RchiOBHm_Chr3g0461001

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0005911
Physical Location & Seq
Reverse (-)
9074169 .. 9076639
2471 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 948 bp
ATGGACAGTCCCACAAATTTTATAGTCTCCTTGTCCTTCCTTTTGCTTCTAGTCGGAATAGCTTCTGCTCAGTTGTCCTCTACTTTCTATTCAAGCTCATGTCCCAACGCCCTCTCCACCATCAAATCAGCCGTGGACTCGGCCGTTTCAAGCGAGGCTCGCATGGGAGCCTCCTTGCTCCGCCTCCATTTTCATGATTGCTTTGGATGCGATGCTTCGGTACTGTTGGATGACACGGCCAATTTCACTGGCGAGAAGACTGCCGGCCCTAATGCTAATTCTTTGAGGGGATTCGACGTAGTCGACACCATTAAAACTCAACTAGAGAGTCTCTGCCCCGGTGTCTTCTCTTGTGCCGACATATTGGCCGTCGCTGCTAGAGACTCCGTTGTCGCTTTGAATGGACCTAGCTGGACAGTGCAATTGGGGAGAAGAGACTCCACCACCGCGAGTTTAAGTGCTGCGAATACCAACATTCCAGCTCCTACCTTGAATCTTAGTGCCCTAATTACTTCTTTCTCAAACAAAGGCTTTAATGCCAAGGAACTAGTGGCTCTCTCAGGGTCTCATACAATTGGGCAAGCACGGTGCACAACTTTTAGAGCAAGGCTTTACAATGAAGCCAACATAAACTCCTCATTCGCAACATCGCTAAAAGCAAATTGTCCGAGCAGTGGGGGTGATACCAACCTTTCCCCGCTTGATGTCACAACTCCAAACACGTTTGACAACGCTTACTTCAAGAACTTGGTGAGCCAAAAGGGTCTGTTGCACTCCGATCAACAACTCTTTAGCGGCGGTTCCACTAACGCTCAGGTGAATGCTTATAGTAGCAACCCAGGAAGTTTCAGCACGGACTTTGCCAATGCGATGGTGAAGATGGGAAACCTTAGCCCTCTCACGGGCACCAACGGTCAGATTAGGACCGATTGTAAAAAGGTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

315

Amino Acids

32.98

Weight (kDa)

6.4

Isoelectric Point (pI)

