, 433, 507, 633, 861, 930
Cac8I GCNNGC 5 cut(s) 203, 709, 828, 903, 944
Cfr13I GGNCC 2 cut(s) 172, 641
CseI GACGC 1 cut(s) 228
Csp6I GTAC 5 cut(s) 163, 296, 742, 746, 932
CviAII CATG 5 cut(s) 202, 553, 655, 907, 966
CviQI GTAC 5 cut(s) 163, 296, 742, 746, 932
DdeI CTNAG 4 cut(s) 290, 407, 680, 846
DpnI GATC 4 cut(s) 480, 685, 726, 956
DpnII GATC 4 cut(s) 478, 683, 724, 954
Eam1104I CTCTTC 2 cut(s) 439, 608
EarI CTCTTC 2 cut(s) 439, 608
EciI GGCGGA 1 cut(s) 654
Ecl136II GAGCTC 1 cut(s) 20
Eco105I TACGTA 1 cut(s) 745
Eco130I CCWWGG 1 cut(s) 906
Eco24I GRGCYC 2 cut(s) 22, 51
Eco31I GGTCTC 1 cut(s) 364
Eco32I GATATC 1 cut(s) 373
Eco47I GGWCC 2 cut(s) 172, 641
Eco53kI GAGCTC 1 cut(s) 20
EcoICRI GAGCTC 1 cut(s) 20
EcoRII CCWGG 2 cut(s) 349, 794
EcoRV GATATC 1 cut(s) 373
EcoT14I CCWWGG 1 cut(s) 906
EcoT38I GRGCYC 2 cut(s) 22, 51
ErhI CCWWGG 1 cut(s) 906
FaeI CATG 5 cut(s) 205, 556, 658, 910, 969
FatI CATG 5 cut(s) 201, 552, 654, 906, 965
Fnu4HI GCNGC 6 cut(s) 186, 189, 321, 330, 519, 671
FokI GGATG 1 cut(s) 243
FriOI GRGCYC 2 cut(s) 22, 51
Fsp4HI GCNGC 6 cut(s) 186, 189, 321, 330, 519, 671
FspBI CTAG 6 cut(s) 12, 26, 89, 251, 528, 827
GluI GCNGC 6 cut(s) 186, 189, 321, 330, 519, 671
GsaI CCCAGC 1 cut(s) 488
GsuI CTGGAG 1 cut(s) 247
HaeIII GGCC 1 cut(s) 905
HapII CCGG 1 cut(s) 649
HgaI GACGC 1 cut(s) 228
Hin1II CATG 5 cut(s) 205, 556, 658, 910, 969
HincII GTYRAC 2 cut(s) 766, 979
HindII GTYRAC 2 cut(s) 766, 979
HinfI GANTC 4 cut(s) 286, 505, 537, 659
HpaI GTTAAC 1 cut(s) 979
HpaII CCGG 1 cut(s) 649
Hpy166II GTNNAC 4 cut(s) 296, 766, 852, 979
Hpy188I TCNGA 2 cut(s) 285, 370
Hpy188III TCNNGA 2 cut(s) 728, 958
Hpy8I GTNNAC 4 cut(s) 296, 766, 852, 979
HpyCH4III ACNGT 3 cut(s) 428, 614, 856
HpyCH4IV ACGT 1 cut(s) 744
HpyCH4V TGCA 6 cut(s) 205, 332, 467, 518, 673, 969
HpyF10VI GCNNNNNNNGC 4 cut(s) 326, 329, 524, 676
HpyF3I CTNAG 4 cut(s) 290, 407, 680, 846
HpySE526I ACGT 1 cut(s) 744
Hsp92II CATG 5 cut(s) 205, 556, 658, 910, 969
KspAI GTTAAC 1 cut(s) 979
Kzo9I GATC 4 cut(s) 478, 683, 724, 954
LmnI GCTCC 5 cut(s) 266, 283, 493, 651, 920
Lsp1109I GCAGC 5 cut(s) 172, 175, 316, 530, 657
LweI GCATC 3 cut(s) 226, 307, 476
MaeI CTAG 6 cut(s) 12, 26, 89, 251, 528, 827
MaeII ACGT 1 cut(s) 744
MaeIII GTNAC 2 cut(s) 572, 856
MalI GATC 4 cut(s) 480, 685, 726, 956
MboI GATC 4 cut(s) 478, 683, 724, 954
MboII GAAGA 4 cut(s) 456, 554, 595, 800
MfeI CAATTG 2 cut(s) 180, 864
MflI RGATCY 1 cut(s) 683
MhlI GDGCHC 3 cut(s) 22, 51, 88
MluCI AATT 6 cut(s) 180, 495, 622, 700, 864, 893
