RchiOBHm_Chr4g0411421

Ribosomal protein S1-like RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0005054
Physical Location & Seq
Reverse (-)
35297571 .. 35304481
6911 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1266 bp
ATGTCTTCCACACCAAAAAAATATGATACGTTATCCAATCCCCCATTTTGCAAAACCCACAATCCAAATGCTAATGCTGCTGCCCTGAATCTCTGTTCTCCATTCCCATTATTCAAACCAAGGAAAATGCCTATATACACTGCAACTCTGGCCCTTGGATCAGTCTCACGGCTCTTGTTCATCACCAGCGATGCCTCCTCCTCCTCCTCCTCTAATACTTGCTCAGTCTCTTCTTGTTTCTTAAACCACTCCAACTTCCCAAAGCAATCCCACAAGTCTGTCAGCAAGAAGAGAACCTCTCTAGTTTGCGCTGCCAGCAAGACTGAAGTGCAAGACTCCTCTCCCTCTACTGAGCAGGCTCGGAGGTCTGCTGATTGGAAGGTAGCAAAAGCTTACAGTGATAGTGGATTCATCTTTGATGGGATGGTTGAAGGGTATAACAGTGGAGGTTTGCTGGTTCGGTTTCATTCTTTAGTGGGTTTTCTTCCATTTCCACAATTGAGCCCATCACACTTCTGCCAAGAACCGGGGAAAGGCGTCCAGGAGATTGCAAAAGGATTACTTGGTTCTCTTATATCTGTTAAGATAATCCAAGCAGATGAAGAGAACAAGAAACTGATATTCTCAGAAAAGGAAGCTGTCTGGTCCAAGTTTTCTGAGAAAATTAGTGTTGGGGATGTTTTTGAAGCTAGGGTTGGTTCTGTGGAGGATTACGGTGCTTTTGTTCATCTACTATTTCCTGATGGTCTTTATCATTTGACTGGACTAGTACATGTCTCGGAGGTTTCATGGGATCTAGTTCAGGATGTAAGAGACATTTTGTCGGAGGGCGATGCAGTAAGAGTTAAGATCATTAATATTGATCGAGAAAAGTCAAGAATCACATTATCAATTAAACAGTTGGAGGAAGATCCACTTTTAGAAACATTGGACAAAGTGATACCCCAGGATGGCTCTGACGGTCCTGATTCTTTGAACCCTAACAATAGCAATAATATAGAACCTCTTCCAGGCCTTGAAGCCATATTCGAAGAGCTACTACAGGAAGATGGAATAGATGATGTAGGAATCACTCGCCAAGGATTTGAGAAAAGGGTGGTTTCACAGGACCTGCAGCTTTGGCTTTCCAATTCACCAGCCATTAACCAGAAGTTTACTCTCCTTGCTCGGGCAGGAAGGCAGGTACAGGAAATACAACTGACGACAACACTTGATCAGGAAGGTATAAAACAAGCACTCCAGCGAGTGTTGGAGCGTGTCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
S1

Protein Analysis

421

Amino Acids

46.33

Weight (kDa)

5.61

Isoelectric Point (pI)

