RchiOBHm_Chr4g0385791

Type 1 membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0005349
Physical Location & Seq
Forward (+)
1387392 .. 1391908
4517 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1209 bp
ATGATAACCGAAATTTCAGTTCTCTTTCTCTCCAACTCTCCTTTGAACCACAATCAGATCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCACCCTCATGGATTCGCTCGCACGATTCGTCTGCTTCTATCTGCTCACAGTTTCCTCCTTCTTCTTCTTCTCGCAAGCTAGGGCCCAAGGTACTGCTTCCGTCTTCTTTATCGATAGCCCCCACTCATCAATTTCTTCGCAGCAACGATGTCGTCAAGCCTGACTCAATGTCGCTACCAGAAGTCAGTGCCGCCGTGTCTGTCTTGCTTGGATTTGCACCGCCTGCTTCACTCTCAGCTGCTGGTTCATCTAAGTTAAATGAGGTTCTTGTGCCCAATCCATTTAATAGACCTCACGCTGTTTTCGTGCTGGAAGTCAGAGGAATTGCTGATCCTACTCTTGTTGTCAAACAAAATTCCATGCTTAAAAGTGCTTATGAAACCAAGATTGACCTTGGCTTGAAGAAAGCTGAGATTAAGCTTCCTGATGAAAGTGAAGTATCTGTGTTTTCTTTGGATGAGCAATCGGCAGACTATAATGACAATGAAATCAGCAATTTTGCCTCTTGGATGGGCGGATCATATGTTCCTGATACATTGGAAGCGCTAAACGGAGAGTTGGCCATCCCCTTGGCCAATGGTGATCAGTTGAAGCTTCATATGTCCAAGGAAGCAGACAGGAAATTCATTACTAGCCTTTTGGGGCTCATCCGCAATTTTAGAAGGGCAATGGAGTTGCATGAAGATTTGTTGCATAGTATCCACAGTCCAGCTGAGCTATTAACAGGCAGTTTTGATGGCATCAAGGTTTTAGAAGAGCAGTATGGATCTGACGGTGTTGCTCAACATGGAATGGAAGTGCTAGTTGCTGTAATGACTAAGATATTTGATTTACTCGAACATGCATACAAAGGTCAAATTGTTGGAGCTATCCTCTTTGATGGAGTAGCACCTGTTGATTCGTTGAATGTGGTGTTTACCAGTCGACCATCTGCTCGTTGGCTGGCAGAAACAAAGACCCCAACAAATACAACTGTTGTGGAAGTGCTATTGGTCAGGAAAACAATTGCTTGGATCACAGGAATTATCCTTCTCATTGCAACTCTCTTGGGGGTACACTTCCTTCTGAATATGCCAATCACCAGGGATACGTTACTGTACTCTAATGTCAAGCTGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04614 map04614
Pfam Domains
Protein Families
No domains found.

Protein Analysis

402

Amino Acids

43.71

Weight (kDa)

