RchiOBHm_Chr3g0459911

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0013257
Physical Location & Seq
Forward (+)
8193515 .. 8195207
1693 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1062 bp
ATGGCCGCCACCGCCCAGCTCCGCTGCTCTACTCTGGCCAAAGCCCACTCCAGTCTCTCCGACAACCGCCGCAGCATCCCCAGTAACTCCAGTTCTTCAATTTCTTTCCCCTATTCCAAAACCCTAAATCGCGGCCTTTCTTTCGGACCCAGACCCATTTTGGACGGAAGGCCCGATCTTTCGTTTTCCGGCGGTAATGGCGGCAACGGTGCCGGCGCCGGCGGAGGAGGTAGCGGTGATTGGAGCCGCGGAGATGAGAATGAAGAGTCGAAACCCTCGACGTCGCTGTTTCAGGGTTTTGGGCTTCTGGGTATGTTTCTGAATGGATGGAGATCTAGAGTCGCCGCCGATCCTCAGTTTCCGTTCAAGGTTTTGATGGAGGAGGTCGTCGGAGTCAGCTCCTGCGTCCTCGGCGACATGGCTTCCCGGCCCAATTTCGGCCTCAACGAGCTCGATTTCGTCTTCTCGACCCTCGTCGTCGGCTGCATTCTGAACTTCACTCTCATGTATCTACTGGCGCCGAGCTTGTCCGCCTCCGCCGCAACTCTCCCTTCGATCTTCGCCAGCTGTCCGGCCAGCCACATGTTCGAGCCGGGCTCTTTCGGCCTGCTGAATCGCCTCGGGACGTTGGTCTACAAAGGGGCAGTCTTTGCCGGAGTTGGATTCGCCGCAGGGCTTGCCGGTACTGCGCTTTCGAATGGGCTGATCAAGCTGAGGAAGAAGATGGACCCGGAGTTTGAGACCCCGAATAAGCCTCCACCGACATTGTTGAATGCGGTGACTTGGGCAATTCACATGGGTGTGAGCAGCAATTTGAGGTACCAGACATTGAACGGGGTGGAGTATGCGTTGGGGAAGGGGCTGCCGCCGCTGGCGTTTAAGTCTTCGGTGGTGGTTCTGAGGTGCTTGAACAATGTGCTTGGTGGGATGACATTTGTGCTTCTGGCGAGGTTGACAGGATCGCAGAGTGCTGCTGAGAAGCCGGAGATTGGATCGGCTGCAGAGAAGGAAAAACTGGTGGAGGAGAATGCGGATTTGAGCAATCAGTCGACTTACAAGTGA

Protein Analysis

353

Amino Acids

37.09

Weight (kDa)

8.77

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 113 - 280 5.3e-63 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08630 AT3G08640
fragaria_vesca FvH4_6g09440
malus_domestica MD04G1177700.v1.1 MD12G1193000.v1.1
prunus_persica Prupe.6G297600_v2.0.a1
pyrus_communis pycom04g15670
rosa_chinensis RchiOBHm_Chr3g0459911
rosa_laevigata RLG00000025052
rosa_multiflora Rmu_co8396657.1_g000001 Rmu_sc0000240.1_g000046 Rmu_sc0016534.1_g000001
rosa_roxburghii Rroxscaffold_6G00419920
rosa_rugosa Rorug03G0038700.1
rosa_samantha Rh3AG097500 Rh3BG100200 Rh3CG102000 Rh3DG101700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 284
Acc65I GGTACC 1 cut(s) 819
AccB1I GGYRCC 4 cut(s) 209, 215, 517, 819
AccI GTMKAC 2 cut(s) 633, 1049
AccII CGCG 2 cut(s) 132, 249
AclWI GGATC 3 cut(s) 344, 967, 1000
