RchiOBHm_Chr3g0467391

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0008470
Physical Location & Seq
Reverse (-)
13535459 .. 13538180
2722 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 645 bp
ATGAGCTCCTTCAGCAGCACCACCAACTTCGACAACCTGATGCTCCAAACCCTCATGGGTCGCCTCCAAATCCGACCCCCAACCACCACCGCCAACAACAACTCCTTCCTCTCCCAAACCCTCGAAGACCTCCTCTTCGATGCCGCCAACCTCTCCGCCGCCGACGACGACGACGACGAGAACAAGACCCAGCTCGCCAAGGAGGAATCCAAGCTCGAGAGGGAGATCATCCGGGTCATCCTCACCGGCAACACCGATTCGCTCAAGCCCAATTCGGGTCAGGCCGTCACGATTGGGGAGCACCACATTTGCGTCGGGTTTCACGAGGAAACGGGTTCGGATTATCGGGTTTGGGAGTGGCACGGCCATATTATGCTGTTTGATGAAGAAAACGGGTACACGCCGGAGTATATTTACGGGAATTACTTTGAGAGATTGATTGGGAAGGCGCGTGGTGGAAGTAGTGGCGGCGGTGGTCGTGGTGAAGAGGTGAAAGAGGAGGAGGAGGAGGAGGAGGAGAAAGAGAAGGTGGGGAATTTGGGGCTCAGGGAATTGATCGATGGTGTGGAGGATTCTGGTCTGGCTCGGATTGTTCATCGGAATATCAATGCCAATGCCGGTTCTACAACTACCGCAAGGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

23.74

Weight (kDa)

