Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015393

Physical Location & Seq

Genomic Coordinates Reverse (-)

30197532 .. 30199222

Gene Structure 1691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGACAAGAAACGAAAGAATATTTGTGTTTCTTGTGGTCCTTCCACTTCTAGTGTCTCTGTGTTCGTCGGCGACCTTGGCTCCTTCTTCAAAACCACCACCACCACCACCAAAGCAAAACAAGTTGACCTGGCATTACTATAAAGTCACTAACACATGCCGCGATGCAGAAGCTTTCATCCAGCACCAGGTCAAGAAGTTTTGGGACCAGGATAAAAGCATCACCGCTAAGCTTCTCCGGTTGCTCTACTCTGACTGCTTCGTAACTGGTTGTGATGCATCAGTACTGCTGGATGGTCCAAACTCTGAGAAAACAGCATCACAGAATTGGGGACTGGGAGGTTTCTATTTCATCGACAAAGTCAAAAAAGTTCTTGAACATTACTGCCCCGGTGCCGTCTCGTGTGCTGATATTCTCAACCTTGCCACCAGGGATGCTGTTCATTTGGCTGGTGCACCGTCTTATCCTGTTCTTACAGGCCGAAGGGACGGCCTAACATCAAGCAGATCATCAGTCGACCTTCCCTCACCCTCCATTTCATGGCAGGCTTCACTTGACTACTTCAAATCCAGAGGCTTGAATGTATTGGATATGACTACTCTACTAGGTTCACATTCAATGGGTAAAACACATTGTAGCTTCATTTTGGATCGGCTCTACAATTTTAATGGCACAAACAAGCCAGACCCAAGCATGGAACCCTCATTCTTATCCTCCATGAGGAAGTTATGCCCACCAAGAACTACAAAGGGACAGAGTGACCCGCTGGTGTACCTAAACCCCCAATCTGGGGCCAATTACAATTTTACACAATCCTACTACTCCAGAGTTTTATCCAAGAAAGCTGTGCTGGGAGTCGACCAGCAGCTACTGTTTGGTGAAGACACCAAGGATATCACCGATGAGTTTGCTGCTGGTTTTGAAGATTTTCGGAGGTCATATGCTTACTCAATGAGCAGAATGGGTGCTATCAAGGTTTTGACAGGTAACCAGGGAGAGATACGCCGGAATTGCCGAGTTCCAAACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

343

Amino Acids

38.22

Weight (kDa)