AcoI YGGCCR 3 cut(s) 3, 36, 573
AcyI GRCGYC 3 cut(s) 216, 281, 518
AfaI GTAC 2 cut(s) 685, 821
AfiI CCNNNNNNNGG 2 cut(s) 437, 989
AflIII ACRYGT 1 cut(s) 582
AgsI TTSAA 5 cut(s) 99, 367, 772, 832, 910
AleI CACNNNNGTG 1 cut(s) 798
AluBI AGCT 6 cut(s) 19, 399, 451, 525, 567, 712
AluI AGCT 6 cut(s) 19, 399, 451, 525, 567, 712
Alw21I GWGCWC 1 cut(s) 453
Alw26I GTCTC 2 cut(s) 59, 734
AlwI GGATC 3 cut(s) 344, 967, 1000
AlwNI CAGNNNCTG 1 cut(s) 402
Ama87I CYCGRG 1 cut(s) 620
AoxI GGCC 8 cut(s) 3, 36, 133, 170, 428, 439, 573, 604
ApeKI GCWGC 7 cut(s) 24, 72, 483, 807, 862, 971, 998
ArsI GACNNNNNNTTYG 4 cut(s) 630, 662, 719, 751
Asp718I GGTACC 1 cut(s) 819
AspLEI GCGC 3 cut(s) 218, 520, 691
AspS9I GGNCC 4 cut(s) 146, 171, 429, 727
AsuC2I CCSGG 3 cut(s) 427, 594, 731
AsuHPI GGTGA 2 cut(s) 248, 790
AsuII TTCGAA 1 cut(s) 695
AvaI CYCGRG 1 cut(s) 620
AvaII GGWCC 2 cut(s) 146, 727
BalI TGGCCA 1 cut(s) 38
BanI GGYRCC 4 cut(s) 209, 215, 517, 819
BanII GRGCYC 2 cut(s) 453, 599
BbsI GAAGAC 2 cut(s) 454, 876
Bbv12I GWGCWC 1 cut(s) 453
BbvCI CCTCAGC 1 cut(s) 713
BbvI GCAGC 7 cut(s) 11, 84, 470, 819, 849, 958, 985
BccI CCATC 3 cut(s) 321, 370, 718
BclI TGATCA 1 cut(s) 705
BcnI CCSGG 3 cut(s) 427, 594, 731
BcoDI GTCTC 2 cut(s) 59, 734
BfaI CTAG 1 cut(s) 336
BfmI CTRYAG 1 cut(s) 999
BfoI RGCGCY 2 cut(s) 219, 521
BglII AGATCT 1 cut(s) 332
Bme1390I CCNGG 3 cut(s) 427, 594, 731
Bme18I GGWCC 2 cut(s) 146, 727
BmeT110I CYCGRG 1 cut(s) 620
BmgT120I GGNCC 4 cut(s) 146, 171, 429, 727
BmiI GGNNCC 7 cut(s) 148, 211, 217, 245, 519, 729, 821
BmrFI CCNGG 3 cut(s) 427, 594, 731
BmrI ACTGGG 1 cut(s) 75
BmsI GCATC 1 cut(s) 84
BmuI ACTGGG 1 cut(s) 75
BoxI GACNNNNGTC 2 cut(s) 473, 629
BpiI GAAGAC 2 cut(s) 454, 876
BplI GAGNNNNNCTC 2 cut(s) 581, 613
BpmI CTGGAG 2 cut(s) 34, 73
Bpu10I CCTNAGC 1 cut(s) 713
Bpu14I TTCGAA 1 cut(s) 695
BpuMI CCSGG 3 cut(s) 427, 594, 731
BsaBI GATNNNNATC 1 cut(s) 331
BsaHI GRCGYC 3 cut(s) 216, 281, 518
BsaI GGTCTC 1 cut(s) 734
BsaJI CCNNGG 3 cut(s) 247, 409, 619
BsaXI ACNNNNNCTCC 2 cut(s) 833, 863
Bsc4I CCNNNNNNNGG 2 cut(s) 437, 989
Bse118I RCCGGY 3 cut(s) 212, 218, 680
Bse1I ACTGG 5 cut(s) 51, 81, 90, 519, 1020