28.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 42 - 279 9e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 389
AccB1I GGYRCC 1 cut(s) 905
AccI GTMKAC 1 cut(s) 303
AccII CGCG 1 cut(s) 449
AciI CCGC 5 cut(s) 181, 447, 698, 795, 798
AcoI YGGCCR 3 cut(s) 141, 237, 366
AcsI RAATTY 1 cut(s) 16
AfaI GTAC 1 cut(s) 222
AfiI CCNNNNNNNGG 3 cut(s) 674, 901, 902
AflIII ACRYGT 1 cut(s) 720
AgsI TTSAA 5 cut(s) 93, 150, 400, 493, 742
AhlI ACTAGT 1 cut(s) 547
AjnI CCWGG 1 cut(s) 838
AluBI AGCT 4 cut(s) 62, 96, 411, 482
AluI AGCT 4 cut(s) 62, 96, 411, 482
Alw21I GWGCWC 1 cut(s) 593
Alw26I GTCTC 5 cut(s) 31, 335, 375, 429, 570
Alw44I GTGCAC 1 cut(s) 589
AoxI GGCC 4 cut(s) 141, 237, 265, 366
ApaLI GTGCAC 1 cut(s) 589
ApeKI GCWGC 2 cut(s) 374, 461
ApoI RAATTY 1 cut(s) 16
Asp700I GAANNNNTTC 1 cut(s) 61
AspS9I GGNCC 3 cut(s) 266, 404, 924
AsuC2I CCSGG 1 cut(s) 339
AsuHPI GGTGA 4 cut(s) 692, 763, 829, 886
AvaII GGWCC 2 cut(s) 404, 924
BaeGI GKGCMC 3 cut(s) 505, 593, 908
BanI GGYRCC 1 cut(s) 905
BbsI GAAGAC 2 cut(s) 263, 337
Bbv12I GWGCWC 1 cut(s) 593
BbvI GCAGC 2 cut(s) 361, 448
BccI CCATC 3 cut(s) 128, 865, 874
BceAI ACGGC 4 cut(s) 116, 128, 252, 353
BcgI CGANNNNNNTGC 2 cut(s) 242, 276
BciT130I CCWGG 1 cut(s) 840
BcnI CCSGG 1 cut(s) 339
BcoDI GTCTC 5 cut(s) 31, 335, 375, 429, 570
BcuI ACTAGT 1 cut(s) 547
BfaI CTAG 5 cut(s) 50, 323, 378, 408, 548
BisI GCNGC 3 cut(s) 375, 462, 796
BlsI GCNGC 3 cut(s) 376, 463, 797
Bme1390I CCNGG 2 cut(s) 339, 840
Bme18I GGWCC 2 cut(s) 404, 924
BmgT120I GGNCC 3 cut(s) 266, 404, 924
BmiI GGNNCC 3 cut(s) 169, 802, 907
BmrFI CCNGG 2 cut(s) 339, 840
BmsI GCATC 2 cut(s) 197, 202
BpiI GAAGAC 2 cut(s) 263, 337
Bpu10I CCTNAGC 2 cut(s) 813, 890
BpuMI CCSGG 1 cut(s) 339
BsaI GGTCTC 1 cut(s) 570
BsaJI CCNNGG 4 cut(s) 132, 337, 540, 838
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 617, 647
Bsc4I CCNNNNNNNGG 3 cut(s) 674, 901, 902
Bse118I RCCGGY 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 253
BseBI CCWGG 1 cut(s) 840
BseDI CCNNGG 4 cut(s) 132, 337, 540, 838
BseGI GGATG 2 cut(s) 212, 235
BseLI CCNNNNNNNGG 3 cut(s) 674, 901, 902
BseMII CTCAG 3 cut(s) 83, 573, 827
BseNI ACTGG 1 cut(s) 253
BseRI GAGGAG 1 cut(s) 625
BseSI GKGCMC 3 cut(s) 505, 593, 908
BseX3I CGGCCG 1 cut(s) 141
BseXI GCAGC 2 cut(s) 361, 448
Bsh1236I CGCG 1 cut(s) 449
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 4 cut(s) 143, 239, 267, 368
BshNI GGYRCC 1 cut(s) 905
BsiEI CGRYCG 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 593
BsiSI CCGG 2 cut(s) 264, 339
BslFI GGGAC 1 cut(s) 87
BslI CCNNNNNNNGG 3 cut(s) 674, 901, 902
BsmAI GTCTC 5 cut(s) 31, 335, 375, 429, 570
BsmFI GGGAC 1 cut(s) 87
BsmI GAATGC 1 cut(s) 826
BsnI GGCC 4 cut(s) 143, 239, 267, 368
Bso31I GGTCTC 1 cut(s) 570
Bsp1286I GDGCHC 3 cut(s) 505, 593, 908
Bsp143I GATC 1 cut(s) 778
BspACI CCGC 5 cut(s) 181, 447, 698, 795, 798
BspANI GGCC 4 cut(s) 143, 239, 267, 368
BspCNI CTCAG 3 cut(s) 82, 572, 826
BspFNI CGCG 1 cut(s) 449
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 3 cut(s) 169, 802, 907
BspT107I GGYRCC 1 cut(s) 905
BspTNI GGTCTC 1 cut(s) 570
