RchiOBHm_Chr3g0462341

Nudix hydrolase 15, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0008221
Physical Location & Seq
Forward (+)
10045402 .. 10047075
1674 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 855 bp
ATGGCAGGCATGGATTCTCCTCTCATTATTCCTCTTCTCTATATATTACTCATGCAGAACATGAACATTGCAATTGGCCTAAATAATAACATGGCTTATATAGTTCCTCCCTCTCTGTGCCAAACAGAGGATTTGGGAAGCGAAAATCTCCGAAGGCTTGCCAAACAGCTTCAGTTTTACAAACCACCCAAACCAATTGACGAAGTGGAGGAAAATATTGAGCATGGCATAAATGACGTGCCTTCTTCTGTAAAAATGAGGGAGAGAAGAGCAGCTGTTCTGATATGCCTCTTTGAAGATCCTGAGGATGAGCTAAGAGTTATTCTTACTAGAAGATCAATGAACTTGGCTTCACATCCAGGTGATGTAGCATTGCCAGGTGGGAAAATGGAGGAGGGAGATGAAGATGAATCTGCAACTGCACTGAGGGAAGCCATGGAAGAGATTGGCCTAGATTCTAGTCTAGTTCAAGTTGTTGCTCAACTAGAGTTCTTTTTATCTCAGCACTTGCTCACAGTTGTCCCTGTAATTGGACTCGTATCCCGGATAGAAGATTTCAAGCCTCTACTCAACGCTGACGAAGTTGATGCAATATTTGATGTCCCATTGGAGATGTTTCTCAAGAAAGAAAATCACAGATTTGAGGACAGAGAATGGAGGGGATGGAAGTATGTTGTCCATCATTTTGATTTCGAATCCGAGCAAGGGGAGTTTTTAATATGGGGACTAACTGCAAGCATTCTGATTAGAGCTGCCTCTGTTATCTACCAACAATCTCCATTCTTCCAAGCACATCTCCCTGACTTCCAAACTTTGCAAAGAGCCTTGCATAGTGTTGACTCTAATGTAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
NUDIX

Protein Analysis

284

Amino Acids

32.24

Weight (kDa)

4.68

Isoelectric Point (pI)