4.59

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 451
AciI CCGC 7 cut(s) 90, 144, 156, 159, 468, 471, 633
AcoI YGGCCR 1 cut(s) 364
AcsI RAATTY 1 cut(s) 535
AfaI GTAC 1 cut(s) 398
AfiI CCNNNNNNNGG 1 cut(s) 275
AluBI AGCT 3 cut(s) 6, 193, 214
AluI AGCT 3 cut(s) 6, 193, 214
Alw21I GWGCWC 2 cut(s) 8, 303
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 2 cut(s) 282, 364
ApeKI GCWGC 1 cut(s) 15
ApoI RAATTY 1 cut(s) 535
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
AspLEI GCGC 1 cut(s) 451
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 3 cut(s) 235, 494, 502
AvaI CYCGRG 1 cut(s) 215
BanII GRGCYC 2 cut(s) 8, 546
BauI CACGAG 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 132
Bbv12I GWGCWC 2 cut(s) 8, 303
BbvI GCAGC 1 cut(s) 27
BccI CCATC 1 cut(s) 554
BceAI ACGGC 2 cut(s) 269, 379
BcnI CCSGG 1 cut(s) 233
BisI GCNGC 4 cut(s) 16, 144, 159, 469
BlsI GCNGC 4 cut(s) 17, 145, 160, 470
Bme1390I CCNGG 1 cut(s) 233
BmeT110I CYCGRG 1 cut(s) 215
BmrFI CCNGG 1 cut(s) 233
BmsI GCATC 2 cut(s) 30, 130
BpiI GAAGAC 1 cut(s) 132
Bpu10I CCTNAGC 1 cut(s) 545
BpuEI CTTGAG 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 233
Bsa29I ATCGAT 1 cut(s) 558
BsaJI CCNNGG 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse118I RCCGGY 2 cut(s) 245, 617
BseCI ATCGAT 1 cut(s) 558
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 2 cut(s) 228, 237
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMII CTCAG 1 cut(s) 559
BseRI GAGGAG 8 cut(s) 122, 512, 515, 518, 521, 524, 527, 530
BseXI GCAGC 1 cut(s) 27
BseYI CCCAGC 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 451
BshFI GGCC 2 cut(s) 284, 366
BshVI ATCGAT 1 cut(s) 558
BsiHKAI GWGCWC 2 cut(s) 8, 303
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 4 cut(s) 232, 246, 404, 618
BslI CCNNNNNNNGG 1 cut(s) 275
BsnI GGCC 2 cut(s) 284, 366
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 3 cut(s) 8, 303, 546
Bsp143I GATC 2 cut(s) 225, 555
BspACI CCGC 7 cut(s) 90, 144, 156, 159, 468, 471, 633
BspANI GGCC 2 cut(s) 284, 366
BspCNI CTCAG 1 cut(s) 558
BspDI ATCGAT 1 cut(s) 558
BspFNI CGCG 1 cut(s) 451
BsrFI RCCGGY 2 cut(s) 245, 617
BssAI RCCGGY 2 cut(s) 245, 617
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 2 cut(s) 225, 555
BssSI CACGAG 1 cut(s) 323
BssT1I CCWWGG 1 cut(s) 198
Bst2BI CACGAG 1 cut(s) 323
Bst6I CTCTTC 2 cut(s) 140, 480
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 545, 642
BstF5I GGATG 2 cut(s) 228, 237
BstFNI CGCG 1 cut(s) 451
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 2 cut(s) 228, 558
BstMBI GATC 2 cut(s) 225, 555
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 231
BstUI CGCG 1 cut(s) 451
BstV1I GCAGC 1 cut(s) 27
BstV2I GAAGAC 1 cut(s) 132
Bsu15I ATCGAT 1 cut(s) 558
BsuRI GGCC 2 cut(s) 284, 366
BsuTUI ATCGAT 1 cut(s) 558
BtsCI GGATG 2 cut(s) 228, 237
Cac8I GCNNGC 1 cut(s) 195
CfoI GCGC 1 cut(s) 451
Cfr10I RCCGGY 2 cut(s) 245, 617
ClaI ATCGAT 1 cut(s) 558
CseI GACGC 1 cut(s) 301
Csp6I GTAC 1 cut(s) 397
CviAII CATG 1 cut(s) 55
CviJI RGCY 8 cut(s) 6, 193, 214, 268, 284, 366, 544, 584
CviKI_1 RGCY 8 cut(s) 6, 193, 214, 268, 284, 366, 544, 584
CviQI GTAC 1 cut(s) 397
DdeI CTNAG 2 cut(s) 545, 642
DpnI GATC 2 cut(s) 227, 557
DpnII GATC 2 cut(s) 225, 555
EaeI YGGCCR 1 cut(s) 364
Eam1104I CTCTTC 2 cut(s) 140, 480
EarI CTCTTC 2 cut(s) 140, 480
EciI GGCGGA 1 cut(s) 145
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 198
Eco24I GRGCYC 2 cut(s) 8, 546
Eco53kI GAGCTC 1 cut(s) 6
Eco88I CYCGRG 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 198
EcoT38I GRGCYC 2 cut(s) 8, 546
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 1 cut(s) 58
FaiI YATR 4 cut(s) 56, 369, 374, 411
FatI CATG 1 cut(s) 54
Fnu4HI GCNGC 4 cut(s) 16, 144, 159, 469
FokI GGATG 2 cut(s) 215, 224
FriOI GRGCYC 2 cut(s) 8, 546
Fsp4HI GCNGC 4 cut(s) 16, 144, 159, 469
GlaI GCGC 1 cut(s) 450
GluI GCNGC 4 cut(s) 16, 144, 159, 469
GsaI CCCAGC 1 cut(s) 193
HaeIII GGCC 2 cut(s) 284, 366
HapII CCGG 4 cut(s) 232, 246, 404, 618
HgaI GACGC 1 cut(s) 301
HhaI GCGC 1 cut(s) 451
Hin1II CATG 1 cut(s) 58
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HinfI GANTC 3 cut(s) 206, 257, 572
HpaII CCGG 4 cut(s) 232, 246, 404, 618
HphI GGTGA 3 cut(s) 235, 494, 502
Hpy166II GTNNAC 1 cut(s) 399
Hpy188I TCNGA 4 cut(s) 74, 340, 588, 600
Hpy188III TCNNGA 3 cut(s) 217, 289, 323
Hpy8I GTNNAC 1 cut(s) 399
Hpy99I CGWCG 6 cut(s) 167, 170, 173, 176, 179, 317
HpyAV CCTTC 4 cut(s) 19, 115, 439, 520
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpyF3I CTNAG 2 cut(s) 545, 642
Hsp92II CATG 1 cut(s) 58
HspAI GCGC 1 cut(s) 449
Kzo9I GATC 2 cut(s) 225, 555
LmnI GCTCC 3 cut(s) 11, 48, 298
Lsp1109I GCAGC 1 cut(s) 27
LweI GCATC 2 cut(s) 30, 130
MaeIII GTNAC 1 cut(s) 286
MalI GATC 2 cut(s) 227, 557
MboI GATC 2 cut(s) 225, 555
MboII GAAGA 4 cut(s) 127, 137, 398, 497
MhlI GDGCHC 3 cut(s) 8, 303, 546
MluCI AATT 4 cut(s) 271, 421, 535, 551
MmeI TCCRAC 1 cut(s) 97
MspI CCGG 4 cut(s) 232, 246, 404, 618
MspR9I CCNGG 1 cut(s) 233
MvnI CGCG 1 cut(s) 451
MwoI GCNNNNNNNGC 1 cut(s) 12
NciI CCSGG 1 cut(s) 233
NdeII GATC 2 cut(s) 225, 555
NlaIII CATG 1 cut(s) 58
NmuCI GTSAC 1 cut(s) 286
PaeR7I CTCGAG 1 cut(s) 215
PcsI WCGNNNNNNNCGW 3 cut(s) 171, 174, 321
PfeI GAWTC 3 cut(s) 206, 257, 572
PkrI GCNGC 4 cut(s) 17, 145, 160, 470
Psp124BI GAGCTC 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 189
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
SacI GAGCTC 1 cut(s) 8
SatI GCNGC 4 cut(s) 16, 144, 159, 469
Sau3AI GATC 2 cut(s) 225, 555
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 3 cut(s) 8, 303, 546
SetI ASST 8 cut(s) 8, 39, 132, 153, 195, 216, 492, 531
SfaNI GCATC 2 cut(s) 30, 130
Sfr274I CTCGAG 1 cut(s) 215
SlaI CTCGAG 1 cut(s) 215
SmlI CTYRAG 2 cut(s) 215, 263
SmoI CTYRAG 2 cut(s) 215, 263
Sse9I AATT 4 cut(s) 271, 421, 535, 551
SsiI CCGC 7 cut(s) 90, 144, 156, 159, 468, 471, 633
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 231
StyI CCWWGG 1 cut(s) 198
TaqI TCGA 5 cut(s) 30, 123, 138, 216, 558
TasI AATT 4 cut(s) 271, 421, 535, 551
TauI GCSGC 3 cut(s) 146, 161, 471
TfiI GAWTC 3 cut(s) 206, 257, 572
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 15
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 2 cut(s) 399, 584
XapI RAATTY 1 cut(s) 535
XhoI CTCGAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.