5.58

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7794 PF25070 70 - 323 4.6e-114 Domain of unknown function (DUF7794)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1012
AciI CCGC 4 cut(s) 279, 308, 603, 739
AclWI GGATC 5 cut(s) 52, 413, 613, 862, 1109
AcoI YGGCCR 2 cut(s) 648, 660
AcsI RAATTY 3 cut(s) 12, 442, 710
AfaI GTAC 3 cut(s) 180, 1143, 1187
AfeI AGCGCT 1 cut(s) 633
AgsI TTSAA 4 cut(s) 46, 490, 679, 994
AhdI GACNNNNNGTC 1 cut(s) 256
AjnI CCWGG 1 cut(s) 1169
AloI GAACNNNNNNTCC 2 cut(s) 597, 629
AluBI AGCT 9 cut(s) 166, 326, 497, 508, 682, 800, 805, 956, 1201
AluI AGCT 9 cut(s) 166, 326, 497, 508, 682, 800, 805, 956, 1201
AlwI GGATC 5 cut(s) 52, 413, 613, 862, 1109
AlwNI CAGNNNCTG 1 cut(s) 329
Aor51HI AGCGCT 1 cut(s) 633
AoxI GGCC 3 cut(s) 170, 648, 660
ApaI GGGCCC 1 cut(s) 174
ApeKI GCWGC 2 cut(s) 228, 326
ApoI RAATTY 3 cut(s) 12, 442, 710
AspLEI GCGC 1 cut(s) 634
AspS9I GGNCC 2 cut(s) 170, 171
AsuHPI GGTGA 3 cut(s) 81, 680, 1159
BaeGI GKGCMC 2 cut(s) 174, 363
BalI TGGCCA 2 cut(s) 650, 662
BanII GRGCYC 2 cut(s) 174, 735
BarI GAAGNNNNNNTAC 2 cut(s) 1134, 1166
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 2 cut(s) 240, 313
BccI CCATC 5 cut(s) 592, 659, 818, 962, 1024
BceAI ACGGC 1 cut(s) 266
BcgI CGANNNNNNTGC 4 cut(s) 101, 135, 220, 254
BciT130I CCWGG 1 cut(s) 1171
BciVI GTATCC 2 cut(s) 797, 1168
BclI TGATCA 1 cut(s) 670
BfaI CTAG 4 cut(s) 167, 720, 890, 1207
BfoI RGCGCY 1 cut(s) 635
BfuI GTATCC 2 cut(s) 797, 1168
BisI GCNGC 3 cut(s) 229, 279, 327
BlpI GCTNAGC 1 cut(s) 801
BlsI GCNGC 3 cut(s) 230, 280, 328
Bme1390I CCNGG 1 cut(s) 1171
BmeRI GACNNNNNGTC 1 cut(s) 256
BmgT120I GGNCC 2 cut(s) 170, 171
BmiI GGNNCC 1 cut(s) 172
BmrFI CCNGG 1 cut(s) 1171
BmsI GCATC 1 cut(s) 837
BpiI GAAGAC 1 cut(s) 183
BplI GAGNNNNNCTC 2 cut(s) 945, 977
Bpu1102I GCTNAGC 1 cut(s) 801
Bsa29I ATCGAT 1 cut(s) 200
BsaJI CCNNGG 5 cut(s) 174, 481, 657, 693, 1170
Bse1I ACTGG 1 cut(s) 1008
Bse3DI GCAATG 2 cut(s) 762, 1122
BseBI CCWGG 1 cut(s) 1171
BseCI ATCGAT 1 cut(s) 200
BseDI CCNNGG 5 cut(s) 174, 481, 657, 693, 1170
BseGI GGATG 4 cut(s) 550, 603, 651, 735
BseMI GCAATG 2 cut(s) 762, 1122
BseMII CTCAG 3 cut(s) 336, 489, 792
BseNI ACTGG 1 cut(s) 1008
BseSI GKGCMC 2 cut(s) 174, 363
BseXI GCAGC 2 cut(s) 240, 313
BshFI GGCC 3 cut(s) 172, 650, 662
BshVI ATCGAT 1 cut(s) 200
BsnI GGCC 3 cut(s) 172, 650, 662
Bsp120I GGGCCC 1 cut(s) 170
Bsp1286I GDGCHC 3 cut(s) 174, 363, 735
Bsp143I GATC 6 cut(s) 57, 418, 605, 670, 854, 1101
Bsp1720I GCTNAGC 1 cut(s) 801
BspACI CCGC 4 cut(s) 279, 308, 603, 739
BspANI GGCC 3 cut(s) 172, 650, 662
BspCNI CTCAG 3 cut(s) 335, 490, 793
BspDI ATCGAT 1 cut(s) 200
BspLI GGNNCC 1 cut(s) 172
BspPI GGATC 5 cut(s) 52, 413, 613, 862, 1109
BspQI GCTCTTC 1 cut(s) 837
BsrDI GCAATG 2 cut(s) 762, 1122
BsrI ACTGG 1 cut(s) 1008
BssECI CCNNGG 5 cut(s) 174, 481, 657, 693, 1170
BssMI GATC 6 cut(s) 57, 418, 605, 670, 854, 1101
BssT1I CCWWGG 4 cut(s) 174, 481, 657, 693
Bst2UI CCWGG 1 cut(s) 1171
Bst4CI ACNGT 5 cut(s) 138, 794, 863, 1063, 1185
