RchiOBHm_Chr4g0433761

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0016027
Physical Location & Seq
Reverse (-)
57759638 .. 57760263
626 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 384 bp
ATGTTCCTTCTTGTATGTTCTTCATCTGTTTCATCATCAGATTCATCTCTGATATCCAATGCTGTTTGTGGGATCTTCACTTTCGGAGACTCCATCTTCGACGCTGGAAACAATCACTTCAACAAGAACTGCACTGTTCAAGCAGATTTCCCACCGTATGGCTCAAGCTTCTTCCACTACCCAACTGGCAGGTTCACTAATGGCAGAACTGTTGCTGATTTCATCTCACAATTCATCGGCATTCCTCTCCAAAAACCATATTATGAGGTACAAATTGAAGCTATGACTGGAAGCCGGAAAGGTTATCCTTCCAATGGCCTTAACTTTGCTAGTGCCGGCAGTGGTGTTTTGCAAGGAACAAATAAAAATTTGGTAACAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016298 GO:0016787 GO:0016788
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

127

Amino Acids

13.65

Weight (kDa)

6.69

Isoelectric Point (pI)

33.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 25 - 118 3.8e-10 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71120
prunus_persica Prupe.1G321500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0433751 RchiOBHm_Chr4g0433761
rosa_laevigata RLG00000006733
rosa_multiflora Rmu_sc0006151.1_g000003
rosa_roxburghii Rroxscaffold_5G00375190
rosa_rugosa Rorug04G0271300
rosa_samantha Rh4AG325800 Rh4AG325900 Rh4BG333600 Rh4CG348800 Rh4DG330200 Rh4DG330300
rosa_wichuraiana Rw4G028220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 180
AccB7I CCANNNNNTGG 1 cut(s) 158
AclWI GGATC 1 cut(s) 80
AcsI RAATTY 1 cut(s) 367
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 2 cut(s) 158, 314
AgsI TTSAA 3 cut(s) 121, 140, 278
AluBI AGCT 2 cut(s) 168, 281
AluI AGCT 2 cut(s) 168, 281
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 1 cut(s) 80
AoxI GGCC 1 cut(s) 316
ApoI RAATTY 1 cut(s) 367
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
BccI CCATC 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 1 cut(s) 330
BfuAI ACCTGC 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 314
Bse118I RCCGGY 1 cut(s) 335
Bse1I ACTGG 2 cut(s) 190, 292
BseLI CCNNNNNNNGG 2 cut(s) 158, 314
BseNI ACTGG 2 cut(s) 190, 292
BsgI GTGCAG 1 cut(s) 115
BshFI GGCC 1 cut(s) 318
BsiSI CCGG 2 cut(s) 295, 336
BslI CCNNNNNNNGG 2 cut(s) 158, 314
BsmAI GTCTC 1 cut(s) 81
BsmI GAATGC 1 cut(s) 240
BsnI GGCC 1 cut(s) 318
Bsp143I GATC 1 cut(s) 72
BspANI GGCC 1 cut(s) 318
BspMI ACCTGC 1 cut(s) 180
BspPI GGATC 1 cut(s) 80
BsrFI RCCGGY 1 cut(s) 335
BsrI ACTGG 2 cut(s) 190, 292
BssAI RCCGGY 1 cut(s) 335
BssMI GATC 1 cut(s) 72
Bst4CI ACNGT 3 cut(s) 136, 156, 211
BstC8I GCNNGC 1 cut(s) 337
BstKTI GATC 1 cut(s) 75
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 72
BstYI RGATCY 1 cut(s) 72
BsuRI GGCC 1 cut(s) 318
BtsI GCAGTG 1 cut(s) 346
BtsIMutI CAGTG 2 cut(s) 132, 346
BveI ACCTGC 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 337
Cfr10I RCCGGY 1 cut(s) 335
CseI GACGC 1 cut(s) 110
Csp6I GTAC 1 cut(s) 269
CviJI RGCY 5 cut(s) 162, 168, 281, 294, 318
CviKI_1 RGCY 5 cut(s) 162, 168, 281, 294, 318
CviQI GTAC 1 cut(s) 269
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
Eco32I GATATC 1 cut(s) 54
EcoRV GATATC 1 cut(s) 54
FaiI YATR 5 cut(s) 16, 159, 259, 264, 284
FspBI CTAG 1 cut(s) 330
HaeIII GGCC 1 cut(s) 318
HapII CCGG 2 cut(s) 295, 336
HgaI GACGC 1 cut(s) 110
HindIII AAGCTT 1 cut(s) 166
HinfI GANTC 2 cut(s) 41, 89
HpaII CCGG 2 cut(s) 295, 336
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 3 cut(s) 40, 51, 86
Hpy8I GTNNAC 1 cut(s) 195
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 2 cut(s) 17, 318
HpyCH4III ACNGT 3 cut(s) 136, 156, 211
HpyCH4V TGCA 2 cut(s) 132, 352
KroI GCCGGC 1 cut(s) 335
KroNI GCCGGC 1 cut(s) 337
Kzo9I GATC 1 cut(s) 72
LpnPI CCDG 6 cut(s) 90, 171, 175, 273, 308, 349
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 373
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
MboII GAAGA 4 cut(s) 12, 67, 88, 163
MflI RGATCY 1 cut(s) 72
MluCI AATT 4 cut(s) 230, 273, 367, 379
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 2 cut(s) 255, 259
MroNI GCCGGC 1 cut(s) 335
MseI TTAA 2 cut(s) 321, 382
MspI CCGG 2 cut(s) 295, 336
Mva1269I GAATGC 1 cut(s) 240
NaeI GCCGGC 1 cut(s) 337
NdeII GATC 1 cut(s) 72
NgoMIV GCCGGC 1 cut(s) 335
PctI GAATGC 1 cut(s) 240
PdiI GCCGGC 1 cut(s) 337
PfeI GAWTC 1 cut(s) 41
PflMI CCANNNNNTGG 1 cut(s) 158
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
PsuI RGATCY 1 cut(s) 72
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
SaqAI TTAA 2 cut(s) 321, 382
Sau3AI GATC 1 cut(s) 72
SchI GAGTC 1 cut(s) 83
SetI ASST 5 cut(s) 170, 194, 270, 283, 304
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
Sse9I AATT 4 cut(s) 230, 273, 367, 379
SspMI CTAG 1 cut(s) 330
TaaI ACNGT 3 cut(s) 136, 156, 211
TaqI TCGA 1 cut(s) 99
TasI AATT 4 cut(s) 230, 273, 367, 379
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 2 cut(s) 321, 382
Tru9I TTAA 2 cut(s) 321, 382
TscAI CASTG 2 cut(s) 139, 346
TspDTI ATGAA 5 cut(s) 12, 21, 33, 211, 223
TspRI CASTG 2 cut(s) 139, 346
Van91I CCANNNNNTGG 1 cut(s) 158
XapI RAATTY 1 cut(s) 367
XcmI CCANNNNNNNNNTGG 1 cut(s) 182
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.