RchiOBHm_Chr4g0406491

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004298
Physical Location & Seq
Reverse (-)
28315626 .. 28319039
3414 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 534 bp
ATGGAATTTGAATCTGAAGATGCTGCAAAGATATTTTATGATGACTATGCCAGACGCCTTGGATTTGTCATGCGTGTCATGTCATGTCGTCGATCCGAAAGAGATGGTAGGATTCTCGCTCGTCGACTTGGCTGTAATAAGGAAGGTCACTGTGTTAGTATTCGAGGTAAATTTGGACCCGTCAGAAAACCGCGAGCCAGTACAAGGGAGGGTTGTAAGGCAATGATTCATGTCAAGTATGATAAATCTGGTAAATGGGTGATTACAAAATTTGTTAAGGAACATAACCATTCACTTGTGGTGTCTCCACGTGAAGCACGTCAAACAATGGATGAGAAGGATAAGAAAATTCAAGAATTATCTGCAGAGCTTCGGAATAAGAAACGCTTGTGTACAACATATCAAGAACAGCTAACAGCATTTATGAAAATCGTTGAAGAGTATAATGACCAGCTCTCCTTGAAAGTGAAAAACGTAGTTAACAATCTTAAAGAATTCGAATCCATAGATGTGGAGCTTACGCAGCGAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

177

Amino Acids

20.71

Weight (kDa)