Bst6I CTCTTC 1 cut(s) 837
BstAPI GCANNNNNTGC 1 cut(s) 311
BstC8I GCNNGC 4 cut(s) 107, 164, 312, 1032
BstDEI CTNAG 5 cut(s) 322, 339, 498, 801, 906
BstF5I GGATG 4 cut(s) 550, 603, 651, 735
BstH2I RGCGCY 1 cut(s) 635
BstHHI GCGC 1 cut(s) 634
BstKTI GATC 6 cut(s) 60, 421, 608, 673, 857, 1104
BstMBI GATC 6 cut(s) 57, 418, 605, 670, 854, 1101
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 1 cut(s) 1171
BstNSI RCATGY 1 cut(s) 932
BstSCI CCNGG 1 cut(s) 1169
BstSLI GKGCMC 2 cut(s) 174, 363
BstV1I GCAGC 2 cut(s) 240, 313
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 2 cut(s) 57, 854
BstXI CCANNNNNNTGG 1 cut(s) 658
BstYI RGATCY 2 cut(s) 57, 854
Bsu15I ATCGAT 1 cut(s) 200
BsuI GTATCC 2 cut(s) 797, 1168
BsuRI GGCC 3 cut(s) 172, 650, 662
BsuTUI ATCGAT 1 cut(s) 200
BtsCI GGATG 4 cut(s) 550, 603, 651, 735
BtsIMutI CAGTG 1 cut(s) 280
Cac8I GCNNGC 4 cut(s) 107, 164, 312, 1032
CaiI CAGNNNCTG 1 cut(s) 329
CfoI GCGC 1 cut(s) 634
Cfr13I GGNCC 2 cut(s) 170, 171
ClaI ATCGAT 1 cut(s) 200
Csp6I GTAC 3 cut(s) 179, 1142, 1186
CspCI CAANNNNNGTGG 2 cut(s) 1047, 1082
CviAII CATG 5 cut(s) 96, 448, 767, 875, 929
CviQI GTAC 3 cut(s) 179, 1142, 1186
DdeI CTNAG 5 cut(s) 322, 339, 498, 801, 906
DpnI GATC 6 cut(s) 59, 420, 607, 672, 856, 1103
DpnII GATC 6 cut(s) 57, 418, 605, 670, 854, 1101
DriI GACNNNNNGTC 1 cut(s) 256
EaeI YGGCCR 2 cut(s) 648, 660
Eam1104I CTCTTC 1 cut(s) 837
Eam1105I GACNNNNNGTC 1 cut(s) 256
EarI CTCTTC 1 cut(s) 837
EciI GGCGGA 1 cut(s) 618
Eco130I CCWWGG 4 cut(s) 174, 481, 657, 693
Eco24I GRGCYC 2 cut(s) 174, 735
Eco47III AGCGCT 1 cut(s) 633
EcoO109I RGGNCCY 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 1169
EcoT14I CCWWGG 4 cut(s) 174, 481, 657, 693
EcoT22I ATGCAT 1 cut(s) 934
EcoT38I GRGCYC 2 cut(s) 174, 735
ErhI CCWWGG 4 cut(s) 174, 481, 657, 693
FaeI CATG 5 cut(s) 99, 451, 770, 878, 932
FatI CATG 5 cut(s) 95, 447, 766, 874, 928
FauNDI CATATG 2 cut(s) 610, 687
FbaI TGATCA 1 cut(s) 670
FblI GTMKAC 1 cut(s) 1012
Fnu4HI GCNGC 3 cut(s) 229, 279, 327
FokI GGATG 4 cut(s) 557, 610, 638, 722
FriOI GRGCYC 2 cut(s) 174, 735
Fsp4HI GCNGC 3 cut(s) 229, 279, 327
FspBI CTAG 4 cut(s) 167, 720, 890, 1207
GlaI GCGC 1 cut(s) 633
GluI GCNGC 3 cut(s) 229, 279, 327
HaeII RGCGCY 1 cut(s) 635
HaeIII GGCC 3 cut(s) 172, 650, 662
HhaI GCGC 1 cut(s) 634
Hin1II CATG 5 cut(s) 99, 451, 770, 878, 932
Hin6I GCGC 1 cut(s) 632
HinP1I GCGC 1 cut(s) 632
HincII GTYRAC 1 cut(s) 1013
HindII GTYRAC 1 cut(s) 1013
HindIII AAGCTT 2 cut(s) 506, 680
HinfI GANTC 4 cut(s) 100, 113, 251, 986
HphI GGTGA 3 cut(s) 81, 680, 1159
Hpy166II GTNNAC 3 cut(s) 1005, 1013, 1144
Hpy188I TCNGA 4 cut(s) 57, 407, 859, 1155
Hpy188III TCNNGA 3 cut(s) 512, 617, 1084
Hpy8I GTNNAC 3 cut(s) 1005, 1013, 1144
HpyAV CCTTC 4 cut(s) 156, 744, 1127, 1160
HpyCH4III ACNGT 5 cut(s) 138, 794, 863, 1063, 1185
HpyCH4IV ACGT 1 cut(s) 1178
HpyCH4V TGCA 5 cut(s) 305, 766, 781, 932, 1127
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 5 cut(s) 322, 339, 498, 801, 906
HpySE526I ACGT 1 cut(s) 1178