9.1

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	61 - 305	1.4e-70	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015393)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43480 AT5G24070
fragaria_vesca	FvH4_3g26850
malus_domestica	MD04G1046400.v1.1
prunus_persica	Prupe.1G199900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0407891
rosa_laevigata	RLG00000008691
rosa_multiflora	Rmu_co8108400.1_g000001 Rmu_sc0029075.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352430
rosa_rugosa	Rorug04G0082000
rosa_samantha	Rh4AG147100 Rh4BG144600 Rh4CG153900 Rh4DG141100
rosa_wichuraiana	Rw4G012080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	392
AccB7I	CCANNNNNTGG	1 cut(s)	540
AccI	GTMKAC	2 cut(s)	516, 858
AccII	CGCG	1 cut(s)	162
AciI	CCGC	3 cut(s)	160, 225, 764
AclWI	GGATC	1 cut(s)	657
AfaI	GTAC	2 cut(s)	285, 773
AfiI	CCNNNNNNNGG	7 cut(s)	187, 540, 694, 720, 788, 789, 790
AgsI	TTSAA	6 cut(s)	90, 377, 565, 580, 618, 923
AjnI	CCWGG	5 cut(s)	128, 186, 207, 428, 990
AluBI	AGCT	5 cut(s)	173, 232, 639, 845, 868
AluI	AGCT	5 cut(s)	173, 232, 639, 845, 868
Alw21I	GWGCWC	1 cut(s)	457
Alw26I	GTCTC	2 cut(s)	60, 403
Alw44I	GTGCAC	1 cut(s)	453
AlwI	GGATC	1 cut(s)	657
AlwNI	CAGNNNCTG	1 cut(s)	871
AoxI	GGCC	3 cut(s)	478, 490, 792
ApaLI	GTGCAC	1 cut(s)	453
ApeKI	GCWGC	2 cut(s)	865, 911
Asp700I	GAANNNNTTC	1 cut(s)	927
AspS9I	GGNCC	4 cut(s)	37, 205, 296, 792
AsuC2I	CCSGG	1 cut(s)	390
AsuHPI	GGTGA	4 cut(s)	214, 519, 889, 890
AvaII	GGWCC	3 cut(s)	37, 205, 296
BaeGI	GKGCMC	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	392
BauI	CACGAG	1 cut(s)	400
BbsI	GAAGAC	1 cut(s)	888
Bbv12I	GWGCWC	1 cut(s)	457
BbvI	GCAGC	2 cut(s)	877, 898
BccI	CCATC	1 cut(s)	287
BceAI	ACGGC	2 cut(s)	380, 505
BcgI	CGANNNNNNTGC	2 cut(s)	890, 924
BciT130I	CCWGG	5 cut(s)	130, 188, 209, 430, 992
BcnI	CCSGG	1 cut(s)	390
BcoDI	GTCTC	2 cut(s)	60, 403
BfaI	CTAG	3 cut(s)	50, 605, 1030
BisI	GCNGC	3 cut(s)	160, 866, 912
BlpI	GCTNAGC	1 cut(s)	228
BlsI	GCNGC	3 cut(s)	161, 867, 913
BmcAI	AGTACT	1 cut(s)	285
Bme1390I	CCNGG	6 cut(s)	130, 188, 209, 390, 430, 992
Bme18I	GGWCC	3 cut(s)	37, 205, 296
BmgT120I	GGNCC	4 cut(s)	37, 205, 296, 792
BmiI	GGNNCC	5 cut(s)	81, 206, 394, 699, 793
BmrFI	CCNGG	6 cut(s)	130, 188, 209, 390, 430, 992
BmrI	ACTGGG	1 cut(s)	344
BmsI	GCATC	6 cut(s)	154, 228, 265, 287, 326, 424
BmuI	ACTGGG	1 cut(s)	344
BpiI	GAAGAC	1 cut(s)	888
