RchiOBHm_Chr4g0407951

snRNA import into nucleus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0007499
Physical Location & Seq
Reverse (-)
30293104 .. 30293822
719 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 672 bp
ATGTCACCTTCTTCCGATCTCCTCCGCCGTCCGTTCAACAAGCCACTACTTTCAAACCAGCAAAGGCGCAGAGATCTTTCTCTGAAGCAACAAGAGAAAAGCTGTGATTCTCAGCTCCACGCCCGTCGCGTAACCGCCGCACTCCTCTCCCTCCCTCCAGAACTTGGTGCCTCCTCGACGGAGTACTACTCCGACTCGTACCTTGGCGCCAAGGCCGCATCTAAGATTCTCAAAGGAGGCCTAGAGACTCGAAAGTGGTTCCAAAAGAAGCTCATGCGTCCCGAGTGGATGATCGACGTCCCTCATCGCTTGCCCCATGACTGGCGACGAAACGGCACCGTTGTTCATCATTTCCCGTCTGCTTTACCAGATGGTTGCTGCTGGACCAAAGGACAATCTTCCTGTTCTATACTAGACTGTATATTTCACGAGATGGACCAGACTTATTGTGTCATTGACATGTTGTGCTGGAGAGATTACTCTTTGTATGATTGCACGGCTGAGTTTAAATTTTTCTGGTTAAAGTCTAAGCTAGCCGAGACCCATGCTTGCGATCGCCATCCATCATATTATCATATGTATAGATTCAGCTTGGTTCCTTGGTATACCTGTGATCTCACTGCTCTACACACAACATATATATACCGGAGCGGTACCTTACGTAAAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

26.09

Weight (kDa)

9.06

Isoelectric Point (pI)

63.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPN1_m3Gcap_bd PF21974 110 - 212 4.3e-23 Snurportin1, m3G cap-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 300
Acc65I GGTACC 1 cut(s) 653
AccB1I GGYRCC 4 cut(s) 167, 206, 335, 653
AccB7I CCANNNNNTGG 1 cut(s) 164
AccBSI CCGCTC 1 cut(s) 651
AccI GTMKAC 1 cut(s) 605
AccII CGCG 1 cut(s) 129
AciI CCGC 5 cut(s) 25, 135, 138, 216, 651
AcsI RAATTY 1 cut(s) 509
AcuI CTGAAG 1 cut(s) 104
AcyI GRCGYC 2 cut(s) 207, 297
AfaI GTAC 3 cut(s) 185, 200, 655
AfiI CCNNNNNNNGG 2 cut(s) 164, 321
AflIII ACRYGT 1 cut(s) 459
AgsI TTSAA 2 cut(s) 37, 54
AluBI AGCT 5 cut(s) 102, 115, 271, 532, 591
AluI AGCT 5 cut(s) 102, 115, 271, 532, 591
Alw26I GTCTC 2 cut(s) 239, 533
Ama87I CYCGRG 1 cut(s) 281
AoxI GGCC 2 cut(s) 213, 238
ApeKI GCWGC 1 cut(s) 378
ApoI RAATTY 1 cut(s) 509
AsiSI GCGATCGC 1 cut(s) 556
Asp718I GGTACC 1 cut(s) 653
AspLEI GCGC 2 cut(s) 69, 209
AspS9I GGNCC 2 cut(s) 384, 436
AsuNHI GCTAGC 1 cut(s) 532
AvaI CYCGRG 1 cut(s) 281
AvaII GGWCC 2 cut(s) 384, 436
BanI GGYRCC 4 cut(s) 167, 206, 335, 653
BauI CACGAG 1 cut(s) 428
BbvI GCAGC 1 cut(s) 365
BccI CCATC 4 cut(s) 365, 427, 567, 571
BceAI ACGGC 3 cut(s) 12, 349, 513
BcgI CGANNNNNNTGC 2 cut(s) 527, 561
BcoDI GTCTC 2 cut(s) 239, 533
BfaI CTAG 3 cut(s) 242, 413, 533
BfoI RGCGCY 1 cut(s) 210
BglII AGATCT 1 cut(s) 73
BisI GCNGC 3 cut(s) 138, 216, 379
BlsI GCNGC 3 cut(s) 139, 217, 380
BmcAI AGTACT 1 cut(s) 185
Bme18I GGWCC 2 cut(s) 384, 436
BmeT110I CYCGRG 1 cut(s) 281
BmgT120I GGNCC 2 cut(s) 384, 436