Bse8I GATNNNNATC 1 cut(s) 331
BseDI CCNNGG 3 cut(s) 247, 409, 619
BseGI GGATG 3 cut(s) 75, 332, 933
BseJI GATNNNNATC 1 cut(s) 331
BseLI CCNNNNNNNGG 2 cut(s) 437, 989
BseMII CTCAG 4 cut(s) 368, 704, 890, 966
BseNI ACTGG 5 cut(s) 51, 81, 90, 519, 1020
BseRI GAGGAG 3 cut(s) 240, 395, 1037
BseXI GCAGC 7 cut(s) 11, 84, 470, 819, 849, 958, 985
BseYI CCCAGC 1 cut(s) 15
Bsh1236I CGCG 2 cut(s) 132, 249
BshFI GGCC 8 cut(s) 5, 38, 135, 172, 430, 441, 575, 606
BshNI GGYRCC 4 cut(s) 209, 215, 517, 819
BsiHKAI GWGCWC 1 cut(s) 453
BsiHKCI CYCGRG 1 cut(s) 620
BslFI GGGAC 1 cut(s) 637
BslI CCNNNNNNNGG 2 cut(s) 437, 989
BsmAI GTCTC 2 cut(s) 59, 734
BsmFI GGGAC 1 cut(s) 637
BsmI GAATGC 3 cut(s) 486, 778, 1033
BsnI GGCC 8 cut(s) 5, 38, 135, 172, 430, 441, 575, 606
Bso31I GGTCTC 1 cut(s) 734
BsoBI CYCGRG 1 cut(s) 620
Bsp119I TTCGAA 1 cut(s) 695
Bsp1286I GDGCHC 2 cut(s) 453, 599
Bsp143I GATC 7 cut(s) 175, 332, 349, 555, 705, 959, 992
BspANI GGCC 8 cut(s) 5, 38, 135, 172, 430, 441, 575, 606
BspCNI CTCAG 4 cut(s) 367, 705, 891, 967
BspFNI CGCG 2 cut(s) 132, 249
BspLI GGNNCC 7 cut(s) 148, 211, 217, 245, 519, 729, 821
BspMAI CTGCAG 1 cut(s) 1003
BspPI GGATC 3 cut(s) 344, 967, 1000
BspT104I TTCGAA 1 cut(s) 695
BspT107I GGYRCC 4 cut(s) 209, 215, 517, 819
BspTNI GGTCTC 1 cut(s) 734
BsrFI RCCGGY 3 cut(s) 212, 218, 680
BsrI ACTGG 5 cut(s) 51, 81, 90, 519, 1020
BssAI RCCGGY 3 cut(s) 212, 218, 680
BssECI CCNNGG 3 cut(s) 247, 409, 619
BssMI GATC 7 cut(s) 175, 332, 349, 555, 705, 959, 992
BssNI GRCGYC 3 cut(s) 216, 281, 518
Bst4CI ACNGT 1 cut(s) 209
Bst6I CTCTTC 1 cut(s) 258
BstACI GRCGYC 3 cut(s) 216, 281, 518
BstAPI GCANNNNNTGC 2 cut(s) 650, 677
BstBI TTCGAA 1 cut(s) 695
BstC8I GCNNGC 7 cut(s) 214, 220, 565, 577, 608, 678, 873
BstDEI CTNAG 4 cut(s) 354, 713, 899, 975
BstDSI CCRYGG 1 cut(s) 247
BstF5I GGATG 3 cut(s) 75, 332, 933
BstFNI CGCG 2 cut(s) 132, 249
BstH2I RGCGCY 2 cut(s) 219, 521
BstHHI GCGC 3 cut(s) 218, 520, 691
BstKTI GATC 7 cut(s) 178, 335, 352, 558, 708, 962, 995
BstMAI GTCTC 2 cut(s) 59, 734
BstMBI GATC 7 cut(s) 175, 332, 349, 555, 705, 959, 992
BstNSI RCATGY 1 cut(s) 586
BstPAI GACNNNNGTC 2 cut(s) 473, 629