BpmI	CTGGAG	1 cut(s)	808
Bpu1102I	GCTNAGC	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	390
BsaJI	CCNNGG	5 cut(s)	75, 388, 429, 888, 991
BsaWI	WCCGGW	1 cut(s)	237
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bsc4I	CCNNNNNNNGG	7 cut(s)	187, 540, 694, 720, 788, 789, 790
Bse1I	ACTGG	2 cut(s)	271, 339
BseBI	CCWGG	5 cut(s)	130, 188, 209, 430, 992
BseDI	CCNNGG	5 cut(s)	75, 388, 429, 888, 991
BseGI	GGATG	3 cut(s)	177, 298, 439
BseLI	CCNNNNNNNGG	7 cut(s)	187, 540, 694, 720, 788, 789, 790
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	2 cut(s)	271, 339
BseSI	GKGCMC	1 cut(s)	457
BseXI	GCAGC	2 cut(s)	877, 898
BseYI	CCCAGC	1 cut(s)	850
Bsh1236I	CGCG	1 cut(s)	162
BshFI	GGCC	3 cut(s)	480, 492, 794
BshNI	GGYRCC	1 cut(s)	392
BsiHKAI	GWGCWC	1 cut(s)	457
BsiSI	CCGG	3 cut(s)	238, 390, 1006
BslFI	GGGAC	4 cut(s)	218, 345, 500, 765
BslI	CCNNNNNNNGG	7 cut(s)	187, 540, 694, 720, 788, 789, 790
BsmAI	GTCTC	2 cut(s)	60, 403
BsmBI	CGTCTC	1 cut(s)	403
BsmFI	GGGAC	4 cut(s)	218, 345, 500, 765
BsnI	GGCC	3 cut(s)	480, 492, 794
Bsp1286I	GDGCHC	1 cut(s)	457
Bsp143I	GATC	2 cut(s)	506, 649
Bsp1720I	GCTNAGC	1 cut(s)	228
BspACI	CCGC	3 cut(s)	160, 225, 764
BspANI	GGCC	3 cut(s)	480, 492, 794
BspCNI	CTCAG	1 cut(s)	298
BspFNI	CGCG	1 cut(s)	162
BspLI	GGNNCC	5 cut(s)	81, 206, 394, 699, 793
BspPI	GGATC	1 cut(s)	657
BspT107I	GGYRCC	1 cut(s)	392
BsrI	ACTGG	2 cut(s)	271, 339
BssECI	CCNNGG	5 cut(s)	75, 388, 429, 888, 991
BssMI	GATC	2 cut(s)	506, 649
BssSI	CACGAG	1 cut(s)	400
BssT1I	CCWWGG	2 cut(s)	75, 888
Bst2BI	CACGAG	1 cut(s)	400
Bst2UI	CCWGG	5 cut(s)	130, 188, 209, 430, 992
Bst4CI	ACNGT	2 cut(s)	459, 873
BstC8I	GCNNGC	1 cut(s)	546
BstDEI	CTNAG	2 cut(s)	228, 306
BstEII	GGTNACC	1 cut(s)	986
BstENI	CCTNNNNNAGG	1 cut(s)	718
BstF5I	GGATG	3 cut(s)	177, 298, 439
BstFNI	CGCG	1 cut(s)	162
BstKTI	GATC	2 cut(s)	509, 652
BstMAI	GTCTC	2 cut(s)	60, 403
BstMBI	GATC	2 cut(s)	506, 649
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 1011
BstNI	CCWGG	5 cut(s)	130, 188, 209, 430, 992
BstNSI	RCATGY	1 cut(s)	159
BstPI	GGTNACC	1 cut(s)	986
BstSCI	CCNGG	6 cut(s)	128, 186, 207, 388, 428, 990
BstSLI	GKGCMC	1 cut(s)	457
BstUI	CGCG	1 cut(s)	162
BstV1I	GCAGC	2 cut(s)	877, 898
BstV2I	GAAGAC	1 cut(s)	888
BsuRI	GGCC	3 cut(s)	480, 492, 794
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	3 cut(s)	177, 298, 439
Cac8I	GCNNGC	1 cut(s)	546
CaiI	CAGNNNCTG	1 cut(s)	871