BmiI GGNNCC 6 cut(s) 169, 208, 260, 337, 597, 655
BmsI GCATC 1 cut(s) 227
BmtI GCTAGC 1 cut(s) 536
BplI GAGNNNNNCTC 2 cut(s) 173, 205
BpmI CTGGAG 2 cut(s) 141, 490
BsaAI YACGTR 1 cut(s) 662
BsaBI GATNNNNATC 1 cut(s) 558
BsaHI GRCGYC 2 cut(s) 207, 297
BsaI GGTCTC 1 cut(s) 533
BsaJI CCNNGG 3 cut(s) 202, 210, 599
BsaWI WCCGGW 1 cut(s) 645
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 321
Bse1I ACTGG 1 cut(s) 326
Bse8I GATNNNNATC 1 cut(s) 558
BseDI CCNNGG 3 cut(s) 202, 210, 599
BseGI GGATG 2 cut(s) 294, 559
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 2 cut(s) 164, 321
BseMII CTCAG 2 cut(s) 125, 492
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 3 cut(s) 11, 134, 163
BseXI GCAGC 1 cut(s) 365
Bsh1236I CGCG 1 cut(s) 129
Bsh1285I CGRYCG 1 cut(s) 556
BshFI GGCC 2 cut(s) 215, 240
BshNI GGYRCC 4 cut(s) 167, 206, 335, 653
BsiEI CGRYCG 1 cut(s) 556
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 1 cut(s) 646
BslFI GGGAC 2 cut(s) 264, 284
BslI CCNNNNNNNGG 2 cut(s) 164, 321
BsmAI GTCTC 2 cut(s) 239, 533
BsmFI GGGAC 2 cut(s) 264, 284
BsnI GGCC 2 cut(s) 215, 240
Bso31I GGTCTC 1 cut(s) 533
BsoBI CYCGRG 1 cut(s) 281
Bsp143I GATC 5 cut(s) 16, 73, 291, 553, 613
BspACI CCGC 5 cut(s) 25, 135, 138, 216, 651
BspANI GGCC 2 cut(s) 215, 240
BspCNI CTCAG 2 cut(s) 124, 493
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 6 cut(s) 169, 208, 260, 337, 597, 655
BspOI GCTAGC 1 cut(s) 536
BspT107I GGYRCC 4 cut(s) 167, 206, 335, 653
BspTNI GGTCTC 1 cut(s) 533
BsrBI CCGCTC 1 cut(s) 651
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 3 cut(s) 202, 210, 599
BssMI GATC 5 cut(s) 16, 73, 291, 553, 613
BssNAI GTATAC 1 cut(s) 606
BssNI GRCGYC 2 cut(s) 207, 297
BssSI CACGAG 1 cut(s) 428
BssT1I CCWWGG 3 cut(s) 202, 210, 599
Bst1107I GTATAC 1 cut(s) 606
Bst2BI CACGAG 1 cut(s) 428
Bst4CI ACNGT 2 cut(s) 340, 419
BstACI GRCGYC 2 cut(s) 207, 297
BstBAI YACGTR 1 cut(s) 662
BstC8I GCNNGC 3 cut(s) 311, 534, 550
BstDEI CTNAG 4 cut(s) 111, 222, 501, 528
BstF5I GGATG 2 cut(s) 294, 559
BstFNI CGCG 1 cut(s) 129
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 2 cut(s) 69, 209
BstKTI GATC 5 cut(s) 19, 76, 294, 556, 616
BstMAI GTCTC 2 cut(s) 239, 533
BstMBI GATC 5 cut(s) 16, 73, 291, 553, 613
BstMCI CGRYCG 1 cut(s) 556
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNSI RCATGY 1 cut(s) 463
BstSNI TACGTA 1 cut(s) 662
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 365
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BstZ17I GTATAC 1 cut(s) 606
BsuRI GGCC 2 cut(s) 215, 240
BtgZI GCGATG 1 cut(s) 290
