RchiOBHm_Chr4g0433751

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0016027
Physical Location & Seq
Reverse (-)
57758655 .. 57759369
715 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 432 bp
ATGCTAACGCAAGTCACAAAATTCATAGACCAAATCTACATGCTTGGCACTCGCCGAATTGCTTTGTTTTCACTAGGGCCTGTTGGCTGTGTTCCAGCCAGGGCACTCCTGCCAGGTGCACCCATTAATCGATGTTTTGGAAAGATGAACTTGATGGTTAAGAAGTACAACAAGGGACGTACTGGAATGTTTGATTTTTCGGACGTATCGAGCGCATGTTGCGGCGGAGGTACTATAGGAGGATTGCTGCAATGTGGGAAGGAGGGATACAAGACATGTGCAAACCCTAATGAGTTCTTATTCTGGGATTACTTCCATCCATCAGAGCATGCTTACAGGCTCATATCCAAGGCCTTGTGGGGTGGAAAGAAATATCGAATTAGACCACTTAATTTGAAGGCTCTAGCCAACATCACCCTCACTGGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016298 GO:0016787 GO:0016788
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

143

Amino Acids

15.79

Weight (kDa)

9.73

Isoelectric Point (pI)

32.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 3 - 119 2e-06 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71120
prunus_persica Prupe.1G321500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0433751 RchiOBHm_Chr4g0433761
rosa_laevigata RLG00000006733
rosa_multiflora Rmu_sc0006151.1_g000003
rosa_roxburghii Rroxscaffold_5G00375190
rosa_rugosa Rorug04G0271300
rosa_samantha Rh4AG325800 Rh4AG325900 Rh4BG333600 Rh4CG348800 Rh4DG330200 Rh4DG330300
rosa_wichuraiana Rw4G028220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 222, 225
AcsI RAATTY 1 cut(s) 20
AfaI GTAC 3 cut(s) 167, 181, 232
AflIII ACRYGT 1 cut(s) 275
AgsI TTSAA 1 cut(s) 397
AjnI CCWGG 2 cut(s) 98, 112
Alw21I GWGCWC 1 cut(s) 121
Alw44I GTGCAC 1 cut(s) 117
AoxI GGCC 2 cut(s) 77, 351
ApaLI GTGCAC 1 cut(s) 117
ApeKI GCWGC 1 cut(s) 247
ApoI RAATTY 1 cut(s) 20
AseI ATTAAT 1 cut(s) 126
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 406
BaeGI GKGCMC 2 cut(s) 106, 121
BarI GAAGNNNNNNTAC 2 cut(s) 251, 283
Bbv12I GWGCWC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 234
BccI CCATC 3 cut(s) 148, 324, 328
BciT130I CCWGG 2 cut(s) 100, 114
BciVI GTATCC 1 cut(s) 260
BfaI CTAG 2 cut(s) 74, 404
BfmI CTRYAG 1 cut(s) 234
BfuI GTATCC 1 cut(s) 260
BisI GCNGC 2 cut(s) 223, 248
BlsI GCNGC 2 cut(s) 224, 249
Bme1390I CCNGG 2 cut(s) 100, 114
BmgT120I GGNCC 1 cut(s) 77
BmrFI CCNGG 2 cut(s) 100, 114
Bsa29I ATCGAT 1 cut(s) 130
BsaJI CCNNGG 2 cut(s) 99, 348
Bse1I ACTGG 2 cut(s) 187, 427
Bse3DI GCAATG 1 cut(s) 257
BseBI CCWGG 2 cut(s) 100, 114
BseCI ATCGAT 1 cut(s) 130
BseDI CCNNGG 2 cut(s) 99, 348
BseGI GGATG 1 cut(s) 316
BseMI GCAATG 1 cut(s) 257
BseNI ACTGG 2 cut(s) 187, 427
BseSI GKGCMC 2 cut(s) 106, 121
BseXI GCAGC 1 cut(s) 234
BshFI GGCC 2 cut(s) 79, 353
BshVI ATCGAT 1 cut(s) 130
BsiHKAI GWGCWC 1 cut(s) 121
BslFI GGGAC 1 cut(s) 189
BsmFI GGGAC 1 cut(s) 189
BsnI GGCC 2 cut(s) 79, 353
Bsp1286I GDGCHC 2 cut(s) 106, 121
BspACI CCGC 2 cut(s) 222, 225
BspANI GGCC 2 cut(s) 79, 353
BspDI ATCGAT 1 cut(s) 130
BsrDI GCAATG 1 cut(s) 257
BsrI ACTGG 2 cut(s) 187, 427
BssECI CCNNGG 2 cut(s) 99, 348
BssT1I CCWWGG 1 cut(s) 348
Bst2UI CCWGG 2 cut(s) 100, 114
BstC8I GCNNGC 1 cut(s) 330
BstF5I GGATG 1 cut(s) 316
BstHHI GCGC 1 cut(s) 215
BstMWI GCNNNNNNNGC 1 cut(s) 219
BstNI CCWGG 2 cut(s) 100, 114
BstNSI RCATGY 4 cut(s) 43, 219, 279, 332
BstSCI CCNGG 2 cut(s) 98, 112
BstSFI CTRYAG 1 cut(s) 234
BstSLI GKGCMC 2 cut(s) 106, 121
BstV1I GCAGC 1 cut(s) 234
Bsu15I ATCGAT 1 cut(s) 130
BsuI GTATCC 1 cut(s) 260
BsuRI GGCC 2 cut(s) 79, 353
