Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013654

Physical Location & Seq

Genomic Coordinates Reverse (-)

36752857 .. 36754802

Gene Structure 1946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGGATACCATCTTCGATTGACGCTTCATATCTCTACGTTCCAAGCTTCGTTTCACTTAAAGATGTCTTTGGGGGTAATAACTCAAAGACTGATAGAGAAAAGAGGACCCAAGAAGGCACAAACAACACATAATGACAAAGAAGAAGCAGAGCAATTGCACGGCATTGATAAGACACCCTACCTTCTGCAATTGCCAAACCACGTAATAGTTGACATCCACTGTAAAATCCCAATCAAGACACTCATCAAATGCAGGCGAGTATGCAAGTCTTGGCGATCTTTGTTCTCAGATCCTCGATTCACCAAAGACCTATTTGCCAGAACACCCGCTTGCCATTTGGTGATAGCTTCGTGTAGGTACTTCTTGCTCGACTTCAACGATGCTTCGAGCCCAAACGGTGTGGCAGCACTGAAAACGACATTTCATAGAAGCAGCGAAGACATTGTGGGATCATGTAATGGCTTCCTCTGCTTGTACAAGAAGGAGCTAAATCGTCACGGATTTTACATATCCAATCCCATTACATGTGAGTCTTTACCTGTTCCAAAACCTATCAAGCAAGATGATCCTCCTCCCATTTCTTGTGGGCCTTCTGCTGATGCCATCACTAATAACATATTGGCTTTTCTAGAATCCACTCGTCCAAAGTCTGTTAAGGAAATTGTGTATCAATCTTGTTGTGCATTTGGGTTTGGGTTTGGGTTTAGTCACATCAGTGGTGTCTACAAAGTAGTTCTCTTTACTTCTTCAAGGTTAATAGAAGCTTCATCTCCGCGTGAGTTTGTGCTTAGAAGTGGACCTCCGAAGGTGATGGTTCTGACTGTTGGCTCTGCGAGTTGGAGACATATTGGGGACTCTGTTATGTGCAATTTTGACCATCAGTCAGGAATTTATCTTAATGGGATGTCTTCATTGGATAGGTCTACCCACTCAGGGTTCTCATTTTATATATGCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

320

Amino Acids

35.78

Weight (kDa)

9.14

Isoelectric Point (pI)