BtsCI GGATG 2 cut(s) 294, 559
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 1 cut(s) 618
Cac8I GCNNGC 3 cut(s) 311, 534, 550
CfoI GCGC 2 cut(s) 69, 209
Cfr13I GGNCC 2 cut(s) 384, 436
CseI GACGC 1 cut(s) 266
Csp6I GTAC 3 cut(s) 184, 199, 654
CviAII CATG 4 cut(s) 274, 317, 460, 545
CviQI GTAC 3 cut(s) 184, 199, 654
DdeI CTNAG 4 cut(s) 111, 222, 501, 528
DinI GGCGCC 1 cut(s) 208
DpnI GATC 5 cut(s) 18, 75, 293, 555, 615
DpnII GATC 5 cut(s) 16, 73, 291, 553, 613
DraI TTTAAA 1 cut(s) 508
EciI GGCGGA 1 cut(s) 14
Eco105I TACGTA 1 cut(s) 662
Eco130I CCWWGG 3 cut(s) 202, 210, 599
Eco147I AGGCCT 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 533
Eco47I GGWCC 2 cut(s) 384, 436
Eco57I CTGAAG 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 281
EcoT14I CCWWGG 3 cut(s) 202, 210, 599
EgeI GGCGCC 1 cut(s) 208
EheI GGCGCC 1 cut(s) 208
ErhI CCWWGG 3 cut(s) 202, 210, 599
FaeI CATG 4 cut(s) 277, 320, 463, 548
FaqI GGGAC 2 cut(s) 264, 284
FatI CATG 4 cut(s) 273, 316, 459, 544
FauNDI CATATG 1 cut(s) 576
FblI GTMKAC 1 cut(s) 605
Fnu4HI GCNGC 3 cut(s) 138, 216, 379
FokI GGATG 2 cut(s) 301, 546
Fsp4HI GCNGC 3 cut(s) 138, 216, 379
FspBI CTAG 3 cut(s) 242, 413, 533
GlaI GCGC 2 cut(s) 68, 208
GluI GCNGC 3 cut(s) 138, 216, 379
GsuI CTGGAG 2 cut(s) 141, 490
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 2 cut(s) 215, 240
HapII CCGG 1 cut(s) 646
HgaI GACGC 1 cut(s) 266
HhaI GCGC 2 cut(s) 69, 209
Hin1I GRCGYC 2 cut(s) 207, 297
Hin1II CATG 4 cut(s) 277, 320, 463, 548
Hin6I GCGC 2 cut(s) 67, 207
HinP1I GCGC 2 cut(s) 67, 207
HinfI GANTC 5 cut(s) 107, 194, 226, 247, 585
HpaII CCGG 1 cut(s) 646
Hpy166II GTNNAC 1 cut(s) 606
Hpy188I TCNGA 3 cut(s) 16, 84, 193
Hpy188III TCNNGA 3 cut(s) 158, 281, 428
Hpy8I GTNNAC 1 cut(s) 606
Hpy99I CGWCG 4 cut(s) 129, 181, 299, 330
HpyAV CCTTC 1 cut(s) 18
HpyCH4III ACNGT 2 cut(s) 340, 419
HpyCH4IV ACGT 2 cut(s) 297, 661
HpyCH4V TGCA 1 cut(s) 495
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 4 cut(s) 111, 222, 501, 528
HpySE526I ACGT 2 cut(s) 297, 661
Hsp92I GRCGYC 2 cut(s) 207, 297
Hsp92II CATG 4 cut(s) 277, 320, 463, 548
HspAI GCGC 2 cut(s) 67, 207
KasI GGCGCC 1 cut(s) 206
KpnI GGTACC 1 cut(s) 657
Kzo9I GATC 5 cut(s) 16, 73, 291, 553, 613
LmnI GCTCC 2 cut(s) 120, 648
Lsp1109I GCAGC 1 cut(s) 365
LweI GCATC 1 cut(s) 227
MaeI CTAG 3 cut(s) 242, 413, 533
MaeII ACGT 2 cut(s) 297, 661
MaeIII GTNAC 2 cut(s) 3, 130
MalI GATC 5 cut(s) 18, 75, 293, 555, 615
MbiI CCGCTC 1 cut(s) 651
MboI GATC 5 cut(s) 16, 73, 291, 553, 613
MboII GAAGA 2 cut(s) 3, 390
MflI RGATCY 1 cut(s) 73