Hsp92II CATG 5 cut(s) 99, 451, 770, 878, 932
HspAI GCGC 1 cut(s) 632
Ksp22I TGATCA 1 cut(s) 670
Kzo9I GATC 6 cut(s) 57, 418, 605, 670, 854, 1101
LguI GCTCTTC 1 cut(s) 837
LmnI GCTCC 1 cut(s) 953
Lsp1109I GCAGC 2 cut(s) 240, 313
LweI GCATC 1 cut(s) 837
MaeI CTAG 4 cut(s) 167, 720, 890, 1207
MaeII ACGT 1 cut(s) 1178
MaeIII GTNAC 1 cut(s) 1179
MalI GATC 6 cut(s) 59, 420, 607, 672, 856, 1103
MboI GATC 6 cut(s) 57, 418, 605, 670, 854, 1101
MboII GAAGA 8 cut(s) 141, 144, 147, 183, 215, 502, 782, 854
MfeI CAATTG 1 cut(s) 1092
MflI RGATCY 2 cut(s) 57, 854
MhlI GDGCHC 3 cut(s) 174, 363, 735
MlsI TGGCCA 2 cut(s) 650, 662
MluNI TGGCCA 2 cut(s) 650, 662
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 2 cut(s) 57, 931
MnlI CCTC 8 cut(s) 73, 103, 153, 343, 390, 401, 601, 971
Mox20I TGGCCA 2 cut(s) 650, 662
Mph1103I ATGCAT 1 cut(s) 934
MscI TGGCCA 2 cut(s) 650, 662
MseI TTAA 5 cut(s) 344, 372, 453, 504, 809
MslI CAYNNNNRTG 1 cut(s) 94
Msp20I TGGCCA 2 cut(s) 650, 662
MspA1I CMGCKG 2 cut(s) 326, 800
MspR9I CCNGG 1 cut(s) 1171
MunI CAATTG 1 cut(s) 1092
MvaI CCWGG 1 cut(s) 1171
MwoI GCNNNNNNNGC 1 cut(s) 311
NdeI CATATG 2 cut(s) 610, 687
NdeII GATC 6 cut(s) 57, 418, 605, 670, 854, 1101
NlaIII CATG 5 cut(s) 99, 451, 770, 878, 932
NlaIV GGNNCC 1 cut(s) 172
NsiI ATGCAT 1 cut(s) 934
NspI RCATGY 1 cut(s) 932
PciSI GCTCTTC 1 cut(s) 837
PcsI WCGNNNNNNNCGW 2 cut(s) 113, 390
PfeI GAWTC 3 cut(s) 100, 113, 986
PkrI GCNGC 3 cut(s) 230, 280, 328
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 1169
PspGI CCWGG 1 cut(s) 1169
PspN4I GGNNCC 1 cut(s) 172
PspOMI GGGCCC 1 cut(s) 170
PspPI GGNCC 2 cut(s) 170, 171
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 2 cut(s) 57, 854
PvuII CAGCTG 2 cut(s) 326, 800
RsaI GTAC 3 cut(s) 180, 1143, 1187
RsaNI GTAC 3 cut(s) 179, 1142, 1186
RseI CAYNNNNRTG 1 cut(s) 94
SalI GTCGAC 1 cut(s) 1011
SapI GCTCTTC 1 cut(s) 837
SaqAI TTAA 5 cut(s) 344, 372, 453, 504, 809
SatI GCNGC 3 cut(s) 229, 279, 327
Sau3AI GATC 6 cut(s) 57, 418, 605, 670, 854, 1101
Sau96I GGNCC 2 cut(s) 170, 171
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 1171
SduI GDGCHC 3 cut(s) 174, 363, 735
SfaNI GCATC 1 cut(s) 837
SmiMI CAYNNNNRTG 1 cut(s) 94
SsiI CCGC 4 cut(s) 279, 308, 603, 739
SspMI CTAG 4 cut(s) 167, 720, 890, 1207
StyD4I CCNGG 1 cut(s) 1169
StyI CCWWGG 4 cut(s) 174, 481, 657, 693
TaaI ACNGT 5 cut(s) 138, 794, 863, 1063, 1185
TaiI ACGT 1 cut(s) 1181
TaqI TCGA 3 cut(s) 200, 924, 1012
TatI WGTACW 1 cut(s) 1185
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 3 cut(s) 100, 113, 986
Tru1I TTAA 5 cut(s) 344, 372, 453, 504, 809
Tru9I TTAA 5 cut(s) 344, 372, 453, 504, 809
TscAI CASTG 1 cut(s) 280
TseI GCWGC 2 cut(s) 228, 326
TspDTI ATGAA 7 cut(s) 324, 480, 531, 588, 674, 703, 783
TspGWI ACGGA 2 cut(s) 177, 654
TspRI CASTG 1 cut(s) 280
XapI RAATTY 3 cut(s) 12, 442, 710
XceI RCATGY 1 cut(s) 932
XcmI CCANNNNNNNNNTGG 1 cut(s) 1023
XmiI GTMKAC 1 cut(s) 1012
XspI CTAG 4 cut(s) 167, 720, 890, 1207
Zsp2I ATGCAT 1 cut(s) 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.