56.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	62 - 103	2.9e-09	F-box domain
F-box-like	PF12937	63 - 106	8.3e-08	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013654)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13040 FvH4_4g13060
malus_domestica	MD04G1020200.v1.1
rosa_chinensis	RchiOBHm_Chr4g0412781 RchiOBHm_Chr4g0412791
rosa_laevigata	RLG00000008259
rosa_multiflora	Rmu_sc0001238.1_g000047 Rmu_sc0001569.1_g000012 Rmu_sc0041034.1_g000001
rosa_roxburghii	Rroxscaffold_5G00357040
rosa_rugosa	Rorug04G0116800
rosa_samantha	Rh4AG175500 Rh4BG175300 Rh4BG175400 Rh4CG186700 Rh4DG172300 Rh6CG426300
rosa_wichuraiana	Rw4G014730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	726, 926
AccII	CGCG	1 cut(s)	778
AciI	CCGC	2 cut(s)	330, 776
AclWI	GGATC	3 cut(s)	287, 460, 563
AcsI	RAATTY	1 cut(s)	891
AfaI	GTAC	2 cut(s)	362, 479
AfiI	CCNNNNNNNGG	1 cut(s)	936
AflIII	ACRYGT	1 cut(s)	527
AgsI	TTSAA	2 cut(s)	379, 753
AhdI	GACNNNNNGTC	1 cut(s)	883
AjuI	GAANNNNNNNTTGG	2 cut(s)	36, 68
AleI	CACNNNNGTG	1 cut(s)	717
AluBI	AGCT	4 cut(s)	47, 350, 490, 767
AluI	AGCT	4 cut(s)	47, 350, 490, 767
Alw26I	GTCTC	1 cut(s)	838
AlwI	GGATC	3 cut(s)	287, 460, 563
AoxI	GGCC	1 cut(s)	590
ApeKI	GCWGC	2 cut(s)	407, 435
ApoI	RAATTY	1 cut(s)	891
AspS9I	GGNCC	3 cut(s)	107, 590, 800
AsuHPI	GGTGA	3 cut(s)	295, 355, 823
AvaII	GGWCC	2 cut(s)	107, 800
BanII	GRGCYC	1 cut(s)	395
BbsI	GAAGAC	2 cut(s)	447, 903
BbvI	GCAGC	2 cut(s)	419, 447
BccI	CCATC	4 cut(s)	18, 614, 808, 888
BceAI	ACGGC	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	838
BfaI	CTAG	1 cut(s)	632
BisI	GCNGC	2 cut(s)	408, 436
BlsI	GCNGC	2 cut(s)	409, 437
Bme18I	GGWCC	2 cut(s)	107, 800
BmeRI	GACNNNNNGTC	1 cut(s)	883
BmgT120I	GGNCC	3 cut(s)	107, 590, 800
BmiI	GGNNCC	1 cut(s)	109
BmsI	GCATC	2 cut(s)	373, 592
BpiI	GAAGAC	2 cut(s)	447, 903
BsaAI	YACGTR	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	1 cut(s)	936
BseGI	GGATG	2 cut(s)	216, 912
BseLI	CCNNNNNNNGG	1 cut(s)	936
BseMII	CTCAG	2 cut(s)	303, 948
BseRI	GAGGAG	1 cut(s)	564
BseXI	GCAGC	2 cut(s)	419, 447
Bsh1236I	CGCG	1 cut(s)	778
BshFI	GGCC	1 cut(s)	592
BslFI	GGGAC	1 cut(s)	869
BslI	CCNNNNNNNGG	1 cut(s)	936
BsmAI	GTCTC	1 cut(s)	838
BsmFI	GGGAC	1 cut(s)	869
BsnI	GGCC	1 cut(s)	592
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	4 cut(s)	278, 292, 452, 568
BspACI	CCGC	2 cut(s)	330, 776
BspANI	GGCC	1 cut(s)	592
BspCNI	CTCAG	2 cut(s)	302, 947
BspFNI	CGCG	1 cut(s)	778
BspLI	GGNNCC	1 cut(s)	109
BspPI	GGATC	3 cut(s)	287, 460, 563
BsrGI	TGTACA	1 cut(s)	477
BssMI	GATC	4 cut(s)	278, 292, 452, 568
Bst4CI	ACNGT	3 cut(s)	224, 401, 826
BstAUI	TGTACA	1 cut(s)	477
BstBAI	YACGTR	1 cut(s)	205
BstC8I	GCNNGC	2 cut(s)	257, 334
BstDEI	CTNAG	3 cut(s)	289, 791, 934
BstF5I	GGATG	2 cut(s)	216, 912
BstFNI	CGCG	1 cut(s)	778
BstKTI	GATC	4 cut(s)	281, 295, 455, 571
BstMAI	GTCTC	1 cut(s)	838
BstMBI	GATC	4 cut(s)	278, 292, 452, 568
BstMWI	GCNNNNNNNGC	1 cut(s)	471
BstNSI	RCATGY	1 cut(s)	531
BstUI	CGCG	1 cut(s)	778
BstV1I	GCAGC	2 cut(s)	419, 447
BstV2I	GAAGAC	2 cut(s)	447, 903
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	592
BtsCI	GGATG	2 cut(s)	216, 912
BtsIMutI	CAGTG	3 cut(s)	220, 410, 724
Cac8I	GCNNGC	2 cut(s)	257, 334
Cfr13I	GGNCC	3 cut(s)	107, 590, 800
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	2 cut(s)	361, 478
CspCI	CAANNNNNGTGG	2 cut(s)	384, 419
CviAII	CATG	2 cut(s)	456, 528
CviJI	RGCY	9 cut(s)	47, 350, 393, 465, 490, 592, 626, 767, 831
CviKI_1	RGCY	9 cut(s)	47, 350, 393, 465, 490, 592, 626, 767, 831
CviQI	GTAC	2 cut(s)	361, 478
DdeI	CTNAG	3 cut(s)	289, 791, 934
DpnI	GATC	4 cut(s)	280, 294, 454, 570
DpnII	GATC	4 cut(s)	278, 292, 452, 568
DriI	GACNNNNNGTC	1 cut(s)	883
Eam1105I	GACNNNNNGTC	1 cut(s)	883