Cfr13I	GGNCC	4 cut(s)	37, 205, 296, 792
CsiI	ACCWGGT	1 cut(s)	186
Csp6I	GTAC	2 cut(s)	284, 772
CviAII	CATG	4 cut(s)	156, 540, 694, 718
CviQI	GTAC	2 cut(s)	284, 772
DdeI	CTNAG	2 cut(s)	228, 306
DpnI	GATC	2 cut(s)	508, 651
DpnII	GATC	2 cut(s)	506, 649
Eco130I	CCWWGG	2 cut(s)	75, 888
Eco32I	GATATC	1 cut(s)	895
Eco47I	GGWCC	3 cut(s)	37, 205, 296
Eco91I	GGTNACC	1 cut(s)	986
EcoNI	CCTNNNNNAGG	1 cut(s)	718
EcoO65I	GGTNACC	1 cut(s)	986
EcoRII	CCWGG	5 cut(s)	128, 186, 207, 428, 990
EcoRV	GATATC	1 cut(s)	895
EcoT14I	CCWWGG	2 cut(s)	75, 888
EcoT22I	ATGCAT	1 cut(s)	280
ErhI	CCWWGG	2 cut(s)	75, 888
Esp3I	CGTCTC	1 cut(s)	403
FaeI	CATG	4 cut(s)	159, 543, 697, 721
FaiI	YATR	9 cut(s)	141, 157, 541, 593, 695, 719, 730, 940, 942
FaqI	GGGAC	4 cut(s)	218, 345, 500, 765
FatI	CATG	4 cut(s)	155, 539, 693, 717
FauI	CCCGC	1 cut(s)	771
FauNDI	CATATG	1 cut(s)	940
FblI	GTMKAC	2 cut(s)	516, 858
Fnu4HI	GCNGC	3 cut(s)	160, 866, 912
FokI	GGATG	3 cut(s)	164, 305, 446
Fsp4HI	GCNGC	3 cut(s)	160, 866, 912
FspBI	CTAG	3 cut(s)	50, 605, 1030
GluI	GCNGC	3 cut(s)	160, 866, 912
GsaI	CCCAGC	1 cut(s)	854
GsuI	CTGGAG	1 cut(s)	808
HaeIII	GGCC	3 cut(s)	480, 492, 794
HapII	CCGG	3 cut(s)	238, 390, 1006
Hin1II	CATG	4 cut(s)	159, 543, 697, 721
HincII	GTYRAC	3 cut(s)	126, 517, 859
HindII	GTYRAC	3 cut(s)	126, 517, 859
HindIII	AAGCTT	2 cut(s)	171, 230
HinfI	GANTC	1 cut(s)	855
HpaII	CCGG	3 cut(s)	238, 390, 1006
HphI	GGTGA	4 cut(s)	214, 519, 889, 890
Hpy166II	GTNNAC	6 cut(s)	126, 455, 517, 611, 772, 859
Hpy188I	TCNGA	3 cut(s)	253, 307, 933
Hpy188III	TCNNGA	4 cut(s)	193, 374, 570, 825
Hpy8I	GTNNAC	6 cut(s)	126, 455, 517, 611, 772, 859
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	4 cut(s)	50, 93, 477, 530
HpyCH4III	ACNGT	2 cut(s)	459, 873
HpyCH4V	TGCA	3 cut(s)	167, 278, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 1011
HpyF3I	CTNAG	2 cut(s)	228, 306
Hsp92II	CATG	4 cut(s)	159, 543, 697, 721
Kzo9I	GATC	2 cut(s)	506, 649
LmnI	GCTCC	1 cut(s)	85
Lsp1109I	GCAGC	2 cut(s)	877, 898
LweI	GCATC	6 cut(s)	154, 228, 265, 287, 326, 424
MabI	ACCWGGT	1 cut(s)	186
MaeI	CTAG	3 cut(s)	50, 605, 1030
MaeIII	GTNAC	4 cut(s)	145, 262, 758, 986
MalI	GATC	2 cut(s)	508, 651
MboI	GATC	2 cut(s)	506, 649
MboII	GAAGA	3 cut(s)	78, 893, 935
MhlI	GDGCHC	1 cut(s)	457
MluCI	AATT	5 cut(s)	325, 661, 796, 802, 1009
MlyI	GAGTC	1 cut(s)	864
MnlI	CCTC	8 cut(s)	332, 535, 541, 566, 712, 714, 724, 927