BsrFI RCCGGY 1 cut(s) 263
BsrI ACTGG 1 cut(s) 253
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 4 cut(s) 132, 337, 540, 838
BssMI GATC 1 cut(s) 778
BssT1I CCWWGG 1 cut(s) 540
Bst2UI CCWGG 1 cut(s) 840
Bst4CI ACNGT 5 cut(s) 8, 225, 418, 588, 914
Bst6I CTCTTC 1 cut(s) 427
BstC8I GCNNGC 3 cut(s) 160, 265, 582
BstDEI CTNAG 5 cut(s) 69, 497, 559, 813, 890
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 2 cut(s) 212, 235
BstFNI CGCG 1 cut(s) 449
BstKTI GATC 1 cut(s) 781
BstMAI GTCTC 5 cut(s) 31, 335, 375, 429, 570
BstMBI GATC 1 cut(s) 778
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 3 cut(s) 159, 207, 374
BstNI CCWGG 1 cut(s) 840
BstSCI CCNGG 2 cut(s) 337, 838
BstSLI GKGCMC 3 cut(s) 505, 593, 908
BstUI CGCG 1 cut(s) 449
BstV1I GCAGC 2 cut(s) 361, 448
BstV2I GAAGAC 2 cut(s) 263, 337
BstXI CCANNNNNNTGG 1 cut(s) 871
BstZI CGGCCG 1 cut(s) 141
BsuRI GGCC 4 cut(s) 143, 239, 267, 368
BtgI CCRYGG 1 cut(s) 132
BtgZI GCGATG 3 cut(s) 225, 633, 884
BtsCI GGATG 2 cut(s) 212, 235
BtsI GCAGTG 1 cut(s) 679
BtsIMutI CAGTG 3 cut(s) 246, 423, 679
Cac8I GCNNGC 3 cut(s) 160, 265, 582
CciI TCATGA 1 cut(s) 193
Cfr10I RCCGGY 1 cut(s) 263
Cfr13I GGNCC 3 cut(s) 266, 404, 924
Csp6I GTAC 1 cut(s) 221
CviAII CATG 3 cut(s) 99, 163, 194
CviQI GTAC 1 cut(s) 221
DdeI CTNAG 5 cut(s) 69, 497, 559, 813, 890
DpnI GATC 1 cut(s) 780
DpnII GATC 1 cut(s) 778
DrdI GACNNNNNNGTC 1 cut(s) 389
DseDI GACNNNNNNGTC 1 cut(s) 389
EaeI YGGCCR 3 cut(s) 141, 237, 366
EagI CGGCCG 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 427
EarI CTCTTC 1 cut(s) 427
EciI GGCGGA 1 cut(s) 170
EclXI CGGCCG 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 540
Eco31I GGTCTC 1 cut(s) 570
Eco47I GGWCC 2 cut(s) 404, 924
Eco52I CGGCCG 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 838
EcoT14I CCWWGG 1 cut(s) 540
ErhI CCWWGG 1 cut(s) 540
FaeI CATG 3 cut(s) 102, 166, 197
FaiI YATR 8 cut(s) 23, 100, 164, 195, 362, 570, 629, 828
FaqI GGGAC 1 cut(s) 87
FatI CATG 3 cut(s) 98, 162, 193
FauI CCCGC 1 cut(s) 705
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 3 cut(s) 375, 462, 796
FokI GGATG 2 cut(s) 219, 242
Fsp4HI GCNGC 3 cut(s) 375, 462, 796
FspBI CTAG 5 cut(s) 50, 323, 378, 408, 548
GluI GCNGC 3 cut(s) 375, 462, 796
HaeIII GGCC 4 cut(s) 143, 239, 267, 368
HapII CCGG 2 cut(s) 264, 339
Hin1II CATG 3 cut(s) 102, 166, 197
HincII GTYRAC 2 cut(s) 304, 943
HindII GTYRAC 2 cut(s) 304, 943
HinfI GANTC 6 cut(s) 137, 291, 328, 383, 437, 493
HpaII CCGG 2 cut(s) 264, 339
HphI GGTGA 4 cut(s) 692, 763, 829, 886
Hpy166II GTNNAC 4 cut(s) 136, 304, 591, 943
Hpy188I TCNGA 4 cut(s) 56, 669, 778, 918
Hpy188III TCNNGA 2 cut(s) 194, 742
Hpy8I GTNNAC 4 cut(s) 136, 304, 591, 943
Hpy99I CGWCG 2 cut(s) 299, 374
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 5 cut(s) 8, 225, 418, 588, 914
HpyCH4IV ACGT 2 cut(s) 297, 722
HpyCH4V TGCA 3 cut(s) 421, 591, 772
HpyF10VI GCNNNNNNNGC 3 cut(s) 159, 207, 374
HpyF3I CTNAG 5 cut(s) 69, 497, 559, 813, 890
HpySE526I ACGT 2 cut(s) 297, 722
Hsp92II CATG 3 cut(s) 102, 166, 197
KroI GCCGGC 1 cut(s) 263
KroNI GCCGGC 1 cut(s) 265
Kzo9I GATC 1 cut(s) 778