BstSCI CCNGG 3 cut(s) 425, 592, 729
BstSFI CTRYAG 1 cut(s) 999
BstUI CGCG 2 cut(s) 132, 249
BstV1I GCAGC 7 cut(s) 11, 84, 470, 819, 849, 958, 985
BstV2I GAAGAC 2 cut(s) 454, 876
BstX2I RGATCY 1 cut(s) 332
BstYI RGATCY 1 cut(s) 332
BsuRI GGCC 8 cut(s) 5, 38, 135, 172, 430, 441, 575, 606
BtgI CCRYGG 1 cut(s) 247
BtsCI GGATG 3 cut(s) 75, 332, 933
Cac8I GCNNGC 7 cut(s) 214, 220, 565, 577, 608, 678, 873
CaiI CAGNNNCTG 1 cut(s) 402
CfoI GCGC 3 cut(s) 218, 520, 691
Cfr10I RCCGGY 3 cut(s) 212, 218, 680
Cfr13I GGNCC 4 cut(s) 146, 171, 429, 727
Cfr42I CCGCGG 1 cut(s) 250
CseI GACGC 1 cut(s) 394
Csp6I GTAC 2 cut(s) 684, 820
CspCI CAANNNNNGTGG 2 cut(s) 747, 782
CviAII CATG 4 cut(s) 418, 505, 583, 796
CviQI GTAC 2 cut(s) 684, 820
DdeI CTNAG 4 cut(s) 354, 713, 899, 975
DinI GGCGCC 2 cut(s) 217, 519
DpnI GATC 7 cut(s) 177, 334, 351, 557, 707, 961, 994
DpnII GATC 7 cut(s) 175, 332, 349, 555, 705, 959, 992
EaeI YGGCCR 3 cut(s) 3, 36, 573
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
EciI GGCGGA 3 cut(s) 237, 520, 526
Ecl136II GAGCTC 1 cut(s) 451
Eco24I GRGCYC 2 cut(s) 453, 599
Eco31I GGTCTC 1 cut(s) 734
Eco47I GGWCC 2 cut(s) 146, 727
Eco53kI GAGCTC 1 cut(s) 451
Eco88I CYCGRG 1 cut(s) 620
EcoICRI GAGCTC 1 cut(s) 451
EcoT38I GRGCYC 2 cut(s) 453, 599
EgeI GGCGCC 2 cut(s) 217, 519
EheI GGCGCC 2 cut(s) 217, 519
FaeI CATG 4 cut(s) 421, 508, 586, 799
FaiI YATR 6 cut(s) 314, 419, 506, 584, 797, 846
FaqI GGGAC 1 cut(s) 637
FatI CATG 4 cut(s) 417, 504, 582, 795
FbaI TGATCA 1 cut(s) 705
FblI GTMKAC 2 cut(s) 633, 1049
FokI GGATG 3 cut(s) 62, 339, 940
FriOI GRGCYC 2 cut(s) 453, 599
FspBI CTAG 1 cut(s) 336
GlaI GCGC 3 cut(s) 217, 519, 690
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 2 cut(s) 34, 73
HaeII RGCGCY 2 cut(s) 219, 521
HaeIII GGCC 8 cut(s) 5, 38, 135, 172, 430, 441, 575, 606
HgaI GACGC 1 cut(s) 394
HhaI GCGC 3 cut(s) 218, 520, 691
Hin1I GRCGYC 3 cut(s) 216, 281, 518
Hin1II CATG 4 cut(s) 421, 508, 586, 799
Hin6I GCGC 3 cut(s) 216, 518, 689
HinP1I GCGC 3 cut(s) 216, 518, 689
HincII GTYRAC 2 cut(s) 954, 1050
HindII GTYRAC 2 cut(s) 954, 1050
HinfI GANTC 5 cut(s) 266, 339, 393, 613, 663