Mph1103I	ATGCAT	1 cut(s)	280
MroXI	GAANNNNTTC	1 cut(s)	927
MseI	TTAA	1 cut(s)	666
MspA1I	CMGCKG	1 cut(s)	766
MspI	CCGG	3 cut(s)	238, 390, 1006
MspR9I	CCNGG	6 cut(s)	130, 188, 209, 390, 430, 992
MvaI	CCWGG	5 cut(s)	130, 188, 209, 430, 992
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	77, 1011
NciI	CCSGG	1 cut(s)	390
NdeI	CATATG	1 cut(s)	940
NdeII	GATC	2 cut(s)	506, 649
NlaIII	CATG	4 cut(s)	159, 543, 697, 721
NlaIV	GGNNCC	5 cut(s)	81, 206, 394, 699, 793
NmuCI	GTSAC	2 cut(s)	145, 758
NsiI	ATGCAT	1 cut(s)	280
NspI	RCATGY	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	927
PflFI	GACNNNGTC	1 cut(s)	359
PflMI	CCANNNNNTGG	1 cut(s)	540
PkrI	GCNGC	3 cut(s)	161, 867, 913
PleI	GAGTC	1 cut(s)	863
PpsI	GAGTC	1 cut(s)	863
Psp6I	CCWGG	5 cut(s)	128, 186, 207, 428, 990
PspEI	GGTNACC	1 cut(s)	986
PspFI	CCCAGC	1 cut(s)	850
PspGI	CCWGG	5 cut(s)	128, 186, 207, 428, 990
PspN4I	GGNNCC	5 cut(s)	81, 206, 394, 699, 793
PspPI	GGNCC	4 cut(s)	37, 205, 296, 792
PstNI	CAGNNNCTG	1 cut(s)	871
PsyI	GACNNNGTC	1 cut(s)	359
RsaI	GTAC	2 cut(s)	285, 773
RsaNI	GTAC	2 cut(s)	284, 772
SalI	GTCGAC	2 cut(s)	515, 857
SaqAI	TTAA	1 cut(s)	666
SatI	GCNGC	3 cut(s)	160, 866, 912
Sau3AI	GATC	2 cut(s)	506, 649
Sau96I	GGNCC	4 cut(s)	37, 205, 296, 792
ScaI	AGTACT	1 cut(s)	285
SchI	GAGTC	1 cut(s)	864
ScrFI	CCNGG	6 cut(s)	130, 188, 209, 390, 430, 992
SduI	GDGCHC	1 cut(s)	457
SexAI	ACCWGGT	1 cut(s)	186
SfaNI	GCATC	6 cut(s)	154, 228, 265, 287, 326, 424
SinI	GGWCC	3 cut(s)	37, 205, 296
Sse9I	AATT	5 cut(s)	325, 661, 796, 802, 1009
SsiI	CCGC	3 cut(s)	160, 225, 764
SspI	AATATT	1 cut(s)	21
SspMI	CTAG	3 cut(s)	50, 605, 1030
StyD4I	CCNGG	6 cut(s)	128, 186, 207, 388, 428, 990
StyI	CCWWGG	2 cut(s)	75, 888
TaaI	ACNGT	2 cut(s)	459, 873
TaqI	TCGA	3 cut(s)	354, 516, 858
TasI	AATT	5 cut(s)	325, 661, 796, 802, 1009
TatI	WGTACW	1 cut(s)	283
TauI	GCSGC	1 cut(s)	162
Tru1I	TTAA	1 cut(s)	666
Tru9I	TTAA	1 cut(s)	666
TseFI	GTSAC	2 cut(s)	145, 758
TseI	GCWGC	2 cut(s)	865, 911
Tsp45I	GTSAC	2 cut(s)	145, 758
TspDTI	ATGAA	5 cut(s)	166, 340, 431, 528, 631
Tth111I	GACNNNGTC	1 cut(s)	359
Van91I	CCANNNNNTGG	1 cut(s)	540
VneI	GTGCAC	1 cut(s)	453
VpaK11BI	GGWCC	3 cut(s)	37, 205, 296
XagI	CCTNNNNNAGG	1 cut(s)	718
XceI	RCATGY	1 cut(s)	159
XmiI	GTMKAC	2 cut(s)	516, 858
XmnI	GAANNNNTTC	1 cut(s)	927
XspI	CTAG	3 cut(s)	50, 605, 1030
ZrmI	AGTACT	1 cut(s)	285
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.