53.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1 PF00575 223 - 299 1.6e-17 S1 RNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1119, 1171
AclWI GGATC 3 cut(s) 166, 801, 905
AcuI CTGAAG 1 cut(s) 345
AcyI GRCGYC 1 cut(s) 537
AfaI GTAC 2 cut(s) 771, 1185
AfiI CCNNNNNNNGG 5 cut(s) 526, 533, 950, 1010, 1168
AflIII ACRYGT 1 cut(s) 772
AgsI TTSAA 5 cut(s) 115, 431, 686, 976, 1019
AhdI GACNNNNNGTC 1 cut(s) 820
AhlI ACTAGT 1 cut(s) 766
AjnI CCWGG 3 cut(s) 540, 945, 1009
AjuI GAANNNNNNNTTGG 2 cut(s) 678, 710
AluBI AGCT 5 cut(s) 392, 638, 689, 1036, 1117
AluI AGCT 5 cut(s) 392, 638, 689, 1036, 1117
Alw26I GTCTC 4 cut(s) 169, 232, 781, 807
AlwI GGATC 3 cut(s) 166, 801, 905
AlwNI CAGNNNCTG 1 cut(s) 1111
Ama87I CYCGRG 1 cut(s) 1167
AoxI GGCC 2 cut(s) 150, 1012
ApeKI GCWGC 4 cut(s) 77, 80, 311, 1114
AseI ATTAAT 1 cut(s) 855
Asp700I GAANNNNTTC 1 cut(s) 1005
AspLEI GCGC 1 cut(s) 311
AspS9I GGNCC 4 cut(s) 151, 645, 962, 1108
AsuC2I CCSGG 1 cut(s) 528
AsuHPI GGTGA 2 cut(s) 175, 1125
AsuII TTCGAA 1 cut(s) 1029
AvaI CYCGRG 1 cut(s) 1167
AvaII GGWCC 3 cut(s) 645, 962, 1108
BanII GRGCYC 1 cut(s) 506
BarI GAAGNNNNNNTAC 2 cut(s) 1023, 1055
BbvI GCAGC 4 cut(s) 64, 67, 298, 1126
BccI CCATC 6 cut(s) 413, 418, 514, 737, 944, 1043
BceAI ACGGC 1 cut(s) 185
BciT130I CCWGG 3 cut(s) 542, 947, 1011
BclI TGATCA 1 cut(s) 1213
BcnI CCSGG 1 cut(s) 528
BcoDI GTCTC 4 cut(s) 169, 232, 781, 807
BcuI ACTAGT 1 cut(s) 766
BfaI CTAG 4 cut(s) 302, 690, 767, 797
BfmI CTRYAG 2 cut(s) 1040, 1112
BfuAI ACCTGC 2 cut(s) 1119, 1171
BisI GCNGC 4 cut(s) 78, 81, 312, 1115
BlsI GCNGC 4 cut(s) 79, 82, 313, 1116
Bme1390I CCNGG 4 cut(s) 528, 542, 947, 1011
Bme18I GGWCC 3 cut(s) 645, 962, 1108
BmeRI GACNNNNNGTC 1 cut(s) 820
BmeT110I CYCGRG 1 cut(s) 1167
BmgT120I GGNCC 4 cut(s) 151, 645, 962, 1108
BmrFI CCNGG 4 cut(s) 528, 542, 947, 1011
BmsI GCATC 2 cut(s) 181, 823
BplI GAGNNNNNCTC 2 cut(s) 283, 315
BpmI CTGGAG 1 cut(s) 1223
Bpu14I TTCGAA 1 cut(s) 1029
BpuMI CCSGG 1 cut(s) 528
BsaHI GRCGYC 1 cut(s) 537
BsaJI CCNNGG 5 cut(s) 119, 154, 527, 945, 1078
BsaXI ACNNNNNCTCC 2 cut(s) 1221, 1251
Bsc4I CCNNNNNNNGG 5 cut(s) 526, 533, 950, 1010, 1168
Bse1I ACTGG 1 cut(s) 766
BseBI CCWGG 3 cut(s) 542, 947, 1011
BseDI CCNNGG 5 cut(s) 119, 154, 527, 945, 1078
BseGI GGATG 4 cut(s) 429, 682, 811, 955
BseLI CCNNNNNNNGG 5 cut(s) 526, 533, 950, 1010, 1168
BseMII CTCAG 4 cut(s) 237, 342, 639, 648
BseNI ACTGG 1 cut(s) 766