MluCI AATT 1 cut(s) 509
Mly113I GGCGCC 1 cut(s) 207
MlyI GAGTC 2 cut(s) 188, 241
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 8 cut(s) 32, 155, 161, 165, 181, 184, 230, 312
MseI TTAA 2 cut(s) 507, 521
MslI CAYNNNNRTG 1 cut(s) 458
MspI CCGG 1 cut(s) 646
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 215
NarI GGCGCC 1 cut(s) 207
NdeI CATATG 1 cut(s) 576
NdeII GATC 5 cut(s) 16, 73, 291, 553, 613
NheI GCTAGC 1 cut(s) 532
NlaIII CATG 4 cut(s) 277, 320, 463, 548
NlaIV GGNNCC 6 cut(s) 169, 208, 260, 337, 597, 655
NmeAIII GCCGAG 1 cut(s) 562
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 463
PceI AGGCCT 1 cut(s) 240
PciI ACATGT 1 cut(s) 459
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PfeI GAWTC 3 cut(s) 107, 226, 585
PflMI CCANNNNNTGG 1 cut(s) 164
PkrI GCNGC 3 cut(s) 139, 217, 380
Ple19I CGATCG 1 cut(s) 556
PleI GAGTC 2 cut(s) 188, 241
PluTI GGCGCC 1 cut(s) 210
PpsI GAGTC 2 cut(s) 188, 241
Ppu21I YACGTR 1 cut(s) 662
PscI ACATGT 1 cut(s) 459
PspN4I GGNNCC 6 cut(s) 169, 208, 260, 337, 597, 655
PspPI GGNCC 2 cut(s) 384, 436
PsuI RGATCY 1 cut(s) 73
PvuI CGATCG 1 cut(s) 556
RgaI GCGATCGC 1 cut(s) 556
RsaI GTAC 3 cut(s) 185, 200, 655
RsaNI GTAC 3 cut(s) 184, 199, 654
RseI CAYNNNNRTG 1 cut(s) 458
SaqAI TTAA 2 cut(s) 507, 521
SatI GCNGC 3 cut(s) 138, 216, 379
Sau3AI GATC 5 cut(s) 16, 73, 291, 553, 613
Sau96I GGNCC 2 cut(s) 384, 436
ScaI AGTACT 1 cut(s) 185
SchI GAGTC 2 cut(s) 188, 241
SfaAI GCGATCGC 1 cut(s) 556
SfaNI GCATC 1 cut(s) 227
SfoI GGCGCC 1 cut(s) 208
SgfI GCGATCGC 1 cut(s) 556
SinI GGWCC 2 cut(s) 384, 436
SmiMI CAYNNNNRTG 1 cut(s) 458
SnaBI TACGTA 1 cut(s) 662
Sse9I AATT 1 cut(s) 509
SseBI AGGCCT 1 cut(s) 240
SsiI CCGC 5 cut(s) 25, 135, 138, 216, 651
SspDI GGCGCC 1 cut(s) 206
SspMI CTAG 3 cut(s) 242, 413, 533
StuI AGGCCT 1 cut(s) 240
StyI CCWWGG 3 cut(s) 202, 210, 599
TaaI ACNGT 2 cut(s) 340, 419
TaiI ACGT 2 cut(s) 300, 664
TaqI TCGA 3 cut(s) 176, 250, 294
TasI AATT 1 cut(s) 509
TatI WGTACW 1 cut(s) 183
TauI GCSGC 2 cut(s) 140, 218
TfiI GAWTC 3 cut(s) 107, 226, 585
Tru1I TTAA 2 cut(s) 507, 521
Tru9I TTAA 2 cut(s) 507, 521
TscAI CASTG 1 cut(s) 625
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 378
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 335
TspGWI ACGGA 2 cut(s) 21, 194
TspRI CASTG 1 cut(s) 625
Van91I CCANNNNNTGG 1 cut(s) 164
VpaK11BI GGWCC 2 cut(s) 384, 436
XapI RAATTY 1 cut(s) 509
XceI RCATGY 1 cut(s) 463
XmiI GTMKAC 1 cut(s) 605
XspI CTAG 3 cut(s) 242, 413, 533
ZraI GACGTC 1 cut(s) 298
ZrmI AGTACT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.