LmnI GCTCC 3 cut(s) 167, 183, 487
LpnPI CCDG 9 cut(s) 234, 277, 352, 397, 492, 546, 800, 825, 852
Lsp1109I GCAGC 2 cut(s) 361, 448
LweI GCATC 2 cut(s) 197, 202
MaeI CTAG 5 cut(s) 50, 323, 378, 408, 548
MaeII ACGT 2 cut(s) 297, 722
MaeIII GTNAC 1 cut(s) 706
MalI GATC 1 cut(s) 780
MboI GATC 1 cut(s) 778
MboII GAAGA 4 cut(s) 268, 337, 444, 889
MfeI CAATTG 2 cut(s) 422, 573
MhlI GDGCHC 3 cut(s) 505, 593, 908
MluCI AATT 7 cut(s) 16, 241, 277, 422, 507, 573, 661
MlyI GAGTC 4 cut(s) 131, 337, 377, 431
MmeI TCCRAC 2 cut(s) 34, 207
MnlI CCTC 8 cut(s) 88, 122, 148, 181, 194, 279, 646, 906
MroNI GCCGGC 1 cut(s) 263
MroXI GAANNNNTTC 1 cut(s) 61
MseI TTAA 3 cut(s) 312, 455, 534
MslI CAYNNNNRTG 1 cut(s) 192
MspI CCGG 2 cut(s) 264, 339
MspR9I CCNGG 2 cut(s) 339, 840
MunI CAATTG 2 cut(s) 422, 573
Mva1269I GAATGC 1 cut(s) 826
MvaI CCWGG 1 cut(s) 840
MvnI CGCG 1 cut(s) 449
MwoI GCNNNNNNNGC 3 cut(s) 159, 207, 374
NaeI GCCGGC 1 cut(s) 265
NciI CCSGG 1 cut(s) 339
NdeII GATC 1 cut(s) 778
NgoMIV GCCGGC 1 cut(s) 263
NlaIII CATG 3 cut(s) 102, 166, 197
NlaIV GGNNCC 3 cut(s) 169, 802, 907
NmeAIII GCCGAG 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 706
PagI TCATGA 1 cut(s) 193
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PctI GAATGC 1 cut(s) 826
PdiI GCCGGC 1 cut(s) 265
PdmI GAANNNNTTC 1 cut(s) 61
PfeI GAWTC 2 cut(s) 291, 493
PflFI GACNNNGTC 1 cut(s) 299
PkrI GCNGC 3 cut(s) 376, 463, 797
PleI GAGTC 4 cut(s) 131, 336, 377, 431
PpsI GAGTC 4 cut(s) 131, 336, 377, 431
Psp6I CCWGG 1 cut(s) 838
PspGI CCWGG 1 cut(s) 838
PspN4I GGNNCC 3 cut(s) 169, 802, 907
PspPI GGNCC 3 cut(s) 266, 404, 924
PsyI GACNNNGTC 1 cut(s) 299
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
RseI CAYNNNNRTG 1 cut(s) 192
SalI GTCGAC 1 cut(s) 302
SaqAI TTAA 3 cut(s) 312, 455, 534
SatI GCNGC 3 cut(s) 375, 462, 796
Sau3AI GATC 1 cut(s) 778
Sau96I GGNCC 3 cut(s) 266, 404, 924
SchI GAGTC 4 cut(s) 131, 337, 377, 431
ScrFI CCNGG 2 cut(s) 339, 840
SduI GDGCHC 3 cut(s) 505, 593, 908
SfaNI GCATC 2 cut(s) 197, 202
SinI GGWCC 2 cut(s) 404, 924
SmiMI CAYNNNNRTG 1 cut(s) 192
SpeI ACTAGT 1 cut(s) 547
Sse9I AATT 7 cut(s) 16, 241, 277, 422, 507, 573, 661
SsiI CCGC 5 cut(s) 181, 447, 698, 795, 798
SspMI CTAG 5 cut(s) 50, 323, 378, 408, 548
StyD4I CCNGG 2 cut(s) 337, 838
StyI CCWWGG 1 cut(s) 540
TaaI ACNGT 5 cut(s) 8, 225, 418, 588, 914
TaiI ACGT 2 cut(s) 300, 725
TaqI TCGA 2 cut(s) 294, 303
TaqII GACCGA 1 cut(s) 941
TasI AATT 7 cut(s) 16, 241, 277, 422, 507, 573, 661
TauI GCSGC 1 cut(s) 798
TfiI GAWTC 2 cut(s) 291, 493
Tru1I TTAA 3 cut(s) 312, 455, 534
Tru9I TTAA 3 cut(s) 312, 455, 534
TscAI CASTG 3 cut(s) 253, 423, 679
TseFI GTSAC 1 cut(s) 706
TseI GCWGC 2 cut(s) 374, 461
Tsp45I GTSAC 1 cut(s) 706
TspDTI ATGAA 2 cut(s) 182, 633
TspGWI ACGGA 2 cut(s) 376, 869
TspRI CASTG 3 cut(s) 253, 423, 679
Tth111I GACNNNGTC 1 cut(s) 299
VneI GTGCAC 1 cut(s) 589
VpaK11BI GGWCC 2 cut(s) 404, 924
XapI RAATTY 1 cut(s) 16
XcmI CCANNNNNNNNNTGG 1 cut(s) 547
XmiI GTMKAC 1 cut(s) 303
XmnI GAANNNNTTC 1 cut(s) 61
XspI CTAG 5 cut(s) 50, 323, 378, 408, 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.