BseRI GAGGAG 6 cut(s) 187, 190, 193, 196, 199, 328
BseXI GCAGC 4 cut(s) 64, 67, 298, 1126
BshFI GGCC 2 cut(s) 152, 1014
BsiHKCI CYCGRG 1 cut(s) 1167
BsiSI CCGG 1 cut(s) 527
BslFI GGGAC 1 cut(s) 1244
BslI CCNNNNNNNGG 5 cut(s) 526, 533, 950, 1010, 1168
BsmAI GTCTC 4 cut(s) 169, 232, 781, 807
BsmFI GGGAC 1 cut(s) 1244
BsnI GGCC 2 cut(s) 152, 1014
BsoBI CYCGRG 1 cut(s) 1167
Bsp119I TTCGAA 1 cut(s) 1029
Bsp1286I GDGCHC 1 cut(s) 506
Bsp143I GATC 6 cut(s) 158, 793, 849, 862, 910, 1213
BspANI GGCC 2 cut(s) 152, 1014
BspCNI CTCAG 4 cut(s) 236, 343, 638, 649
BspMAI CTGCAG 1 cut(s) 1116
BspMI ACCTGC 2 cut(s) 1119, 1171
BspPI GGATC 3 cut(s) 166, 801, 905
BspQI GCTCTTC 1 cut(s) 1026
BspT104I TTCGAA 1 cut(s) 1029
BsrI ACTGG 1 cut(s) 766
BssECI CCNNGG 5 cut(s) 119, 154, 527, 945, 1078
BssMI GATC 6 cut(s) 158, 793, 849, 862, 910, 1213
BssNI GRCGYC 1 cut(s) 537
BssT1I CCWWGG 3 cut(s) 119, 154, 1078
Bst2UI CCWGG 3 cut(s) 542, 947, 1011
Bst4CI ACNGT 5 cut(s) 398, 443, 716, 900, 962
Bst6I CTCTTC 5 cut(s) 235, 284, 597, 1011, 1026
BstACI GRCGYC 1 cut(s) 537
BstBI TTCGAA 1 cut(s) 1029
BstC8I GCNNGC 2 cut(s) 316, 357
BstDEI CTNAG 4 cut(s) 223, 351, 625, 657
BstENI CCTNNNNNAGG 1 cut(s) 1008
BstF5I GGATG 4 cut(s) 429, 682, 811, 955
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 6 cut(s) 161, 796, 852, 865, 913, 1216
BstMAI GTCTC 4 cut(s) 169, 232, 781, 807
BstMBI GATC 6 cut(s) 158, 793, 849, 862, 910, 1213
BstMWI GCNNNNNNNGC 4 cut(s) 77, 149, 315, 1120
BstNI CCWGG 3 cut(s) 542, 947, 1011
BstNSI RCATGY 1 cut(s) 776
BstSCI CCNGG 4 cut(s) 526, 540, 945, 1009
BstSFI CTRYAG 2 cut(s) 1040, 1112
BstV1I GCAGC 4 cut(s) 64, 67, 298, 1126
BstX2I RGATCY 2 cut(s) 793, 910
BstYI RGATCY 2 cut(s) 793, 910
BsuRI GGCC 2 cut(s) 152, 1014
BtgZI GCGATG 2 cut(s) 204, 846
BtsCI GGATG 4 cut(s) 429, 682, 811, 955
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 3 cut(s) 138, 403, 448
BveI ACCTGC 2 cut(s) 1119, 1171
Cac8I GCNNGC 2 cut(s) 316, 357
CaiI CAGNNNCTG 1 cut(s) 1111
CfoI GCGC 1 cut(s) 311
Cfr13I GGNCC 4 cut(s) 151, 645, 962, 1108
CseI GACGC 1 cut(s) 526
Csp6I GTAC 2 cut(s) 770, 1184
CviAII CATG 2 cut(s) 773, 789
CviQI GTAC 2 cut(s) 770, 1184
DdeI CTNAG 4 cut(s) 223, 351, 625, 657
DpnI GATC 6 cut(s) 160, 795, 851, 864, 912, 1215
DpnII GATC 6 cut(s) 158, 793, 849, 862, 910, 1213
DriI GACNNNNNGTC 1 cut(s) 820
Eam1104I CTCTTC 5 cut(s) 235, 284, 597, 1011, 1026
Eam1105I GACNNNNNGTC 1 cut(s) 820