9.53

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 12 - 100 1.6e-28 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 124
AccII CGCG 1 cut(s) 193
AciI CCGC 1 cut(s) 191
AclWI GGATC 1 cut(s) 87
AcsI RAATTY 5 cut(s) 5, 170, 269, 348, 494
AcuI CTGAAG 1 cut(s) 36
AcvI CACGTG 1 cut(s) 311
AcyI GRCGYC 1 cut(s) 55
AfaI GTAC 2 cut(s) 202, 394
AfiI CCNNNNNNNGG 1 cut(s) 204
AgsI TTSAA 4 cut(s) 11, 353, 437, 463
AjiI CACGTC 1 cut(s) 320
AluBI AGCT 4 cut(s) 370, 412, 454, 517
AluI AGCT 4 cut(s) 370, 412, 454, 517
Alw26I GTCTC 1 cut(s) 309
AlwI GGATC 1 cut(s) 87
ApeKI GCWGC 2 cut(s) 23, 523
ApoI RAATTY 5 cut(s) 5, 170, 269, 348, 494
AspS9I GGNCC 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 271
AsuII TTCGAA 1 cut(s) 498
AvaII GGWCC 1 cut(s) 176
BbrPI CACGTG 1 cut(s) 311
BbvI GCAGC 1 cut(s) 10
BccI CCATC 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 309
BfmI CTRYAG 1 cut(s) 363
BisI GCNGC 2 cut(s) 24, 524
BlsI GCNGC 2 cut(s) 25, 525
Bme18I GGWCC 1 cut(s) 176
BmgBI CACGTC 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 178
BmsI GCATC 1 cut(s) 10
Bpu14I TTCGAA 1 cut(s) 498
BsaAI YACGTR 1 cut(s) 311
BsaHI GRCGYC 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse1I ACTGG 1 cut(s) 198
Bse3DI GCAATG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 1 cut(s) 204
BseMI GCAATG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 193
BslI CCNNNNNNNGG 1 cut(s) 204
BsmAI GTCTC 1 cut(s) 309
Bsp119I TTCGAA 1 cut(s) 498
Bsp1407I TGTACA 1 cut(s) 392
Bsp143I GATC 1 cut(s) 92
BspACI CCGC 1 cut(s) 191
BspFNI CGCG 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 178
BspMAI CTGCAG 1 cut(s) 367
BspPI GGATC 1 cut(s) 87
BspT104I TTCGAA 1 cut(s) 498
BsrDI GCAATG 1 cut(s) 228
BsrGI TGTACA 1 cut(s) 392
BsrI ACTGG 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 1 cut(s) 92
BssNI GRCGYC 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 432
BstACI GRCGYC 1 cut(s) 55
BstAUI TGTACA 1 cut(s) 392
BstBAI YACGTR 1 cut(s) 311
BstBI TTCGAA 1 cut(s) 498
BstC8I GCNNGC 1 cut(s) 195
BstF5I GGATG 1 cut(s) 337
BstFNI CGCG 1 cut(s) 193
BstKTI GATC 1 cut(s) 95
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 1 cut(s) 92
BstMWI GCNNNNNNNGC 1 cut(s) 523
BstSFI CTRYAG 1 cut(s) 363
BstUI CGCG 1 cut(s) 193
BstV1I GCAGC 1 cut(s) 10
BstXI CCANNNNNNTGG 1 cut(s) 511
BtrI CACGTC 1 cut(s) 320
BtsCI GGATG 1 cut(s) 337
BtsIMutI CAGTG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 176
CseI GACGC 1 cut(s) 63
Csp6I GTAC 2 cut(s) 201, 393
CviAII CATG 4 cut(s) 70, 79, 84, 230
CviJI RGCY 6 cut(s) 132, 197, 370, 412, 454, 517
CviKI_1 RGCY 6 cut(s) 132, 197, 370, 412, 454, 517
CviQI GTAC 2 cut(s) 201, 393
DpnI GATC 1 cut(s) 94
DpnII GATC 1 cut(s) 92
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
Eco130I CCWWGG 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 176
Eco57I CTGAAG 1 cut(s) 36
Eco72I CACGTG 1 cut(s) 311
EcoRI GAATTC 1 cut(s) 494
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 4 cut(s) 73, 82, 87, 233
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FatI CATG 4 cut(s) 69, 78, 83, 229
FblI GTMKAC 1 cut(s) 124
Fnu4HI GCNGC 2 cut(s) 24, 524
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 2 cut(s) 24, 524
GluI GCNGC 2 cut(s) 24, 524
HgaI GACGC 1 cut(s) 63
Hin1I GRCGYC 1 cut(s) 55
Hin1II CATG 4 cut(s) 73, 82, 87, 233
HincII GTYRAC 2 cut(s) 125, 481
HindII GTYRAC 2 cut(s) 125, 481
HinfI GANTC 4 cut(s) 11, 112, 226, 500
HpaI GTTAAC 1 cut(s) 481
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 3 cut(s) 125, 393, 481
Hpy188I TCNGA 4 cut(s) 16, 97, 185, 375
Hpy188III TCNNGA 2 cut(s) 353, 404
Hpy8I GTNNAC 3 cut(s) 125, 393, 481
Hpy99I CGWCG 2 cut(s) 93, 126
HpyAV CCTTC 2 cut(s) 137, 331
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 3 cut(s) 310, 319, 474
HpyCH4V TGCA 2 cut(s) 26, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 523
HpySE526I ACGT 3 cut(s) 310, 319, 474
Hsp92I GRCGYC 1 cut(s) 55
Hsp92II CATG 4 cut(s) 73, 82, 87, 233
KspAI GTTAAC 1 cut(s) 481
Kzo9I GATC 1 cut(s) 92
LmnI GCTCC 1 cut(s) 514
LpnPI CCDG 4 cut(s) 64, 211, 234, 464
Lsp1109I GCAGC 1 cut(s) 10
LweI GCATC 1 cut(s) 10
MaeII ACGT 3 cut(s) 310, 319, 474
MaeIII GTNAC 1 cut(s) 146
MalI GATC 1 cut(s) 94
MboI GATC 1 cut(s) 92
MboII GAAGA 2 cut(s) 29, 449
MluCI AATT 6 cut(s) 5, 170, 269, 348, 356, 494
MnlI CCTC 3 cut(s) 158, 202, 521
MseI TTAA 3 cut(s) 276, 480, 489
MslI CAYNNNNRTG 1 cut(s) 509
MvnI CGCG 1 cut(s) 193
MwoI GCNNNNNNNGC 1 cut(s) 523
NdeII GATC 1 cut(s) 92
NlaIII CATG 4 cut(s) 73, 82, 87, 233
NlaIV GGNNCC 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 146
NspV TTCGAA 1 cut(s) 498
PcsI WCGNNNNNNNCGW 1 cut(s) 316
PfeI GAWTC 4 cut(s) 11, 112, 226, 500
PkrI GCNGC 2 cut(s) 25, 525
PmaCI CACGTG 1 cut(s) 311
PmlI CACGTG 1 cut(s) 311
Ppu21I YACGTR 1 cut(s) 311
PspCI CACGTG 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 1 cut(s) 176
PstI CTGCAG 1 cut(s) 367
RsaI GTAC 2 cut(s) 202, 394
RsaNI GTAC 2 cut(s) 201, 393
RseI CAYNNNNRTG 1 cut(s) 509
SalI GTCGAC 1 cut(s) 123
SaqAI TTAA 3 cut(s) 276, 480, 489
SatI GCNGC 2 cut(s) 24, 524
Sau3AI GATC 1 cut(s) 92
Sau96I GGNCC 1 cut(s) 176
SetI ASST 9 cut(s) 148, 169, 313, 322, 372, 414, 456, 477, 519
SfaNI GCATC 1 cut(s) 10
SfcI CTRYAG 1 cut(s) 363
SfuI TTCGAA 1 cut(s) 498
SinI GGWCC 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 509
Sse9I AATT 6 cut(s) 5, 170, 269, 348, 356, 494
SsiI CCGC 1 cut(s) 191
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 3 cut(s) 313, 322, 477
TaqI TCGA 4 cut(s) 91, 124, 163, 498
TasI AATT 6 cut(s) 5, 170, 269, 348, 356, 494
TatI WGTACW 2 cut(s) 200, 392
TfiI GAWTC 4 cut(s) 11, 112, 226, 500
Tru1I TTAA 3 cut(s) 276, 480, 489
Tru9I TTAA 3 cut(s) 276, 480, 489
TscAI CASTG 1 cut(s) 155
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 2 cut(s) 23, 523
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 2 cut(s) 218, 440
TspRI CASTG 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 176
XapI RAATTY 5 cut(s) 5, 170, 269, 348, 494
XmiI GTMKAC 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.