BsuTUI ATCGAT 1 cut(s) 130
BtsCI GGATG 1 cut(s) 316
BtsIMutI CAGTG 1 cut(s) 420
Cac8I GCNNGC 1 cut(s) 330
CfoI GCGC 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 77
ClaI ATCGAT 1 cut(s) 130
Csp6I GTAC 3 cut(s) 166, 180, 231
CspCI CAANNNNNGTGG 2 cut(s) 375, 410
CviAII CATG 4 cut(s) 40, 216, 276, 329
CviJI RGCY 7 cut(s) 79, 87, 98, 340, 353, 401, 407
CviKI_1 RGCY 7 cut(s) 79, 87, 98, 340, 353, 401, 407
CviQI GTAC 3 cut(s) 166, 180, 231
EciI GGCGGA 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 348
Eco147I AGGCCT 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 77
EcoRII CCWGG 2 cut(s) 98, 112
EcoT14I CCWWGG 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 4 cut(s) 43, 219, 279, 332
FaiI YATR 7 cut(s) 26, 41, 217, 236, 277, 330, 344
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 1 cut(s) 189
FatI CATG 4 cut(s) 39, 215, 275, 328
Fnu4HI GCNGC 2 cut(s) 223, 248
FokI GGATG 1 cut(s) 303
Fsp4HI GCNGC 2 cut(s) 223, 248
FspBI CTAG 2 cut(s) 74, 404
GlaI GCGC 1 cut(s) 214
GluI GCNGC 2 cut(s) 223, 248
HaeIII GGCC 2 cut(s) 79, 353
HhaI GCGC 1 cut(s) 215
Hin1II CATG 4 cut(s) 43, 219, 279, 332
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HphI GGTGA 1 cut(s) 406
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 2 cut(s) 202, 325
Hpy8I GTNNAC 1 cut(s) 119
HpyAV CCTTC 2 cut(s) 253, 391
HpyCH4IV ACGT 2 cut(s) 178, 204
HpyCH4V TGCA 3 cut(s) 119, 250, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 219
HpySE526I ACGT 2 cut(s) 178, 204
Hsp92II CATG 4 cut(s) 43, 219, 279, 332
HspAI GCGC 1 cut(s) 213
Lsp1109I GCAGC 1 cut(s) 234
MaeI CTAG 2 cut(s) 74, 404
MaeII ACGT 2 cut(s) 178, 204
MaeIII GTNAC 1 cut(s) 13
MhlI GDGCHC 2 cut(s) 106, 121
MluCI AATT 4 cut(s) 20, 57, 378, 391
MnlI CCTC 4 cut(s) 221, 233, 256, 428
MseI TTAA 3 cut(s) 126, 159, 390
MspR9I CCNGG 2 cut(s) 100, 114
MvaI CCWGG 2 cut(s) 100, 114
MwoI GCNNNNNNNGC 1 cut(s) 219
NlaIII CATG 4 cut(s) 43, 219, 279, 332
NmuCI GTSAC 1 cut(s) 13
NspI RCATGY 4 cut(s) 43, 219, 279, 332
PaeI GCATGC 1 cut(s) 332
PceI AGGCCT 1 cut(s) 353
PciI ACATGT 1 cut(s) 275
PcsI WCGNNNNNNNCGW 1 cut(s) 206
PkrI GCNGC 2 cut(s) 224, 249
PscI ACATGT 1 cut(s) 275
PshBI ATTAAT 1 cut(s) 126
Psp6I CCWGG 2 cut(s) 98, 112
PspGI CCWGG 2 cut(s) 98, 112
PspPI GGNCC 1 cut(s) 77
RsaI GTAC 3 cut(s) 167, 181, 232
RsaNI GTAC 3 cut(s) 166, 180, 231
SaqAI TTAA 3 cut(s) 126, 159, 390
SatI GCNGC 2 cut(s) 223, 248
Sau96I GGNCC 1 cut(s) 77
ScrFI CCNGG 2 cut(s) 100, 114
SduI GDGCHC 2 cut(s) 106, 121
SetI ASST 4 cut(s) 118, 181, 207, 232
SfcI CTRYAG 1 cut(s) 234
SphI GCATGC 1 cut(s) 332
Sse9I AATT 4 cut(s) 20, 57, 378, 391
SseBI AGGCCT 1 cut(s) 353
SsiI CCGC 2 cut(s) 222, 225
SspMI CTAG 2 cut(s) 74, 404
StuI AGGCCT 1 cut(s) 353
StyD4I CCNGG 2 cut(s) 98, 112
StyI CCWWGG 1 cut(s) 348
TaiI ACGT 2 cut(s) 181, 207
TaqI TCGA 3 cut(s) 130, 209, 376
TasI AATT 4 cut(s) 20, 57, 378, 391
TatI WGTACW 1 cut(s) 165
TauI GCSGC 1 cut(s) 225
Tru1I TTAA 3 cut(s) 126, 159, 390
Tru9I TTAA 3 cut(s) 126, 159, 390
TscAI CASTG 1 cut(s) 427
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 1 cut(s) 247
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 2 cut(s) 13, 161
TspRI CASTG 1 cut(s) 427
VneI GTGCAC 1 cut(s) 117
VspI ATTAAT 1 cut(s) 126
XapI RAATTY 1 cut(s) 20
XceI RCATGY 4 cut(s) 43, 219, 279, 332
XspI CTAG 2 cut(s) 74, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.