EarI CTCTTC 5 cut(s) 235, 284, 597, 1011, 1026
Eco130I CCWWGG 3 cut(s) 119, 154, 1078
Eco147I AGGCCT 1 cut(s) 1014
Eco24I GRGCYC 1 cut(s) 506
Eco47I GGWCC 3 cut(s) 645, 962, 1108
Eco57I CTGAAG 1 cut(s) 345
Eco88I CYCGRG 1 cut(s) 1167
EcoNI CCTNNNNNAGG 1 cut(s) 1008
EcoO109I RGGNCCY 1 cut(s) 1108
EcoRII CCWGG 3 cut(s) 540, 945, 1009
EcoT14I CCWWGG 3 cut(s) 119, 154, 1078
EcoT38I GRGCYC 1 cut(s) 506
ErhI CCWWGG 3 cut(s) 119, 154, 1078
FaeI CATG 2 cut(s) 776, 792
FalI AAGNNNNNCTT 4 cut(s) 546, 578, 900, 932
FaqI GGGAC 1 cut(s) 1244
FatI CATG 2 cut(s) 772, 788
FbaI TGATCA 1 cut(s) 1213
Fnu4HI GCNGC 4 cut(s) 78, 81, 312, 1115
FokI GGATG 4 cut(s) 436, 689, 818, 962
FriOI GRGCYC 1 cut(s) 506
Fsp4HI GCNGC 4 cut(s) 78, 81, 312, 1115
FspBI CTAG 4 cut(s) 302, 690, 767, 797
GlaI GCGC 1 cut(s) 310
GluI GCNGC 4 cut(s) 78, 81, 312, 1115
GsuI CTGGAG 1 cut(s) 1223
HaeIII GGCC 2 cut(s) 152, 1014
HapII CCGG 1 cut(s) 527
HgaI GACGC 1 cut(s) 526
HhaI GCGC 1 cut(s) 311
Hin1I GRCGYC 1 cut(s) 537
Hin1II CATG 2 cut(s) 776, 792
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HindIII AAGCTT 1 cut(s) 390
HinfI GANTC 6 cut(s) 88, 335, 408, 879, 968, 1068
HpaII CCGG 1 cut(s) 527
HphI GGTGA 2 cut(s) 175, 1125
Hpy166II GTNNAC 1 cut(s) 1155
Hpy188I TCNGA 6 cut(s) 363, 628, 658, 781, 826, 958
Hpy188III TCNNGA 6 cut(s) 740, 803, 866, 876, 965, 1217
Hpy8I GTNNAC 1 cut(s) 1155
HpyAV CCTTC 4 cut(s) 373, 425, 1170, 1214
HpyCH4III ACNGT 5 cut(s) 398, 443, 716, 900, 962
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 6 cut(s) 51, 143, 331, 551, 836, 1114
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 149, 315, 1120
HpyF3I CTNAG 4 cut(s) 223, 351, 625, 657
HpySE526I ACGT 1 cut(s) 29
Hsp92I GRCGYC 1 cut(s) 537
Hsp92II CATG 2 cut(s) 776, 792
HspAI GCGC 1 cut(s) 309
Ksp22I TGATCA 1 cut(s) 1213
Kzo9I GATC 6 cut(s) 158, 793, 849, 862, 910, 1213
LguI GCTCTTC 1 cut(s) 1026
LmnI GCTCC 1 cut(s) 1252
Lsp1109I GCAGC 4 cut(s) 64, 67, 298, 1126
LweI GCATC 2 cut(s) 181, 823
MaeI CTAG 4 cut(s) 302, 690, 767, 797
MaeII ACGT 1 cut(s) 29
MalI GATC 6 cut(s) 160, 795, 851, 864, 912, 1215
MboI GATC 6 cut(s) 158, 793, 849, 862, 910, 1213
MboII GAAGA 8 cut(s) 222, 301, 476, 614, 920, 998, 1043, 1058
MfeI CAATTG 1 cut(s) 497
MflI RGATCY 2 cut(s) 793, 910
MhlI GDGCHC 1 cut(s) 506
MluCI AATT 4 cut(s) 497, 663, 891, 1129
MlyI GAGTC 1 cut(s) 329
MmeI TCCRAC 4 cut(s) 276, 804, 882, 1230
MroXI GAANNNNTTC 1 cut(s) 1005