HphI GGTGA 2 cut(s) 248, 790
Hpy166II GTNNAC 3 cut(s) 634, 954, 1050
Hpy188I TCNGA 6 cut(s) 61, 146, 321, 392, 492, 900
Hpy188III TCNNGA 3 cut(s) 336, 466, 622
Hpy8I GTNNAC 3 cut(s) 634, 954, 1050
Hpy99I CGWCG 5 cut(s) 283, 286, 392, 479, 482
HpyAV CCTTC 4 cut(s) 162, 561, 850, 1000
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 2 cut(s) 281, 626
HpyCH4V TGCA 2 cut(s) 486, 1001
HpyF3I CTNAG 4 cut(s) 354, 713, 899, 975
HpySE526I ACGT 2 cut(s) 281, 626
Hsp92I GRCGYC 3 cut(s) 216, 281, 518
Hsp92II CATG 4 cut(s) 421, 508, 586, 799
HspAI GCGC 3 cut(s) 216, 518, 689
KasI GGCGCC 2 cut(s) 215, 517
KpnI GGTACC 1 cut(s) 823
KroI GCCGGC 2 cut(s) 212, 218
KroNI GCCGGC 2 cut(s) 214, 220
Ksp22I TGATCA 1 cut(s) 705
KspI CCGCGG 1 cut(s) 250
Kzo9I GATC 7 cut(s) 175, 332, 349, 555, 705, 959, 992
LmnI GCTCC 3 cut(s) 24, 243, 404
Lsp1109I GCAGC 7 cut(s) 11, 84, 470, 819, 849, 958, 985
LweI GCATC 1 cut(s) 84
MaeI CTAG 1 cut(s) 336
MaeII ACGT 2 cut(s) 281, 626
MaeIII GTNAC 2 cut(s) 83, 778
MalI GATC 7 cut(s) 177, 334, 351, 557, 707, 961, 994
MboI GATC 7 cut(s) 175, 332, 349, 555, 705, 959, 992
MboII GAAGA 7 cut(s) 87, 275, 454, 550, 730, 733, 876
MflI RGATCY 1 cut(s) 332
MhlI GDGCHC 2 cut(s) 453, 599
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 4 cut(s) 99, 433, 789, 811
MluNI TGGCCA 1 cut(s) 38
Mly113I GGCGCC 2 cut(s) 216, 518
MlyI GAGTC 3 cut(s) 275, 348, 402
MmeI TCCRAC 3 cut(s) 84, 370, 640
Mox20I TGGCCA 1 cut(s) 38
MreI CGCCGGCG 1 cut(s) 218
MroNI GCCGGC 2 cut(s) 212, 218
MscI TGGCCA 1 cut(s) 38
MseI TTAA 1 cut(s) 879
MslI CAYNNNNRTG 3 cut(s) 503, 798, 800
Msp20I TGGCCA 1 cut(s) 38
MspA1I CMGCKG 4 cut(s) 24, 249, 567, 871
MspR9I CCNGG 3 cut(s) 427, 594, 731
Mva1269I GAATGC 3 cut(s) 486, 778, 1033
MvnI CGCG 2 cut(s) 132, 249
NaeI GCCGGC 2 cut(s) 214, 220
NarI GGCGCC 2 cut(s) 216, 518
NciI CCSGG 3 cut(s) 427, 594, 731
NdeII GATC 7 cut(s) 175, 332, 349, 555, 705, 959, 992
NgoMIV GCCGGC 2 cut(s) 212, 218
NlaIII CATG 4 cut(s) 421, 508, 586, 799
NlaIV GGNNCC 7 cut(s) 148, 211, 217, 245, 519, 729, 821
NmeAIII GCCGAG 2 cut(s) 390, 546
NmuCI GTSAC 1 cut(s) 778
NspI RCATGY 1 cut(s) 586
NspV TTCGAA 1 cut(s) 695