Eco24I	GRGCYC	1 cut(s)	395
Eco47I	GGWCC	2 cut(s)	107, 800
EcoO109I	RGGNCCY	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	395
FaeI	CATG	2 cut(s)	459, 531
FaqI	GGGAC	1 cut(s)	869
FatI	CATG	2 cut(s)	455, 527
FauI	CCCGC	1 cut(s)	337
FblI	GTMKAC	2 cut(s)	726, 926
Fnu4HI	GCNGC	2 cut(s)	408, 436
FokI	GGATG	2 cut(s)	203, 919
FriOI	GRGCYC	1 cut(s)	395
Fsp4HI	GCNGC	2 cut(s)	408, 436
FspBI	CTAG	1 cut(s)	632
GluI	GCNGC	2 cut(s)	408, 436
HaeIII	GGCC	1 cut(s)	592
HgaI	GACGC	1 cut(s)	31
Hin1II	CATG	2 cut(s)	459, 531
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HindIII	AAGCTT	2 cut(s)	45, 765
HinfI	GANTC	4 cut(s)	300, 533, 635, 857
HphI	GGTGA	3 cut(s)	295, 355, 823
Hpy166II	GTNNAC	4 cut(s)	214, 727, 800, 927
Hpy188I	TCNGA	3 cut(s)	292, 807, 822
Hpy188III	TCNNGA	3 cut(s)	238, 632, 888
Hpy8I	GTNNAC	4 cut(s)	214, 727, 800, 927
HpyAV	CCTTC	5 cut(s)	109, 194, 478, 603, 802
HpyCH4III	ACNGT	3 cut(s)	224, 401, 826
HpyCH4IV	ACGT	2 cut(s)	38, 204
HpyCH4V	TGCA	6 cut(s)	160, 190, 255, 267, 686, 870
HpyF10VI	GCNNNNNNNGC	1 cut(s)	471
HpyF3I	CTNAG	3 cut(s)	289, 791, 934
HpySE526I	ACGT	2 cut(s)	38, 204
Hsp92II	CATG	2 cut(s)	459, 531
Kzo9I	GATC	4 cut(s)	278, 292, 452, 568
LmnI	GCTCC	1 cut(s)	487
LpnPI	CCDG	5 cut(s)	241, 334, 555, 873, 921
Lsp1109I	GCAGC	2 cut(s)	419, 447
LweI	GCATC	2 cut(s)	373, 592
MaeI	CTAG	1 cut(s)	632
MaeII	ACGT	2 cut(s)	38, 204
MaeIII	GTNAC	2 cut(s)	497, 710
MalI	GATC	4 cut(s)	280, 294, 454, 570
MboI	GATC	4 cut(s)	278, 292, 452, 568
MboII	GAAGA	5 cut(s)	5, 155, 452, 741, 903
MfeI	CAATTG	2 cut(s)	155, 191
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	1 cut(s)	395
MluCI	AATT	5 cut(s)	155, 191, 663, 871, 891
MlyI	GAGTC	2 cut(s)	542, 851
MmeI	TCCRAC	1 cut(s)	821
MnlI	CCTC	6 cut(s)	98, 306, 479, 582, 585, 813
MseI	TTAA	4 cut(s)	59, 657, 758, 900
MslI	CAYNNNNRTG	1 cut(s)	717
MunI	CAATTG	2 cut(s)	155, 191
MvnI	CGCG	1 cut(s)	778
MwoI	GCNNNNNNNGC	1 cut(s)	471
NdeII	GATC	4 cut(s)	278, 292, 452, 568
NlaIII	CATG	2 cut(s)	459, 531
NlaIV	GGNNCC	1 cut(s)	109
NmuCI	GTSAC	2 cut(s)	497, 710
NspI	RCATGY	1 cut(s)	531
OliI	CACNNNNGTG	1 cut(s)	717
PciI	ACATGT	1 cut(s)	527
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	300, 635
PkrI	GCNGC	2 cut(s)	409, 437
PleI	GAGTC	2 cut(s)	541, 851
PpsI	GAGTC	2 cut(s)	541, 851
Ppu21I	YACGTR	1 cut(s)	205
PpuMI	RGGWCCY	1 cut(s)	107
PscI	ACATGT	1 cut(s)	527
Psp5II	RGGWCCY	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	109
PspPI	GGNCC	3 cut(s)	107, 590, 800
PspPPI	RGGWCCY	1 cut(s)	107
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	2 cut(s)	362, 479
RsaNI	GTAC	2 cut(s)	361, 478
RseI	CAYNNNNRTG	1 cut(s)	717
SaqAI	TTAA	4 cut(s)	59, 657, 758, 900
SatI	GCNGC	2 cut(s)	408, 436
Sau3AI	GATC	4 cut(s)	278, 292, 452, 568
Sau96I	GGNCC	3 cut(s)	107, 590, 800
SchI	GAGTC	2 cut(s)	542, 851
SduI	GDGCHC	1 cut(s)	395
SfaNI	GCATC	2 cut(s)	373, 592
SinI	GGWCC	2 cut(s)	107, 800
SmiMI	CAYNNNNRTG	1 cut(s)	717
Sse9I	AATT	5 cut(s)	155, 191, 663, 871, 891
SsiI	CCGC	2 cut(s)	330, 776
SspMI	CTAG	1 cut(s)	632
TaaI	ACNGT	3 cut(s)	224, 401, 826
TaiI	ACGT	2 cut(s)	41, 207
TaqI	TCGA	4 cut(s)	16, 298, 372, 389
TasI	AATT	5 cut(s)	155, 191, 663, 871, 891
TatI	WGTACW	1 cut(s)	477
TfiI	GAWTC	2 cut(s)	300, 635
Tru1I	TTAA	4 cut(s)	59, 657, 758, 900
Tru9I	TTAA	4 cut(s)	59, 657, 758, 900
TscAI	CASTG	3 cut(s)	227, 417, 724
TseFI	GTSAC	2 cut(s)	497, 710
TseI	GCWGC	2 cut(s)	407, 435
Tsp45I	GTSAC	2 cut(s)	497, 710
TspDTI	ATGAA	4 cut(s)	17, 416, 759, 903
TspGWI	ACGGA	1 cut(s)	516
TspRI	CASTG	3 cut(s)	227, 417, 724
VpaK11BI	GGWCC	2 cut(s)	107, 800
XapI	RAATTY	1 cut(s)	891
XbaI	TCTAGA	1 cut(s)	631
XceI	RCATGY	1 cut(s)	531
XmiI	GTMKAC	2 cut(s)	726, 926
XspI	CTAG	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.