MseI TTAA 6 cut(s) 242, 582, 846, 855, 894, 1143
MspI CCGG 1 cut(s) 527
MspR9I CCNGG 4 cut(s) 528, 542, 947, 1011
MunI CAATTG 1 cut(s) 497
MvaI CCWGG 3 cut(s) 542, 947, 1011
MwoI GCNNNNNNNGC 4 cut(s) 77, 149, 315, 1120
NciI CCSGG 1 cut(s) 528
NdeII GATC 6 cut(s) 158, 793, 849, 862, 910, 1213
NlaIII CATG 2 cut(s) 776, 792
NspI RCATGY 1 cut(s) 776
NspV TTCGAA 1 cut(s) 1029
PceI AGGCCT 1 cut(s) 1014
PciI ACATGT 1 cut(s) 772
PciSI GCTCTTC 1 cut(s) 1026
PdmI GAANNNNTTC 1 cut(s) 1005
PfeI GAWTC 5 cut(s) 88, 408, 879, 968, 1068
PfoI TCCNGGA 1 cut(s) 540
PkrI GCNGC 4 cut(s) 79, 82, 313, 1116
PleI GAGTC 1 cut(s) 329
PpsI GAGTC 1 cut(s) 329
PpuMI RGGWCCY 1 cut(s) 1108
PscI ACATGT 1 cut(s) 772
PshBI ATTAAT 1 cut(s) 855
Psp5II RGGWCCY 1 cut(s) 1108
Psp6I CCWGG 3 cut(s) 540, 945, 1009
PspGI CCWGG 3 cut(s) 540, 945, 1009
PspPI GGNCC 4 cut(s) 151, 645, 962, 1108
PspPPI RGGWCCY 1 cut(s) 1108
PstI CTGCAG 1 cut(s) 1116
PstNI CAGNNNCTG 1 cut(s) 1111
PsuI RGATCY 2 cut(s) 793, 910
RsaI GTAC 2 cut(s) 771, 1185
RsaNI GTAC 2 cut(s) 770, 1184
SapI GCTCTTC 1 cut(s) 1026
SaqAI TTAA 6 cut(s) 242, 582, 846, 855, 894, 1143
SatI GCNGC 4 cut(s) 78, 81, 312, 1115
Sau3AI GATC 6 cut(s) 158, 793, 849, 862, 910, 1213
Sau96I GGNCC 4 cut(s) 151, 645, 962, 1108
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 4 cut(s) 528, 542, 947, 1011
SduI GDGCHC 1 cut(s) 506
SfaNI GCATC 2 cut(s) 181, 823
SfcI CTRYAG 2 cut(s) 1040, 1112
SfuI TTCGAA 1 cut(s) 1029
SinI GGWCC 3 cut(s) 645, 962, 1108
SpeI ACTAGT 1 cut(s) 766
Sse9I AATT 4 cut(s) 497, 663, 891, 1129
SseBI AGGCCT 1 cut(s) 1014
SspI AATATT 1 cut(s) 859
SspMI CTAG 4 cut(s) 302, 690, 767, 797
StuI AGGCCT 1 cut(s) 1014
StyD4I CCNGG 4 cut(s) 526, 540, 945, 1009
StyI CCWWGG 3 cut(s) 119, 154, 1078
TaaI ACNGT 5 cut(s) 398, 443, 716, 900, 962
TaiI ACGT 1 cut(s) 32
TaqI TCGA 2 cut(s) 865, 1029
TasI AATT 4 cut(s) 497, 663, 891, 1129
TatI WGTACW 1 cut(s) 769
TfiI GAWTC 5 cut(s) 88, 408, 879, 968, 1068
Tru1I TTAA 6 cut(s) 242, 582, 846, 855, 894, 1143
Tru9I TTAA 6 cut(s) 242, 582, 846, 855, 894, 1143
TscAI CASTG 3 cut(s) 145, 403, 448
TseI GCWGC 4 cut(s) 77, 80, 311, 1114
TspDTI ATGAA 6 cut(s) 169, 400, 455, 615, 716, 777
TspRI CASTG 3 cut(s) 145, 403, 448
VpaK11BI GGWCC 3 cut(s) 645, 962, 1108
VspI ATTAAT 1 cut(s) 855
XagI CCTNNNNNAGG 1 cut(s) 1008
XceI RCATGY 1 cut(s) 776
XmnI GAANNNNTTC 1 cut(s) 1005
XspI CTAG 4 cut(s) 302, 690, 767, 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.