OliI CACNNNNGTG 1 cut(s) 798
PciI ACATGT 1 cut(s) 582
PcsI WCGNNNNNNNCGW 3 cut(s) 171, 275, 444
PctI GAATGC 3 cut(s) 486, 778, 1033
PdiI GCCGGC 2 cut(s) 214, 220
PfeI GAWTC 2 cut(s) 613, 663
PleI GAGTC 3 cut(s) 274, 347, 401
PluTI GGCGCC 2 cut(s) 219, 521
PpsI GAGTC 3 cut(s) 274, 347, 401
PscI ACATGT 1 cut(s) 582
PshAI GACNNNNGTC 2 cut(s) 473, 629
Psp124BI GAGCTC 1 cut(s) 453
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 7 cut(s) 148, 211, 217, 245, 519, 729, 821
PspPI GGNCC 4 cut(s) 146, 171, 429, 727
PsrI GAACNNNNNNTAC 2 cut(s) 76, 108
PstI CTGCAG 1 cut(s) 1003
PstNI CAGNNNCTG 1 cut(s) 402
PsuI RGATCY 1 cut(s) 332
PvuII CAGCTG 1 cut(s) 567
RsaI GTAC 2 cut(s) 685, 821
RsaNI GTAC 2 cut(s) 684, 820
RseI CAYNNNNRTG 3 cut(s) 503, 798, 800
SacI GAGCTC 1 cut(s) 453
SacII CCGCGG 1 cut(s) 250
SalI GTCGAC 1 cut(s) 1048
SaqAI TTAA 1 cut(s) 879
Sau3AI GATC 7 cut(s) 175, 332, 349, 555, 705, 959, 992
Sau96I GGNCC 4 cut(s) 146, 171, 429, 727
SchI GAGTC 3 cut(s) 275, 348, 402
ScrFI CCNGG 3 cut(s) 427, 594, 731
SduI GDGCHC 2 cut(s) 453, 599
SfaNI GCATC 1 cut(s) 84
SfcI CTRYAG 1 cut(s) 999
SfoI GGCGCC 2 cut(s) 217, 519
Sfr303I CCGCGG 1 cut(s) 250
SfuI TTCGAA 1 cut(s) 695
SgrAI CRCCGGYG 1 cut(s) 218
SgrBI CCGCGG 1 cut(s) 250
SinI GGWCC 2 cut(s) 146, 727
SmiMI CAYNNNNRTG 3 cut(s) 503, 798, 800
Sse9I AATT 4 cut(s) 99, 433, 789, 811
SspDI GGCGCC 2 cut(s) 215, 517
SspMI CTAG 1 cut(s) 336
SstI GAGCTC 1 cut(s) 453
StyD4I CCNGG 3 cut(s) 425, 592, 729
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 2 cut(s) 284, 629
TaqI TCGA 8 cut(s) 269, 278, 453, 467, 554, 588, 695, 1049
TasI AATT 4 cut(s) 99, 433, 789, 811
TfiI GAWTC 2 cut(s) 613, 663
Tru1I TTAA 1 cut(s) 879
Tru9I TTAA 1 cut(s) 879
TseFI GTSAC 1 cut(s) 778
TseI GCWGC 7 cut(s) 24, 72, 483, 807, 862, 971, 998
Tsp45I GTSAC 1 cut(s) 778
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 2 cut(s) 180, 351
VpaK11BI GGWCC 2 cut(s) 146, 727
XbaI TCTAGA 1 cut(s) 335
XceI RCATGY 1 cut(s) 586
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XmiI GTMKAC 2 cut(s) 633, 1049
XspI CTAG 1 cut(s) 336
ZraI GACGTC 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.