MlyI GAGTC 1 cut(s) 531
MnlI CCTC 6 cut(s) 85, 291, 407, 410, 705, 794
MseI TTAA 2 cut(s) 912, 978
MslI CAYNNNNRTG 3 cut(s) 380, 551, 584
MspI CCGG 1 cut(s) 649
MspR9I CCNGG 2 cut(s) 351, 796
MunI CAATTG 2 cut(s) 180, 864
MvaI CCWGG 2 cut(s) 351, 796
MvnI CGCG 1 cut(s) 890
MwoI GCNNNNNNNGC 4 cut(s) 326, 329, 524, 676
NcoI CCATGG 1 cut(s) 906
NdeII GATC 4 cut(s) 478, 683, 724, 954
NheI GCTAGC 1 cut(s) 826
NlaIII CATG 5 cut(s) 205, 556, 658, 910, 969
NmuCI GTSAC 2 cut(s) 572, 856
NspI RCATGY 1 cut(s) 205
PaeI GCATGC 1 cut(s) 205
PfeI GAWTC 3 cut(s) 286, 505, 659
PkrI GCNGC 6 cut(s) 187, 190, 322, 331, 520, 672
PleI GAGTC 1 cut(s) 531
PpsI GAGTC 1 cut(s) 531
Ppu21I YACGTR 1 cut(s) 745
Psp124BI GAGCTC 1 cut(s) 22
Psp6I CCWGG 2 cut(s) 349, 794
PspFI CCCAGC 1 cut(s) 484
PspGI CCWGG 2 cut(s) 349, 794
PspPI GGNCC 2 cut(s) 172, 641
PstI CTGCAG 1 cut(s) 334
PsuI RGATCY 1 cut(s) 683
RsaI GTAC 5 cut(s) 164, 297, 743, 747, 933
RsaNI GTAC 5 cut(s) 163, 296, 742, 746, 932
RseI CAYNNNNRTG 3 cut(s) 380, 551, 584
SacI GAGCTC 1 cut(s) 22
SaqAI TTAA 2 cut(s) 912, 978
SatI GCNGC 6 cut(s) 186, 189, 321, 330, 519, 671
Sau3AI GATC 4 cut(s) 478, 683, 724, 954
Sau96I GGNCC 2 cut(s) 172, 641
ScaI AGTACT 1 cut(s) 933
SchI GAGTC 1 cut(s) 531
ScrFI CCNGG 2 cut(s) 351, 796
SduI GDGCHC 3 cut(s) 22, 51, 88
SfaNI GCATC 3 cut(s) 226, 307, 476
SfcI CTRYAG 1 cut(s) 330
SinI GGWCC 2 cut(s) 172, 641
SmiMI CAYNNNNRTG 3 cut(s) 380, 551, 584
SnaBI TACGTA 1 cut(s) 745
SphI GCATGC 1 cut(s) 205
Sse9I AATT 6 cut(s) 180, 495, 622, 700, 864, 893
SsiI CCGC 4 cut(s) 321, 570, 639, 888
SspMI CTAG 6 cut(s) 12, 26, 89, 251, 528, 827
SstI GAGCTC 1 cut(s) 22
StyD4I CCNGG 2 cut(s) 349, 794
StyI CCWWGG 1 cut(s) 906
TaaI ACNGT 3 cut(s) 428, 614, 856
TaiI ACGT 1 cut(s) 747
TaqI TCGA 2 cut(s) 336, 834
TaqII GACCGA 1 cut(s) 189
TasI AATT 6 cut(s) 180, 495, 622, 700, 864, 893
TatI WGTACW 2 cut(s) 162, 931
TauI GCSGC 1 cut(s) 323
TfiI GAWTC 3 cut(s) 286, 505, 659
Tru1I TTAA 2 cut(s) 912, 978
Tru9I TTAA 2 cut(s) 912, 978
TscAI CASTG 8 cut(s) 80, 271, 298, 433, 507, 640, 861, 930
TseFI GTSAC 2 cut(s) 572, 856
TseI GCWGC 5 cut(s) 185, 188, 329, 518, 670
Tsp45I GTSAC 2 cut(s) 572, 856
TspDTI ATGAA 3 cut(s) 17, 651, 748
TspRI CASTG 8 cut(s) 80, 271, 298, 433, 507, 640, 861, 930
VpaK11BI GGWCC 2 cut(s) 172, 641
XapI RAATTY 2 cut(s) 700, 893
XceI RCATGY 1 cut(s) 205
XcmI CCANNNNNNNNNTGG 1 cut(s) 913
XspI CTAG 6 cut(s) 12, 26, 89, 251, 528, 827
ZrmI AGTACT 1 cut(s) 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.