59.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 89 - 218 4.9e-14 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 155
AfiI CCNNNNNNNGG 3 cut(s) 127, 530, 705
AgsI TTSAA 3 cut(s) 296, 470, 559
AjiI CACGTC 1 cut(s) 238
AjnI CCWGG 2 cut(s) 358, 376
AluBI AGCT 4 cut(s) 169, 275, 313, 752
AluI AGCT 4 cut(s) 169, 275, 313, 752
AlwI GGATC 1 cut(s) 293
AoxI GGCC 2 cut(s) 76, 448
ApeKI GCWGC 2 cut(s) 272, 752
AsuC2I CCSGG 1 cut(s) 544
AsuHPI GGTGA 1 cut(s) 374
AsuII TTCGAA 1 cut(s) 693
AxyI CCTNAGG 1 cut(s) 303
BbvI GCAGC 2 cut(s) 284, 739
BccI CCATC 2 cut(s) 657, 687
BcgI CGANNNNNNTGC 2 cut(s) 569, 603
BciT130I CCWGG 2 cut(s) 360, 378
BciVI GTATCC 1 cut(s) 550
BcnI CCSGG 1 cut(s) 544
BfaI CTAG 5 cut(s) 330, 452, 459, 464, 485
BfuI GTATCC 1 cut(s) 550
BisI GCNGC 2 cut(s) 273, 753
BlsI GCNGC 2 cut(s) 274, 754
Bme1390I CCNGG 3 cut(s) 360, 378, 544
BmgBI CACGTC 1 cut(s) 238
BmrFI CCNGG 3 cut(s) 360, 378, 544
BmsI GCATC 1 cut(s) 577
Bpu14I TTCGAA 1 cut(s) 693
BpuEI CTTGAG 1 cut(s) 605
BpuMI CCSGG 1 cut(s) 544
BsaJI CCNNGG 1 cut(s) 435
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 530, 705
Bse21I CCTNAGG 1 cut(s) 303
Bse3DI GCAATG 2 cut(s) 66, 371
BseBI CCWGG 2 cut(s) 360, 378
BseDI CCNNGG 1 cut(s) 435
BseGI GGATG 3 cut(s) 313, 355, 668
BseLI CCNNNNNNNGG 3 cut(s) 127, 530, 705
BseMI GCAATG 2 cut(s) 66, 371
BseMII CTCAG 3 cut(s) 294, 416, 515
BseRI GAGGAG 2 cut(s) 9, 407
BseXI GCAGC 2 cut(s) 284, 739
BsgI GTGCAG 1 cut(s) 405
BshFI GGCC 2 cut(s) 78, 450
BsiSI CCGG 1 cut(s) 544
BslFI GGGAC 3 cut(s) 506, 587, 738
BslI CCNNNNNNNGG 3 cut(s) 127, 530, 705
BsmFI GGGAC 3 cut(s) 506, 587, 738
BsmI GAATGC 1 cut(s) 738
BsnI GGCC 2 cut(s) 78, 450
Bsp119I TTCGAA 1 cut(s) 693
Bsp143I GATC 2 cut(s) 298, 335
Bsp19I CCATGG 1 cut(s) 435
BspANI GGCC 2 cut(s) 78, 450
BspCNI CTCAG 3 cut(s) 295, 417, 514
BspPI GGATC 1 cut(s) 293
BspQI GCTCTTC 1 cut(s) 262
BspT104I TTCGAA 1 cut(s) 693
BsrDI GCAATG 2 cut(s) 66, 371
BssECI CCNNGG 1 cut(s) 435
BssMI GATC 2 cut(s) 298, 335
BssT1I CCWWGG 1 cut(s) 435
Bst2UI CCWGG 2 cut(s) 360, 378
Bst4CI ACNGT 1 cut(s) 517
Bst6I CTCTTC 3 cut(s) 39, 262, 435
BstBI TTCGAA 1 cut(s) 693
BstC8I GCNNGC 3 cut(s) 7, 159, 736
BstDEI CTNAG 4 cut(s) 303, 314, 425, 501
BstDSI CCRYGG 1 cut(s) 435
BstF5I GGATG 3 cut(s) 313, 355, 668
BstKTI GATC 2 cut(s) 301, 338
BstMBI GATC 2 cut(s) 298, 335
BstNI CCWGG 2 cut(s) 360, 378
BstSCI CCNGG 3 cut(s) 358, 376, 542
BstV1I GCAGC 2 cut(s) 284, 739
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
Bsu36I CCTNAGG 1 cut(s) 303
BsuI GTATCC 1 cut(s) 550
BsuRI GGCC 2 cut(s) 78, 450
BtgI CCRYGG 1 cut(s) 435
BtrI CACGTC 1 cut(s) 238
BtsCI GGATG 3 cut(s) 313, 355, 668
BtsIMutI CAGTG 1 cut(s) 422
Cac8I GCNNGC 3 cut(s) 7, 159, 736
CviAII CATG 7 cut(s) 10, 52, 61, 91, 224, 436, 852
DdeI CTNAG 4 cut(s) 303, 314, 425, 501
DpnI GATC 2 cut(s) 300, 337
DpnII GATC 2 cut(s) 298, 335
Eam1104I CTCTTC 3 cut(s) 39, 262, 435
EarI CTCTTC 3 cut(s) 39, 262, 435
Eco130I CCWWGG 1 cut(s) 435
Eco57I CTGAAG 1 cut(s) 155
Eco81I CCTNAGG 1 cut(s) 303
EcoRII CCWGG 2 cut(s) 358, 376
EcoT14I CCWWGG 1 cut(s) 435
ErhI CCWWGG 1 cut(s) 435
FaeI CATG 7 cut(s) 13, 55, 64, 94, 227, 439, 855
FaqI GGGAC 3 cut(s) 506, 587, 738
FatI CATG 7 cut(s) 9, 51, 60, 90, 223, 435, 851
Fnu4HI GCNGC 2 cut(s) 273, 753
FokI GGATG 3 cut(s) 320, 342, 675
Fsp4HI GCNGC 2 cut(s) 273, 753
FspBI CTAG 5 cut(s) 330, 452, 459, 464, 485
GluI GCNGC 2 cut(s) 273, 753
HaeIII GGCC 2 cut(s) 78, 450
HapII CCGG 1 cut(s) 544
Hin1II CATG 7 cut(s) 13, 55, 64, 94, 227, 439, 855
HincII GTYRAC 1 cut(s) 838
HindII GTYRAC 1 cut(s) 838
HinfI GANTC 6 cut(s) 14, 410, 455, 534, 695, 839
HpaII CCGG 1 cut(s) 544
HphI GGTGA 1 cut(s) 374
Hpy166II GTNNAC 1 cut(s) 838
Hpy188I TCNGA 4 cut(s) 152, 282, 700, 744
Hpy188III TCNNGA 2 cut(s) 302, 622
Hpy8I GTNNAC 1 cut(s) 838
HpyAV CCTTC 2 cut(s) 147, 252
HpyCH4III ACNGT 1 cut(s) 517
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 8 cut(s) 55, 71, 416, 422, 590, 734, 817, 829
HpyF3I CTNAG 4 cut(s) 303, 314, 425, 501
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 7 cut(s) 13, 55, 64, 94, 227, 439, 855
Kzo9I GATC 2 cut(s) 298, 335
LguI GCTCTTC 1 cut(s) 262
LpnPI CCDG 8 cut(s) 315, 345, 363, 372, 390, 537, 557, 813
Lsp1109I GCAGC 2 cut(s) 284, 739
LweI GCATC 1 cut(s) 577
MaeI CTAG 5 cut(s) 330, 452, 459, 464, 485
MaeII ACGT 1 cut(s) 237
MalI GATC 2 cut(s) 300, 337
MboI GATC 2 cut(s) 298, 335
MboII GAAGA 9 cut(s) 26, 237, 279, 308, 345, 416, 452, 563, 775
MfeI CAATTG 2 cut(s) 72, 195
MflI RGATCY 1 cut(s) 298
MluCI AATT 3 cut(s) 72, 195, 528
MlyI GAGTC 2 cut(s) 528, 833
MseI TTAA 1 cut(s) 716
MslI CAYNNNNRTG 1 cut(s) 360
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 1 cut(s) 544
MspR9I CCNGG 3 cut(s) 360, 378, 544
MunI CAATTG 2 cut(s) 72, 195
Mva1269I GAATGC 1 cut(s) 738
MvaI CCWGG 2 cut(s) 360, 378
NciI CCSGG 1 cut(s) 544
NcoI CCATGG 1 cut(s) 435
NdeII GATC 2 cut(s) 298, 335
NlaIII CATG 7 cut(s) 13, 55, 64, 94, 227, 439, 855
NspV TTCGAA 1 cut(s) 693
PciSI GCTCTTC 1 cut(s) 262
PctI GAATGC 1 cut(s) 738
PfeI GAWTC 4 cut(s) 14, 410, 455, 695
PfoI TCCNGGA 1 cut(s) 542
PkrI GCNGC 2 cut(s) 274, 754
PleI GAGTC 2 cut(s) 528, 833
PpsI GAGTC 2 cut(s) 528, 833
Psp6I CCWGG 2 cut(s) 358, 376
PspGI CCWGG 2 cut(s) 358, 376
PsuI RGATCY 1 cut(s) 298
PvuII CAGCTG 1 cut(s) 275
RseI CAYNNNNRTG 1 cut(s) 360
SapI GCTCTTC 1 cut(s) 262
SaqAI TTAA 1 cut(s) 716
SatI GCNGC 2 cut(s) 273, 753
Sau3AI GATC 2 cut(s) 298, 335
SchI GAGTC 2 cut(s) 528, 833
ScrFI CCNGG 3 cut(s) 360, 378, 544
SetI ASST 7 cut(s) 171, 240, 277, 315, 364, 382, 754
SfaNI GCATC 1 cut(s) 577
SfuI TTCGAA 1 cut(s) 693
SmiMI CAYNNNNRTG 1 cut(s) 360
SmlI CTYRAG 1 cut(s) 620
SmoI CTYRAG 1 cut(s) 620
Sse9I AATT 3 cut(s) 72, 195, 528
SspI AATATT 2 cut(s) 217, 594
SspMI CTAG 5 cut(s) 330, 452, 459, 464, 485
StyD4I CCNGG 3 cut(s) 358, 376, 542
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 1 cut(s) 517
TaiI ACGT 1 cut(s) 240
TaqI TCGA 1 cut(s) 693
TasI AATT 3 cut(s) 72, 195, 528
TfiI GAWTC 4 cut(s) 14, 410, 455, 695
Tru1I TTAA 1 cut(s) 716
Tru9I TTAA 1 cut(s) 716
TscAI CASTG 1 cut(s) 429
TseI GCWGC 2 cut(s) 272, 752
TspDTI ATGAA 4 cut(s) 77, 356, 417, 423
TspRI CASTG 1 cut(s) 429
XspI CTAG 5 cut(s) 330, 452, 459, 464, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.